Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 5.2e-289 996.9 466 100.0
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 3.5e-253 877.9 449 88.2
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 2.5e-251 871.7 448 87.9
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 3.7e-250 867.8 464 86.0
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.1e-249 866.3 448 87.5
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 5.3e-249 864.0 443 89.2
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 4.5e-248 860.9 446 86.5
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 4.9e-247 857.4 463 84.7
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 1.1e-246 856.3 449 86.9
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 1.9e-246 855.5 446 87.0
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 5.5e-246 854.0 459 84.3
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 5.5e-246 854.0 463 84.2
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 6.0e-245 850.5 464 84.1
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 7.9e-245 850.1 469 82.3
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.9e-243 845.5 465 81.5
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 5.7e-243 844.0 450 85.1
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 1.3e-242 842.8 497 79.3
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 6.3e-242 840.5 499 78.0
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 6.3e-242 840.5 499 78.0
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 3.1e-241 838.2 434 86.9
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 6.9e-241 837.0 466 81.8
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 1.2e-240 836.3 447 84.1
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 1.5e-240 835.9 449 84.9
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 3.4e-240 834.7 486 79.4
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 7.7e-240 833.6 449 84.9
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 5.0e-239 830.9 462 81.2
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 3.2e-238 828.2 448 82.8
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 3.2e-238 828.2 451 83.1
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 7.2e-238 827.0 451 83.1
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 9.4e-238 826.6 457 80.1
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 1.2e-237 826.2 452 81.0
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.6e-237 825.9 448 82.8
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 4.6e-237 824.3 460 80.2
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 4.6e-237 824.3 448 82.4
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 6.1e-237 823.9 450 82.9
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 7.9e-237 823.5 457 79.9
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 1.4e-236 822.8 462 80.3
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 3.0e-236 821.6 430 84.7
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 3.9e-236 821.2 450 82.7
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 1.1e-235 819.7 436 84.6
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 1.5e-235 819.3 432 84.3
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 1.5e-235 819.3 434 85.3
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.5e-235 819.3 463 78.6
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 1.5e-235 819.3 451 83.1
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 2.5e-235 818.5 435 85.7
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 1.7e-234 815.8 444 83.6
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 8.2e-234 813.5 446 81.8
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 8.2e-234 813.5 446 81.8
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 1.1e-233 813.1 444 83.6
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 9.1e-233 810.1 457 79.9
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 1.2e-232 809.7 452 79.9
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 1.5e-232 809.3 432 83.6
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 1.5e-232 809.3 435 83.7
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 4.5e-232 807.7 448 81.7
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 6.5e-231 803.9 443 81.7
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 6.5e-231 803.9 447 80.8
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 1.4e-230 802.7 444 80.9
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 1.4e-230 802.7 443 82.2
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.9e-230 802.4 454 81.3
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.9e-230 802.4 454 81.3
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.2e-230 801.2 492 74.0
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 4.7e-229 797.7 458 78.6
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 6.1e-229 797.3 490 77.6
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 7.9e-229 797.0 450 80.9
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 1.4e-228 796.2 441 81.9
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 1.4e-228 796.2 448 80.6
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 2.3e-228 795.4 448 79.9
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 2.3e-228 795.4 433 82.9
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 3.9e-228 794.7 444 81.1
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 2.0e-227 792.3 433 82.2
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 2.6e-227 792.0 433 82.4
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 3.3e-227 791.6 451 79.4
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 4.4e-227 791.2 445 80.2
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 4.4e-227 791.2 445 80.2
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 7.4e-227 790.4 452 79.4
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 1.3e-226 789.6 448 79.7
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 1.3e-226 789.6 441 81.0
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 2.8e-226 788.5 448 79.5
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 4.8e-226 787.7 451 79.2
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 6.3e-226 787.3 432 82.4
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 1.1e-225 786.6 464 77.8
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 4.1e-225 784.6 428 83.4
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.2e-224 783.1 441 80.5
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 6.5e-223 777.3 438 80.6
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 1.2e-221 773.1 434 80.9
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 1.8e-220 769.2 494 72.5
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.6e-216 755.4 440 76.1
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 5.9e-216 754.2 433 79.0
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 1.3e-210 736.5 432 78.0
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 1.4e-209 733.0 394 84.0
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 1.4e-209 733.0 453 74.2
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 1.8e-209 732.6 441 75.7
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 5.0e-207 724.5 382 84.6
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 2.0e-200 702.6 397 79.6
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 6.6e-199 697.6 450 70.2
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 1.8e-193 679.5 455 69.0
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 3.5e-192 675.2 427 71.0
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 6.6e-191 671.0 446 70.6
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 2.5e-190 669.1 421 75.5
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 1.2e-187 660.2 448 69.2
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 4.7e-181 638.3 439 66.3
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.8e-173 612.5 302 90.1
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 5.4e-169 598.2 334 79.0
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 6.0e-168 594.7 309 85.4
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 1.6e-160 570.1 445 61.8
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 9.6e-158 560.8 377 71.1
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 6.9e-156 554.7 464 58.2
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 2.2e-154 549.7 294 83.0
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 3.7e-133 479.2 279 77.4
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 6.6e-82 308.9 196 76.0
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 1.2e-75 288.1 164 76.8
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 7.3e-73 278.9 177 70.6
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 1.0e-71 275.0 233 57.9
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 6.4e-69 265.8 429 41.3
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 8.3e-69 265.4 132 87.1
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 6.2e-64 249.2 149 77.9
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 1.1e-63 248.4 133 82.7
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 1.8e-63 247.7 216 61.1
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 4.0e-63 246.5 120 92.5
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 2.4e-60 237.3 130 81.5
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 7.1e-52 209.1 119 77.3
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 4.0e-47 193.4 249 49.0
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 6.8e-47 192.6 119 74.8
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 3.5e-35 153.7 99 70.7
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 7.9e-27 125.9 104 56.7
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 3.0e-26 124.0 83 67.5
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 5.3e-23 113.2 181 38.7
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 1.3e-21 108.6 62 75.8
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 3.8e-21 107.1 61 77.0
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.8e-21 107.1 108 50.0
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 8.2e-16 89.4 68 61.8
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 1.5e-09 68.6 55 58.2
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 2.8e-08 64.3 43 65.1


User provided reference genes

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