Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 9.3e-63 243.8 168 100.0
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 9.3e-63 243.8 168 100.0
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 9.3e-63 243.8 168 100.0
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 1.8e-45 186.4 145 95.9
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 4.5e-33 145.2 143 72.7
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 5.9e-33 144.8 143 72.0
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.5e-31 140.2 143 70.6
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 2.1e-30 136.3 142 65.5
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 8.0e-30 134.4 145 73.8
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 1.4e-29 133.7 141 50.4
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.4e-29 133.7 141 69.5
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 1.8e-29 133.3 143 75.5
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 2.3e-29 132.9 145 49.0
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 5.2e-29 131.7 143 74.1
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 8.8e-29 131.0 145 69.0
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 9.8e-28 127.5 143 66.4
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 2.2e-27 126.3 166 42.8
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.7e-27 125.6 145 66.2
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.7e-27 125.6 145 67.6
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 3.7e-27 125.6 145 66.2
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 6.3e-27 124.8 143 65.0
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 6.3e-27 124.8 143 65.0
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 6.3e-27 124.8 143 62.9
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 6.3e-27 124.8 160 46.2
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 1.4e-26 123.6 145 72.4
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 5.4e-26 121.7 145 69.7
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 7.0e-26 121.3 145 69.0
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 1.2e-25 120.6 140 49.3
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 1.6e-25 120.2 143 62.2
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 2.7e-25 119.4 141 64.5
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 7.7e-25 117.9 141 64.5
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 1.7e-24 116.7 141 70.9
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 2.2e-24 116.3 120 74.2
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 3.8e-24 115.5 141 67.4
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 5.0e-24 115.2 142 65.5
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 6.5e-24 114.8 124 79.0
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 8.5e-24 114.4 143 67.1
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 8.5e-24 114.4 141 61.7
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 3.2e-23 112.5 144 70.8
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 3.2e-23 112.5 144 61.1
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 4.2e-23 112.1 144 62.5
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 5.5e-23 111.7 120 70.0
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 7.2e-23 111.3 120 70.0
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 9.4e-23 110.9 143 65.7
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.2e-22 110.5 122 79.5
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.2e-22 110.5 145 65.5
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.6e-22 110.2 147 63.9
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 2.1e-22 109.8 147 63.9
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 2.7e-22 109.4 120 76.7
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 2.7e-22 109.4 133 67.7
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 3.6e-22 109.0 143 65.7
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.4e-21 107.1 144 61.1
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.8e-21 106.7 144 61.8
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 6.8e-21 104.8 120 70.8
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 8.8e-21 104.4 140 67.9
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 1.2e-20 104.0 126 78.6
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 2.0e-20 103.2 140 52.1
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 3.4e-20 102.4 120 69.2
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 4.4e-20 102.1 126 64.3
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 9.2e-18 94.4 116 75.0
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 1.2e-17 94.0 139 59.0
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 4.5e-17 92.0 120 63.3
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 5.9e-17 91.7 109 79.8
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 5.9e-17 91.7 120 79.2
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 1.7e-16 90.1 120 60.8
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 3.8e-16 89.0 105 58.1
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 3.8e-16 89.0 144 54.2
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 5.0e-16 88.6 105 82.9
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 6.6e-16 88.2 119 72.3
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 1.5e-15 87.0 105 66.7
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 2.5e-15 86.3 126 50.0
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 4.3e-15 85.5 106 68.9
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.6e-14 83.6 104 81.7
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.6e-14 83.6 104 81.7
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 2.8e-14 82.8 106 67.0
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 3.6e-14 82.4 104 73.1
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 3.6e-14 82.4 104 64.4
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 3.6e-14 82.4 106 77.4
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 8.0e-14 81.3 104 78.8
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 8.0e-14 81.3 104 81.7
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 8.0e-14 81.3 56 64.3
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 1.4e-13 80.5 104 72.1
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.4e-13 80.5 47 78.7
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 1.8e-13 80.1 123 65.0
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.8e-13 80.1 121 59.5
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 2.3e-13 79.7 121 67.8
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 3.0e-13 79.3 122 64.8
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 5.2e-13 78.6 121 64.5
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 5.2e-13 78.6 106 67.9
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 8.9e-13 77.8 113 65.5
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 2.0e-12 76.6 56 60.7
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 2.0e-12 76.6 106 69.8
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 4.4e-12 75.5 47 74.5
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 2.9e-11 72.8 102 78.4
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 3.7e-11 72.4 41 80.5
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 1.4e-10 70.5 44 75.0
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 4.1e-10 68.9 104 75.0
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 4.1e-10 68.9 104 74.0
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 5.4e-10 68.6 40 77.5
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 7.0e-10 68.2 56 57.1
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 4.6e-09 65.5 54 59.3
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 1.7e-08 63.5 45 64.4
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 5.0e-08 62.0 54 57.4
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 5.6e-07 58.5 55 52.7
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 9.5e-07 57.8 41 65.9
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 9.5e-07 57.8 56 48.2
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 1.6e-06 57.0 71 46.5


User provided reference genes

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