Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 0.0e+00 1245.3 841 100.0
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 9.1e-167 591.7 862 45.5
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.7e-163 579.3 865 45.3
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 8.9e-162 575.1 865 46.6
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.0e-161 573.9 869 45.2
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.8e-160 570.1 871 44.5
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 2.7e-150 537.0 827 44.4
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 2.3e-149 533.9 864 45.3
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 3.2e-143 513.5 855 49.9
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 9.2e-135 485.3 881 42.6
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 2.5e-132 477.2 878 43.2
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 4.3e-132 476.5 866 40.8
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 4.7e-131 473.0 877 45.6
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 1.1e-130 471.9 833 46.1
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.2e-129 468.4 881 40.5
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.4e-129 466.8 856 45.8
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 3.8e-128 463.4 865 45.9
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 1.4e-127 461.5 872 45.5
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 9.2e-127 458.8 846 48.9
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 1.2e-126 458.4 858 48.8
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 1.3e-125 454.9 817 41.1
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 3.3e-124 450.3 839 41.0
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 5.6e-124 449.5 853 45.5
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 1.2e-123 448.4 850 43.4
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 5.3e-122 443.0 856 40.8
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 9.0e-122 442.2 872 44.2
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.0e-121 441.0 886 43.0
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 1.3e-120 438.3 846 40.5
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 2.2e-120 437.6 873 40.9
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 3.8e-120 436.8 825 46.3
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.9e-119 434.5 856 44.4
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 2.4e-119 434.1 884 41.0
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 4.2e-119 433.3 856 44.9
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 3.5e-118 430.3 863 40.6
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 6.0e-118 429.5 870 45.7
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 6.0e-118 429.5 821 47.1
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.0e-117 428.7 892 38.2
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 1.3e-117 428.3 841 42.8
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.7e-117 427.9 886 42.3
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.3e-117 427.6 886 41.1
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 3.9e-117 426.8 862 41.4
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 5.1e-117 426.4 878 41.1
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 8.7e-117 425.6 874 41.6
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 8.7e-117 425.6 862 41.6
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 1.1e-116 425.2 834 42.2
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 7.3e-116 422.5 874 41.4
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 9.6e-116 422.2 854 48.1
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 2.8e-115 420.6 861 47.6
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 6.2e-115 419.5 895 39.3
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 8.1e-115 419.1 889 40.7
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 3.4e-113 413.7 887 43.4
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.8e-113 412.9 864 42.2
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 9.9e-113 412.1 829 39.0
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 4.9e-112 409.8 895 43.1
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 1.4e-111 408.3 846 40.8
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 3.0e-109 400.6 863 45.9
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 3.9e-109 400.2 795 43.3
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.1e-109 399.8 870 39.1
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.5e-108 398.3 828 36.8
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 5.6e-108 396.4 853 41.4
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.6e-107 394.8 871 40.2
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 1.4e-106 391.7 831 42.7
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.8e-106 391.3 830 39.4
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 2.6e-105 387.5 854 44.0
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.4e-105 387.1 872 41.4
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.9e-104 384.0 781 42.6
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.2e-102 378.6 864 38.3
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 2.7e-102 377.5 796 43.1
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 6.7e-101 372.9 860 36.5
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.1e-100 372.1 862 38.5
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 2.8e-99 367.5 854 43.3
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 2.0e-97 361.3 838 38.8
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 5.8e-97 359.8 832 37.7
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.3e-96 358.6 844 41.0
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 1.7e-96 358.2 877 39.9
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 6.5e-96 356.3 833 41.8
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.4e-95 355.1 866 37.6
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 2.5e-95 354.4 727 40.3
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 3.2e-95 354.0 847 45.2
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.2e-94 352.1 841 36.5
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 2.1e-94 351.3 713 42.4
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 7.9e-94 349.4 883 39.4
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.0e-93 349.0 862 35.6
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.3e-93 348.6 787 40.0
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 2.3e-93 347.8 869 36.7
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.5e-92 345.1 825 43.2
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.9e-92 344.7 870 40.9
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 4.3e-92 343.6 890 36.3
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 9.7e-92 342.4 860 36.9
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 2.2e-91 341.3 827 34.5
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 5.3e-90 336.7 821 36.1
