Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 1.0e-91 340.1 180 100.0
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 1.6e-65 253.1 185 75.7
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.8e-65 252.3 169 78.7
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 3.8e-62 241.9 182 72.5
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 5.5e-61 238.0 180 71.1
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.4e-59 233.4 180 70.6
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 3.9e-59 231.9 168 75.0
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 5.1e-59 231.5 179 70.4
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 7.4e-58 227.6 167 73.1
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 7.4e-58 227.6 167 73.1
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.4e-56 223.4 180 70.0
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 1.4e-56 223.4 188 67.6
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 1.8e-56 223.0 180 70.0
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.8e-56 223.0 180 70.0
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 3.1e-56 222.2 179 68.7
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 1.2e-55 220.3 182 67.6
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.2e-55 220.3 180 68.3
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 1.2e-55 220.3 183 66.1
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 2.0e-55 219.5 174 72.4
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 5.9e-55 218.0 178 68.0
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 7.7e-55 217.6 176 70.5
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 1.0e-54 217.2 184 69.0
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 1.7e-54 216.5 175 71.4
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 1.7e-54 216.5 165 71.5
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 2.9e-54 215.7 176 67.0
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 3.8e-54 215.3 178 65.7
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 5.0e-54 214.9 171 70.2
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 1.1e-53 213.8 178 68.0
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 1.1e-53 213.8 174 69.5
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 3.2e-53 212.2 180 67.8
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 5.5e-53 211.5 161 72.7
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 7.2e-53 211.1 146 76.0
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 7.2e-53 211.1 181 66.9
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 9.4e-53 210.7 172 66.3
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 9.4e-53 210.7 187 63.6
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 9.4e-53 210.7 187 63.6
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 9.4e-53 210.7 180 67.2
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 1.2e-52 210.3 192 64.1
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.6e-52 209.9 192 63.5
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 1.6e-52 209.9 175 66.3
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 1.6e-52 209.9 175 65.7
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 2.7e-52 209.1 187 63.6
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 4.7e-52 208.4 194 62.9
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 7.9e-52 207.6 181 64.6
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 1.0e-51 207.2 181 64.6
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 1.4e-51 206.8 177 68.4
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 2.3e-51 206.1 176 66.5
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 3.0e-51 205.7 177 68.4
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 5.2e-51 204.9 148 74.3
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 5.2e-51 204.9 177 67.2
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 2.6e-50 202.6 170 66.5
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 5.7e-50 201.4 175 66.3
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 1.8e-48 196.4 181 61.3
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 4.1e-48 195.3 144 72.2
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 5.3e-48 194.9 194 59.8
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 5.3e-48 194.9 171 66.1
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 5.3e-48 194.9 171 66.1
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 1.6e-47 193.4 194 59.3
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 4.5e-47 191.8 181 61.3
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 4.5e-47 191.8 195 59.5
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 4.5e-47 191.8 180 64.4
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 5.9e-47 191.4 175 64.0
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 7.7e-47 191.0 181 60.2
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 7.7e-47 191.0 170 62.9
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 2.2e-46 189.5 196 58.7
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 2.2e-46 189.5 191 59.7
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 2.2e-46 189.5 180 62.2
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 3.8e-46 188.7 194 58.2
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 3.8e-46 188.7 194 58.2
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 6.5e-46 188.0 194 58.8
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 8.5e-46 187.6 183 60.1
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 8.5e-46 187.6 181 62.4
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 1.1e-45 187.2 179 60.9
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 1.1e-45 187.2 179 61.5
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 1.9e-45 186.4 200 56.5
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 1.9e-45 186.4 187 57.2
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 2.5e-45 186.0 194 57.7
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 3.2e-45 185.7 178 64.0
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 4.2e-45 185.3 181 59.1
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 4.2e-45 185.3 188 59.0
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 4.2e-45 185.3 188 59.0
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 4.2e-45 185.3 123 80.5
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 7.2e-45 184.5 191 59.2
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 9.4e-45 184.1 193 55.4
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 9.4e-45 184.1 187 56.7
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 1.2e-44 183.7 172 61.0
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 4.7e-44 181.8 141 70.2
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 6.1e-44 181.4 201 59.2
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 1.4e-43 180.3 180 59.4
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 1.4e-43 180.3 177 60.5
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 1.8e-43 179.9 187 59.4
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 1.8e-43 179.9 197 56.3
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 1.8e-43 179.9 181 60.2
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 5.2e-43 178.3 171 60.2
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 1.5e-42 176.8 181 61.9
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 3.3e-42 175.6 175 60.0
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 3.3e-42 175.6 167 62.3
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 5.7e-42 174.9 139 67.6
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 7.5e-42 174.5 170 60.0
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 3.7e-41 172.2 127 71.7
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 3.7e-41 172.2 127 71.7
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 3.7e-41 172.2 127 71.7
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.4e-40 170.2 206 52.4
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 1.8e-40 169.9 118 78.8
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 9.1e-40 167.5 165 60.0
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 1.2e-39 167.2 128 71.1
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 3.5e-39 165.6 118 74.6
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.3e-33 147.1 256 42.6
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 2.4e-32 142.9 173 52.6
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 1.0e-30 137.5 176 51.1
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 1.3e-30 137.1 131 60.3
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 2.5e-29 132.9 186 46.8
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 7.2e-29 131.3 124 59.7
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 1.0e-27 127.5 342 34.8
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 2.0e-26 123.2 194 43.8
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 2.8e-25 119.4 148 54.1
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 1.1e-24 117.5 110 65.5
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 2.7e-23 112.8 166 45.2
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 3.5e-23 112.5 150 48.7
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 1.7e-22 110.2 178 43.3
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 8.6e-22 107.8 124 49.2
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 8.6e-22 107.8 78 66.7
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 4.7e-20 102.1 107 59.8
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 2.4e-16 89.7 77 61.0
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.2e-15 87.4 84 60.7
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 2.7e-15 86.3 144 43.1
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 2.0e-10 70.1 91 44.0
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 2.0e-10 70.1 75 58.7
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 2.6e-10 69.7 53 73.6
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 8.3e-09 64.7 97 45.4


User provided reference genes

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