Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 1.8e-262 908.7 458 100.0
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 1.1e-206 723.4 460 78.7
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 3.2e-206 721.8 460 79.1
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 2.1e-205 719.2 460 78.3
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 2.1e-205 719.2 460 78.3
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 4.6e-205 718.0 461 79.2
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 1.1e-203 713.4 460 78.5
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 1.1e-203 713.4 458 77.1
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 1.9e-203 712.6 460 77.6
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 1.3e-202 709.9 460 77.0
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 4.0e-201 704.9 456 77.6
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 1.9e-198 696.0 461 77.4
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 4.2e-198 694.9 460 75.4
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 4.2e-198 694.9 459 75.2
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 6.7e-196 687.6 459 75.2
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 1.3e-194 683.3 458 73.8
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 6.2e-194 681.0 457 73.7
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.8e-193 679.5 475 73.1
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 2.2e-191 672.5 459 72.8
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 3.8e-191 671.8 454 74.2
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 1.9e-190 669.5 469 74.0
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 1.6e-189 666.4 467 73.4
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 2.1e-189 666.0 476 71.6
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 2.7e-189 665.6 467 73.2
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 2.7e-189 665.6 460 73.9
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 3.5e-189 665.2 461 73.3
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 6.0e-189 664.5 460 73.9
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 7.9e-189 664.1 460 73.0
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 2.3e-188 662.5 457 72.2
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 3.9e-188 661.8 447 74.3
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 5.1e-188 661.4 462 71.2
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 2.5e-187 659.1 462 72.7
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 4.3e-187 658.3 460 71.5
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 4.3e-187 658.3 462 70.6
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 4.3e-187 658.3 463 71.7
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 7.4e-187 657.5 474 70.3
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 1.6e-186 656.4 460 71.7
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 1.6e-186 656.4 458 73.4
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 1.4e-185 653.3 477 70.9
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 1.8e-185 652.9 460 72.6
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 3.1e-185 652.1 462 70.1
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 6.9e-185 651.0 463 72.4
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 9.0e-185 650.6 462 69.9
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 9.0e-185 650.6 457 71.1
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 9.0e-185 650.6 463 72.1
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 2.0e-184 649.4 462 69.5
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 2.6e-184 649.0 463 71.9
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 4.5e-184 648.3 462 69.7
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 7.6e-184 647.5 462 70.1
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 1.0e-183 647.1 462 69.0
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 1.0e-183 647.1 462 69.7
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 1.3e-183 646.7 459 71.7
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.7e-183 646.4 457 70.7
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 8.5e-183 644.0 456 70.2
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 8.5e-183 644.0 456 70.2
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 1.1e-182 643.7 455 72.7
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 2.5e-182 642.5 463 68.5
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 5.5e-182 641.3 466 69.5
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 2.1e-181 639.4 462 72.1
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 2.1e-181 639.4 457 70.2
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 1.3e-180 636.7 453 70.4
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 1.3e-180 636.7 463 68.9
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 2.3e-180 636.0 458 68.8
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 5.1e-180 634.8 455 69.5
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 5.1e-180 634.8 459 69.5
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 1.5e-179 633.3 458 68.6
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 2.5e-179 632.5 454 69.4
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 2.5e-179 632.5 457 70.0
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 3.3e-179 632.1 455 71.0
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 9.1e-177 624.0 463 68.7
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 1.2e-176 623.6 460 68.9
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 2.6e-176 622.5 501 63.5
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 3.4e-176 622.1 473 69.1
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 7.7e-176 620.9 460 69.1
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 1.0e-175 620.5 467 67.0
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 1.0e-175 620.5 463 68.5
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 2.9e-175 619.0 457 68.7
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 5.5e-174 614.8 458 67.5
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 2.7e-173 612.5 513 62.4
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 1.0e-172 610.5 460 66.5
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 2.6e-171 605.9 426 71.4
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 4.4e-171 605.1 432 69.7
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 5.7e-171 604.7 463 65.7
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 3.1e-169 599.0 461 67.7
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 8.5e-167 590.9 459 66.9
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 7.4e-163 577.8 460 66.1
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 2.8e-162 575.9 451 63.9
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 4.5e-160 568.5 475 63.8
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 1.0e-159 567.4 460 63.9
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 1.3e-159 567.0 401 69.1
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 6.5e-159 564.7 413 68.8
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 5.2e-156 555.1 465 62.4
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 6.7e-156 554.7 426 66.0
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 2.4e-153 546.2 411 66.9
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 4.7e-141 505.4 464 58.6
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 2.3e-140 503.1 473 59.0
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 2.9e-135 486.1 309 79.3
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 8.9e-132 474.6 450 53.1
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 6.6e-127 458.4 418 59.6
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 1.1e-121 441.0 337 65.3
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 2.5e-118 429.9 299 74.6
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 1.3e-114 417.5 281 73.3
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 1.5e-102 377.5 303 63.4
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 7.3e-102 375.2 334 62.3
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 4.2e-97 359.4 347 58.8
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 4.6e-96 355.9 456 44.7
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 2.2e-90 337.0 455 43.7
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 4.9e-90 335.9 405 45.9
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 8.4e-90 335.1 463 45.4
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 1.9e-89 334.0 381 50.7
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 6.0e-88 328.9 474 40.5
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 2.5e-86 323.6 462 40.7
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 7.1e-81 305.4 227 62.6
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 2.7e-80 303.5 303 56.4
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 1.4e-73 281.2 233 62.2
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 2.7e-72 276.9 247 61.5
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 7.9e-64 248.8 256 49.2
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 3.6e-56 223.4 164 65.2
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 4.1e-52 209.9 167 62.9
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 1.6e-48 198.0 119 77.3
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 4.2e-41 173.3 158 63.9
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 3.0e-39 167.2 128 68.0
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 6.3e-37 159.5 129 65.1
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 8.2e-37 159.1 125 64.0
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 4.1e-36 156.8 129 60.5
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 7.7e-27 125.9 102 65.7
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 1.8e-20 104.8 86 58.1
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 3.1e-20 104.0 103 54.4
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 4.5e-19 100.1 323 27.2
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 8.9e-15 85.9 52 84.6
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 2.4e-12 77.8 176 33.5
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 7.8e-11 72.8 54 75.9


User provided reference genes

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