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 1.4e-87 328.6 883 35.6
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.2e-86 325.5 828 37.9
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 2.1e-86 324.7 815 37.3
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 2.3e-85 321.2 898 42.7
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.1e-84 318.9 814 37.2
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 1.1e-82 312.4 836 37.4
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.4e-82 312.0 791 42.2
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 1.5e-81 308.5 827 35.9
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.0e-80 305.8 831 42.5
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 3.8e-80 303.9 891 41.0
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 6.1e-78 296.6 813 41.0
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.0e-77 295.8 839 39.6
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 8.2e-75 286.2 886 36.2
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.1e-74 285.8 862 33.1
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 4.1e-74 283.9 888 36.6
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.5e-73 282.0 862 35.4
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 4.5e-73 280.4 819 36.3
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 1.5e-71 275.4 797 36.6
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 2.7e-70 271.2 870 35.9
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 5.7e-68 263.5 862 34.8
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 7.7e-65 253.1 868 32.4
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 2.9e-64 251.1 865 37.0
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 5.0e-64 250.4 876 32.6
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 1.1e-63 249.2 820 30.4
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.5e-60 238.8 867 39.3
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 4.8e-59 233.8 871 31.2
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 2.4e-58 231.5 804 30.8
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 7.2e-55 219.9 835 30.5
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.3e-53 214.9 267 52.4
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.8e-51 208.0 829 32.4
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 1.8e-50 205.3 151 70.9
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 4.1e-50 204.1 847 28.7
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 2.7e-49 201.4 862 34.2
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 2.7e-49 201.4 862 34.2
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 3.5e-49 201.1 733 33.8
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 5.9e-49 200.3 305 44.3
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 2.9e-48 198.0 868 33.1
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.5e-47 194.9 874 31.2
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 3.3e-47 194.5 878 33.8
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 4.7e-46 190.7 865 36.3
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 2.3e-45 188.3 901 32.6
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 5.2e-45 187.2 915 31.9
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.4e-44 184.1 844 26.8
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 4.9e-43 180.6 869 33.8
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 8.3e-43 179.9 235 50.6
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.1e-42 177.6 178 55.6
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 4.1e-42 177.6 634 32.6
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 2.9e-40 171.4 353 37.7
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 3.9e-40 171.0 906 32.0
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 1.5e-39 169.1 768 29.0
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.5e-39 169.1 853 26.0
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 2.5e-39 168.3 768 29.2
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 4.3e-39 167.5 768 29.0
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 7.3e-39 166.8 859 27.1
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 2.8e-38 164.9 288 46.9
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.0e-37 162.9 853 26.0
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.2e-36 159.5 781 27.8
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 2.6e-36 158.3 813 29.4
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.4e-35 153.7 562 35.9
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 4.1e-34 151.0 208 56.2
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 1.6e-33 149.1 178 64.6
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 3.0e-32 144.8 172 54.1
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.9e-32 144.4 374 34.0
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 8.6e-32 143.3 819 28.3
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 7.3e-31 140.2 174 50.0
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.2e-30 139.4 836 25.6
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 4.7e-30 137.5 211 42.7
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.8e-29 135.6 209 41.1
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 5.2e-29 134.0 593 32.0
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.7e-27 129.0 106 71.7
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.1e-21 109.8 115 63.5
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.4e-21 109.4 103 56.3
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 8.6e-16 90.1 209 34.4
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.3e-15 88.2 393 26.7
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 4.0e-13 81.3 108 51.9
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 1.7e-11 75.9 74 62.2
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.9e-10 72.4 51 76.5
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 3.2e-10 71.6 288 26.0
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 2.7e-09 68.6 342 26.3
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 2.3e-08 65.5 355 26.2
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 3.0e-08 65.1 349 29.8
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 3.0e-08 65.1 325 31.7
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.5e-07 62.0 341 25.5
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 5.6e-07 60.8 74 48.6
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 7.3e-07 60.5 367 26.7
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.3e-06 59.7 644 31.7
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.6e-06 59.3 367 24.8
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 2.1e-06 58.9 375 25.6
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 2.1e-06 58.9 60 53.3
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 6.2e-06 57.4 336 25.6
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 8.1e-06 57.0 343 28.0


User provided reference genes

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