Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.3e-41 172.6 80 100.0
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 8.5e-30 133.3 81 75.3
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 1.4e-29 132.5 82 79.3
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 6.1e-28 127.1 81 75.3
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 7.9e-28 126.7 81 74.1
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.4e-27 125.9 82 75.6
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 2.3e-27 125.2 82 74.4
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.9e-27 124.4 81 74.1
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 6.7e-27 123.6 80 70.0
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 6.7e-27 123.6 80 70.0
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 6.7e-27 123.6 80 70.0
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 8.8e-27 123.2 80 71.2
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 1.1e-26 122.9 80 70.0
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 2.0e-26 122.1 81 70.4
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 1.3e-25 119.4 83 69.9
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.7e-25 119.0 80 66.2
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.7e-25 119.0 80 66.2
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.7e-25 119.0 81 71.6
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 2.2e-25 118.6 81 69.1
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 2.2e-25 118.6 81 69.1
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 2.2e-25 118.6 80 65.0
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 3.7e-25 117.9 82 69.5
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 6.3e-25 117.1 80 66.2
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 8.2e-25 116.7 81 65.4
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 8.2e-25 116.7 79 64.6
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.1e-24 116.3 80 68.8
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 1.1e-24 116.3 82 69.5
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.4e-24 115.9 81 67.9
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.8e-24 115.5 80 68.8
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.8e-24 115.5 80 65.0
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 1.8e-24 115.5 79 69.6
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.1e-24 114.8 80 65.0
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 3.1e-24 114.8 81 69.1
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 3.1e-24 114.8 81 65.4
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 3.1e-24 114.8 81 63.0
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 4.1e-24 114.4 74 70.3
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 5.3e-24 114.0 82 67.1
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 6.9e-24 113.6 81 65.4
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 6.9e-24 113.6 80 63.8
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 9.1e-24 113.2 80 63.8
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 9.1e-24 113.2 81 64.2
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 9.1e-24 113.2 73 69.9
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.2e-23 112.8 81 64.2
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 1.5e-23 112.5 79 65.8
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 2.0e-23 112.1 80 66.2
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 2.6e-23 111.7 79 62.0
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 2.6e-23 111.7 81 64.2
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 3.4e-23 111.3 80 66.2
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 3.4e-23 111.3 79 65.8
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 4.5e-23 110.9 80 62.5
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 4.5e-23 110.9 81 61.7
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 4.5e-23 110.9 80 66.2
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 4.5e-23 110.9 79 65.8
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 5.9e-23 110.5 78 69.2
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 5.9e-23 110.5 81 60.5
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 5.9e-23 110.5 81 60.5
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 5.9e-23 110.5 78 64.1
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 5.9e-23 110.5 82 67.1
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 7.7e-23 110.2 81 63.0
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 7.7e-23 110.2 81 60.5
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 7.7e-23 110.2 80 66.2
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 7.7e-23 110.2 82 59.8
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 1.0e-22 109.8 80 65.0
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 1.0e-22 109.8 85 63.5
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 1.3e-22 109.4 80 66.2
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 1.3e-22 109.4 80 65.0
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 1.7e-22 109.0 81 59.3
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 2.2e-22 108.6 80 61.2
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 2.9e-22 108.2 82 64.6
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 3.8e-22 107.8 81 60.5
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 5.0e-22 107.5 81 65.4
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 6.5e-22 107.1 79 60.8
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 6.5e-22 107.1 85 60.0
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 6.5e-22 107.1 62 77.4
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 8.5e-22 106.7 79 63.3
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 8.5e-22 106.7 79 63.3
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.1e-21 106.3 59 78.0
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 1.4e-21 105.9 82 61.0
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.9e-21 105.5 81 60.5
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.9e-21 105.5 62 74.2
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 1.9e-21 105.5 66 68.2
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 1.9e-21 105.5 80 65.0
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 2.5e-21 105.1 53 83.0
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 3.2e-21 104.8 50 88.0
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 3.2e-21 104.8 62 74.2
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 3.2e-21 104.8 81 59.3
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 4.2e-21 104.4 80 58.8
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 4.2e-21 104.4 73 65.8
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 4.2e-21 104.4 73 65.8
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 4.2e-21 104.4 81 63.0
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 5.5e-21 104.0 81 59.3
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 7.2e-21 103.6 81 60.5
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 7.2e-21 103.6 81 59.3
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 9.4e-21 103.2 50 88.0
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.2e-20 102.8 62 72.6
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.6e-20 102.4 80 58.8
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.1e-20 102.1 50 86.0
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 3.6e-20 101.3 82 58.5
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 6.1e-20 100.5 50 82.0
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 6.1e-20 100.5 80 57.5
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 7.9e-20 100.1 58 70.7
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 7.9e-20 100.1 47 87.2
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.0e-19 99.8 76 60.5
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 1.0e-19 99.8 50 82.0
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 1.0e-19 99.8 64 65.6
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.8e-19 99.0 69 63.8
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 1.8e-19 99.0 80 57.5
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 2.3e-19 98.6 80 57.5
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.3e-19 98.6 50 80.0
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 3.0e-19 98.2 78 59.0
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 3.0e-19 98.2 50 80.0
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 3.0e-19 98.2 50 80.0
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 3.9e-19 97.8 49 85.7
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 3.9e-19 97.8 58 72.4
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 3.9e-19 97.8 47 85.1
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 5.1e-19 97.4 55 72.7
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 6.7e-19 97.1 62 71.0
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 6.7e-19 97.1 50 78.0
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 6.7e-19 97.1 80 62.5
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 6.7e-19 97.1 80 58.8
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 8.8e-19 96.7 73 63.0
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 2.0e-18 95.5 80 56.2
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 2.0e-18 95.5 80 56.2
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 2.0e-18 95.5 80 56.2
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 2.0e-18 95.5 80 56.2
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 2.6e-18 95.1 50 80.0
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.6e-18 95.1 80 57.5
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 2.6e-18 95.1 80 56.2
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.6e-18 95.1 81 60.5
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 3.3e-18 94.7 80 60.0
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 3.3e-18 94.7 80 56.2
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 3.3e-18 94.7 80 56.2
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 4.4e-18 94.4 47 80.9
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 4.4e-18 94.4 47 80.9
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 7.4e-18 93.6 51 80.4
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 9.7e-18 93.2 80 56.2
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 9.7e-18 93.2 46 84.8
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 9.7e-18 93.2 46 84.8
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 9.7e-18 93.2 46 84.8
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 9.7e-18 93.2 50 78.0
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 1.7e-17 92.4 43 90.7
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.7e-17 92.4 75 58.7
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 2.2e-17 92.0 76 55.3
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 6.3e-17 90.5 62 64.5
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 1.1e-16 89.7 46 80.4
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 1.1e-16 89.7 46 80.4
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 5.3e-16 87.4 60 61.7
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 2.0e-15 85.5 82 52.4
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 2.6e-15 85.1 42 78.6
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 7.2e-13 77.0 59 57.6
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.2e-12 76.3 60 63.3
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 2.0e-10 68.9 50 64.0
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 8.2e-09 63.5 61 52.5
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 4.1e-08 61.2 53 60.4


User provided reference genes

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