Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 6.6e-148 527.3 261 100.0
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 2.7e-53 213.0 253 49.8
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 6.1e-53 211.8 250 52.0
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 3.4e-51 206.1 259 49.8
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 3.4e-51 206.1 249 50.2
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 3.7e-50 202.6 250 46.8
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.8e-49 200.3 254 47.6
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 2.4e-49 199.9 228 50.0
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 4.1e-49 199.1 277 45.8
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 5.0e-47 192.2 252 46.8
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.1e-46 191.0 252 45.6
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 2.1e-45 186.8 244 44.3
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 2.3e-44 183.3 264 46.6
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 2.3e-44 183.3 255 45.5
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 8.8e-44 181.4 249 45.4
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 3.4e-43 179.5 253 45.8
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 4.4e-43 179.1 266 45.9
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 1.7e-42 177.2 258 42.6
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 3.7e-42 176.0 260 43.8
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 8.3e-42 174.9 259 45.6
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 1.8e-41 173.7 244 45.9
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 5.4e-41 172.2 260 44.2
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 4.5e-40 169.1 190 51.6
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 5.9e-40 168.7 253 47.8
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 2.9e-39 166.4 226 48.2
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 8.6e-39 164.9 254 46.1
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 3.3e-38 162.9 242 43.4
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 3.3e-38 162.9 258 41.5
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 4.3e-38 162.5 254 44.1
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 4.3e-38 162.5 258 43.4
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 5.6e-38 162.2 226 49.1
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.6e-37 160.6 262 42.0
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 8.0e-37 158.3 249 45.0
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.0e-36 156.4 254 44.1
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 6.8e-36 155.2 256 46.1
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 1.2e-35 154.5 261 41.4
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.5e-35 154.1 257 43.6
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 2.0e-35 153.7 250 44.4
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 2.6e-35 153.3 261 41.0
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 4.4e-35 152.5 274 40.5
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 7.5e-35 151.8 216 42.6
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.7e-34 150.6 225 43.6
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 3.7e-34 149.4 257 42.8
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 3.7e-34 149.4 248 43.1
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 4.9e-34 149.1 234 46.2
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 1.8e-33 147.1 225 45.3
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 4.1e-33 146.0 249 40.2
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 5.4e-33 145.6 249 41.0
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 1.6e-32 144.1 115 63.5
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 2.7e-32 143.3 273 39.6
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 2.7e-32 143.3 250 40.8
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 3.5e-32 142.9 249 40.2
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.0e-31 141.4 263 38.8
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 1.3e-31 141.0 263 39.9
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 3.0e-31 139.8 243 42.4
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 6.6e-31 138.7 277 39.7
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 8.6e-31 138.3 253 39.5
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 1.9e-30 137.1 228 42.1
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 3.3e-30 136.3 269 40.5
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 5.6e-30 135.6 255 38.8
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 7.3e-30 135.2 199 44.7
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 1.2e-29 134.4 272 39.0
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 2.1e-29 133.7 259 41.3
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 4.7e-29 132.5 251 40.2
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 6.2e-29 132.1 114 57.9
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 5.8e-27 125.6 267 37.8
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 2.2e-26 123.6 257 36.2
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 3.7e-26 122.9 244 36.9
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 6.4e-26 122.1 236 38.6
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 1.1e-25 121.3 163 42.9
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.1e-25 121.3 262 37.8
Sopen10g003350 Solanum pennellii HOM05D016660 ORTHO05D006345 2.4e-25 120.2 207 38.6
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 3.2e-25 119.8 255 38.4
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 4.6e-24 115.9 250 37.2
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 4.6e-24 115.9 255 38.0
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 6.0e-24 115.5 247 36.0
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.3e-23 113.6 222 38.3
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 5.0e-23 112.5 259 35.9
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 3.3e-22 109.8 240 37.5
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.6e-21 107.5 243 35.8
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 2.8e-21 106.7 255 37.3
Solyc10g007156.2 Solanum lycopersicum HOM05D016660 ORTHO05D006345 2.8e-21 106.7 182 39.0
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 3.6e-21 106.3 247 36.0
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 4.7e-21 105.9 255 38.0
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 8.1e-21 105.1 249 34.9
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 1.4e-20 104.4 251 35.9
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.8e-20 104.0 247 37.2
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 2.3e-20 103.6 253 36.4
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 3.1e-20 103.2 253 34.0
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 3.1e-20 103.2 248 35.1
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 8.9e-20 101.7 247 35.2
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 1.2e-19 101.3 170 40.0
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 1.7e-18 97.4 249 34.9
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 2.2e-18 97.1 258 35.3
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 4.9e-18 95.9 258 32.2
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 6.4e-18 95.5 272 35.3
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.1e-17 94.7 249 36.1
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 3.2e-17 93.2 273 34.4
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 1.6e-16 90.9 261 31.4
Oeu051102.1 Olea europaea HOM05D006105 ORTHO05D006345 2.7e-16 90.1 108 50.0
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 3.5e-16 89.7 255 35.7
Lsat_1_v5_gn_7_103061 Lactuca sativa HOM05D006105 ORTHO05D006345 6.0e-16 89.0 239 36.0
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.0e-15 88.2 246 36.2
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 3.0e-15 86.7 270 33.0
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 3.9e-15 86.3 254 33.5
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 3.9e-15 86.3 254 31.1
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 8.6e-15 85.1 262 29.4
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 8.6e-15 85.1 248 32.3
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 2.5e-14 83.6 244 33.2
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 3.3e-14 83.2 252 31.0
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.1e-13 80.5 118 44.9
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 2.1e-13 80.5 251 32.7
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 2.1e-13 80.5 247 34.8
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 4.7e-13 79.3 248 34.3
Sopen10g003370 Solanum pennellii HOM05D016660 ORTHO05D006345 1.4e-12 77.8 120 38.3
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 1.8e-12 77.4 255 30.2
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 8.9e-12 75.1 177 38.4
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 2.6e-11 73.6 177 37.9
Sopen10g003360 Solanum pennellii HOM05D016660 ORTHO05D006345 7.6e-11 72.0 107 35.5
HanXRQChr17g0545011 Helianthus annuus HOM05D006105 ORTHO05D006345 1.7e-10 70.9 183 35.5
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 1.7e-10 70.9 278 32.7
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 1.7e-10 70.9 68 66.2
PGSC0003DMG400044091 Solanum tuberosum HOM05D016660 ORTHO05D006345 3.8e-10 69.7 107 39.3
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 6.4e-10 68.9 79 51.9
Migut.H01972 Erythranthe guttata HOM05D006105 ORTHO05D006345 8.4e-10 68.6 186 37.1
PGSC0003DMG400044967 Solanum tuberosum HOM05D016660 ORTHO05D006345 1.9e-09 67.4 156 32.7
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 4.1e-09 66.2 152 34.9
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 1.6e-08 64.3 87 50.6
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.0e-07 61.6 137 37.2
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 3.0e-07 60.1 273 27.8
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 1.9e-06 57.4 264 28.0


User provided reference genes

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