Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g11210 Coffea canephora HOM05D008293 ORTHO05D010504 5.7e-220 767.3 391 100.0
Dinv14981 Davidia involucrata HOM05D008293 ORTHO05D010504 1.6e-150 536.6 374 70.1
Nitab4.5_0000246g0170 Nicotiana tabacum HOM05D008293 ORTHO05D010504 9.2e-146 520.8 379 68.9
Hma1.2p1_2505F.1_g323420 Hydrangea macrophylla HOM05D008293 ORTHO05D010504 4.6e-145 518.5 374 69.3
PGSC0003DMG400012428 Solanum tuberosum HOM05D008293 ORTHO05D010504 1.7e-144 516.5 379 68.3
Nitab4.5_0001145g0060 Nicotiana tabacum HOM05D008293 ORTHO05D010504 2.3e-144 516.2 379 68.9
Sopen07g030780 Solanum pennellii HOM05D008293 ORTHO05D010504 3.3e-143 512.3 379 67.0
CSS0000482 Camellia sinensis var. sinensis HOM05D008293 ORTHO05D010504 4.3e-143 511.9 375 68.8
Actinidia18798 Actinidia chinensis HOM05D008293 ORTHO05D010504 5.6e-143 511.5 375 68.8
TAR627G0720 Trochodendron aralioides HOM05D008293 ORTHO05D010504 1.6e-142 510.0 374 68.7
CAN.G162.9 Capsicum annuum HOM05D008293 ORTHO05D010504 1.4e-141 506.9 377 67.4
Rhsim04G0025400 Rhododendron simsii HOM05D008293 ORTHO05D010504 3.4e-140 502.3 374 68.4
Prupe.4G167100 Prunus persica HOM05D008293 ORTHO05D010504 7.6e-140 501.1 374 67.4
GSVIVG01014211001 Vitis vinifera HOM05D008293 ORTHO05D010504 6.4e-139 498.0 374 66.6
Thecc.07G109900 Theobroma cacao HOM05D008293 ORTHO05D010504 1.2e-137 493.8 374 66.6
Peaxi162Scf00069g02232 Petunia axillaris HOM05D008293 ORTHO05D010504 1.7e-136 490.0 378 66.4
MD03G1241800 Malus domestica HOM05D008293 ORTHO05D010504 5.1e-136 488.4 371 66.0
Atru.chr2.2164 Acer truncatum HOM05D008293 ORTHO05D010504 2.5e-135 486.1 376 66.0
Migut.M00735 Erythranthe guttata HOM05D008293 ORTHO05D010504 2.5e-135 486.1 376 65.2
QL08p026533 Quercus lobata HOM05D008293 ORTHO05D010504 2.1e-134 483.0 378 65.9
Gohir.A13G148900 Gossypium hirsutum HOM05D008293 ORTHO05D010504 8.9e-133 477.6 374 64.2
Gohir.D13G153400 Gossypium hirsutum HOM05D008293 ORTHO05D010504 9.9e-132 474.2 374 64.2
COL.COLO4_24863 Corchorus olitorius HOM05D008293 ORTHO05D010504 2.9e-131 472.6 374 63.9
Gorai.013G173300 Gossypium raimondii HOM05D008293 ORTHO05D010504 1.9e-130 469.9 376 63.8
PSO782G2569 Papaver somniferum HOM05D008293 ORTHO05D010504 9.3e-130 467.6 375 63.5
Aqoxy4G00368 Aquilegia oxysepala HOM05D008293 ORTHO05D010504 1.3e-128 463.8 374 62.8
Ciclev10020583m.g Citrus clementina HOM05D008293 ORTHO05D010504 8.7e-128 461.1 377 63.1
CANSAT35G0405 Cannabis sativa HOM05D008293 ORTHO05D010504 2.6e-124 449.5 374 62.3
Haze_09337 Corylus avellana HOM05D008293 ORTHO05D010504 4.4e-124 448.7 388 60.8
PGR083G2613 Punica granatum HOM05D008293 ORTHO05D010504 4.2e-122 442.2 389 59.6
HPP92_024759 Vanilla planifolia HOM05D008293 ORTHO05D010504 7.6e-116 421.4 383 57.2
