Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 1.4e-160 569.7 306 100.0
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 2.4e-80 303.1 275 65.5
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.3e-78 297.4 287 60.3
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 2.9e-78 296.2 264 65.2
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 7.9e-76 288.1 234 67.9
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 1.3e-75 287.3 277 62.8
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 8.7e-75 284.6 294 58.5
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 8.7e-75 284.6 276 61.6
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.6e-73 280.4 297 59.3
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 1.7e-70 270.4 266 61.7
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 1.1e-69 267.7 293 58.0
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 2.5e-69 266.5 237 64.6
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 5.5e-69 265.4 284 58.8
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 7.1e-69 265.0 291 59.1
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 2.1e-68 263.5 282 60.3
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 3.5e-68 262.7 244 60.7
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 7.9e-68 261.5 285 56.8
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 3.9e-67 259.2 241 61.0
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 3.9e-67 259.2 297 56.2
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 5.1e-67 258.8 267 61.4
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 6.7e-67 258.5 241 62.2
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 1.1e-66 257.7 239 61.1
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 1.5e-66 257.3 274 57.7
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 3.3e-66 256.1 291 58.1
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 4.3e-66 255.8 244 60.7
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 5.7e-66 255.4 194 71.6
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.3e-65 254.2 279 55.2
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 4.8e-65 252.3 298 56.4
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 4.8e-65 252.3 306 55.6
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 6.2e-65 251.9 292 56.8
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 1.1e-64 251.1 226 65.5
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 1.8e-64 250.4 238 62.2
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 3.1e-64 249.6 295 56.3
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 9.0e-64 248.1 237 63.3
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 1.2e-63 247.7 231 61.0
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 2.0e-63 246.9 293 56.3
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.0e-63 246.9 293 55.6
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.0e-63 246.9 289 57.1
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.4e-63 246.1 293 56.0
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 4.5e-63 245.7 342 50.6
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 1.1e-61 241.1 275 55.3
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 1.9e-61 240.4 225 61.3
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.5e-61 240.0 283 57.6
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 4.2e-61 239.2 265 57.7
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.5e-61 238.8 283 57.2
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 5.5e-61 238.8 283 57.2
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 7.1e-61 238.4 216 62.0
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 1.2e-60 237.7 253 56.9
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 2.7e-60 236.5 269 57.2
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 2.7e-60 236.5 277 54.5
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 7.9e-60 235.0 291 55.0
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.0e-59 234.6 296 55.1
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 3.0e-59 233.0 217 61.3
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 3.9e-59 232.6 238 55.5
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 5.1e-59 232.3 195 65.6
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 6.7e-59 231.9 215 61.4
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 8.7e-59 231.5 216 61.6
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 8.7e-59 231.5 212 61.8
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 1.5e-58 230.7 214 60.3
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 3.3e-58 229.6 227 59.5
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 5.7e-58 228.8 229 60.3
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 7.4e-58 228.4 217 61.3
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 1.6e-57 227.3 204 63.7
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 2.2e-57 226.9 211 66.4
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 2.8e-57 226.5 205 61.0
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 2.8e-57 226.5 288 52.8
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 4.8e-57 225.7 290 52.4
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.8e-56 223.8 277 51.3
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.8e-56 223.8 277 51.3
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 6.9e-56 221.9 229 58.1
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 9.0e-56 221.5 204 60.8
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 7.7e-55 218.4 283 48.4
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 1.3e-54 217.6 292 48.6
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 1.7e-54 217.2 236 55.1
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 2.9e-54 216.5 250 57.2
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 2.9e-54 216.5 236 55.1
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 2.9e-54 216.5 236 55.1
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 3.8e-54 216.1 236 54.7
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 3.8e-54 216.1 236 54.7
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 3.8e-54 216.1 209 58.4
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 3.8e-54 216.1 285 50.9
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 8.5e-54 214.9 238 55.9
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 1.1e-53 214.5 204 60.8
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 7.2e-53 211.8 215 57.2
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 6.1e-52 208.8 215 57.2
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 6.1e-52 208.8 280 48.9
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 7.9e-52 208.4 278 52.5
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 7.9e-52 208.4 296 47.6
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 7.9e-52 208.4 296 47.6
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 1.0e-51 208.0 269 53.5
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 8.8e-51 204.9 274 50.7
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.5e-50 203.4 259 54.1
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 9.7e-50 201.4 239 55.2
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.3e-49 201.1 271 52.0
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 3.1e-48 196.4 257 49.8
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 1.3e-46 191.0 169 63.9
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 1.4e-43 181.0 201 59.2
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 8.8e-43 178.3 187 61.0
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 2.0e-42 177.2 199 52.3
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 6.3e-41 172.2 252 47.2
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 2.5e-37 160.2 268 45.9
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 4.2e-37 159.5 154 56.5
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 7.2e-37 158.7 204 51.0
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.2e-36 157.9 250 44.0
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 4.7e-36 156.0 166 56.0
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 9.7e-34 148.3 211 46.0
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 1.7e-33 147.5 284 43.3
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 8.2e-33 145.2 278 40.3
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 1.1e-32 144.8 132 62.9
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 4.5e-31 139.4 201 46.8
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 1.1e-29 134.8 168 46.4
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 2.5e-29 133.7 140 57.1
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 3.0e-27 126.7 245 38.0
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 1.5e-26 124.4 187 42.8
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 2.0e-26 124.0 144 56.2
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 2.0e-26 124.0 144 56.2
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 1.1e-24 118.2 160 48.1
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 4.1e-24 116.3 138 52.9
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 7.0e-24 115.5 129 51.9
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 1.6e-23 114.4 148 46.6
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 2.0e-23 114.0 232 37.5
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 3.8e-22 109.8 231 39.8
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 5.5e-21 105.9 144 48.6
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 1.8e-19 100.9 163 47.2
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 1.1e-16 91.7 205 40.5
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.4e-16 91.3 73 65.8
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 1.0e-14 85.1 112 52.7
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 1.5e-13 81.3 72 62.5
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 5.5e-13 79.3 151 31.1
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 1.8e-11 74.3 168 35.1
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 4.4e-10 69.7 60 61.7
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 9.2e-08 62.0 46 60.9
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 2.3e-06 57.4 81 49.4
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 3.9e-06 56.6 42 71.4
C01p49410 Brassica napus HOM05D005433 ORTHO05D040690 3.9e-06 56.6 135 34.8
PRCOL_00001575 Prasinoderma coloniale HOM05D005433 ORTHO05D006675 5.0e-06 56.2 191 28.3


User provided reference genes

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