Nn1g09105 Nelumbo nucifera HOM05D008293 ORTHO05D010504 3.2e-114 416.0 378 58.5
AagrBONN_evm.TU.Sc2ySwM_344.4932 Anthoceros agrestis HOM05D008293 ORTHO05D010504 4.6e-113 412.1 373 56.8
Solyc07g062543.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 3.3e-111 406.0 290 68.3
Pp3c22_22050 Physcomitrium patens HOM05D008293 ORTHO05D010504 2.6e-108 396.4 374 55.1
RcHm_v2.0_Chr5g0030831 Rosa chinensis HOM05D008293 ORTHO05D010504 4.9e-107 392.1 339 59.6
Mapoly0032s0102 Marchantia polymorpha HOM05D008293 ORTHO05D010504 2.3e-104 383.3 377 54.6
Pp3c19_10600 Physcomitrium patens HOM05D008293 ORTHO05D010504 3.9e-104 382.5 374 52.7
SMO118G0404 Selaginella moellendorffii HOM05D008293 ORTHO05D010504 5.7e-103 378.6 385 52.5
SGA_v2.0_scaffold55G19705 Striga asiatica HOM05D008293 ORTHO05D010504 9.6e-103 377.9 379 53.3
Ciclev10023335m.g Citrus clementina HOM05D008293 ORTHO05D010504 7.2e-98 361.7 406 50.7
Lj1A831T70 Lonicera japonica HOM05D008293 ORTHO05D010504 2.6e-92 343.2 254 67.7
RcHm_v2.0_Chr5g0031211 Rosa chinensis HOM05D008293 ORTHO05D010504 2.2e-83 313.5 339 53.1
PRCOL_00003950 Prasinoderma coloniale HOM05D008293 ORTHO05D010504 6.5e-83 312.0 392 46.4
SEGI_20639 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 1.6e-81 307.4 284 56.0
CBR_g40882 Chara braunii HOM05D008293 ORTHO05D010504 1.2e-73 281.2 378 43.4
Cpa.g.sc97.100 Carica papaya HOM05D008293 ORTHO05D010504 1.5e-71 274.2 203 68.0
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 4.7e-57 226.1 185 61.6
RcHm_v2.0_Chr7g0194341 Rosa chinensis HOM05D008293 ORTHO05D010504 4.0e-56 223.0 233 53.2
RcHm_v2.0_Chr5g0031411 Rosa chinensis HOM05D008293 ORTHO05D010504 1.2e-52 211.5 221 52.5
MD10G1199100 Malus domestica HOM05D008293 ORTHO05D010504 2.4e-37 160.6 171 50.9
Ca_29004_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 1.6e-36 157.9 194 46.9
AagrBONN_evm.TU.Sc2ySwM_344.893 Anthoceros agrestis HOM05D008293 ORTHO05D010504 1.0e-35 155.2 143 53.1
Cfa019577 Carpinus fangiana HOM05D008293 ORTHO05D010504 1.9e-26 124.4 88 65.9
Solyc07g062547.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 1.6e-25 121.3 88 65.9
Lj1P831T51 Lonicera japonica HOM05D008293 ORTHO05D010504 2.0e-23 114.4 88 63.6
Actinidia35215 Actinidia chinensis HOM05D008293 ORTHO05D010504 1.3e-22 111.7 281 34.9
SEGI_30761 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 4.3e-18 96.7 88 56.8
Ca_29048_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 2.0e-15 87.8 100 48.0
Sopen06g001050 Solanum pennellii HOM05D008293 ORTHO05D023155 1.7e-11 74.7 67 56.7
RcHm_v2.0_Chr5g0030641 Rosa chinensis HOM05D008293 ORTHO05D010504 3.6e-09 67.0 67 55.2


User provided reference genes

Program Settings