Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g11080 Coffea canephora HOM05D006614 ORTHO05D008217 0.0e+00 1145.6 603 100.0
Nitab4.5_0003565g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 2.5e-235 818.9 621 69.2
CSS0027020 Camellia sinensis var. sinensis HOM05D006614 ORTHO05D008217 8.1e-234 813.9 610 71.5
Nitab4.5_0006953g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 1.4e-233 813.1 609 70.3
PGSC0003DMG400046940 Solanum tuberosum HOM05D006614 ORTHO05D008217 2.1e-229 799.3 604 72.8
MSTRG.6677 Avicennia marina HOM05D006614 ORTHO05D008217 4.6e-229 798.1 611 71.4
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 7.9e-229 797.3 600 68.2
Sopen07g030680 Solanum pennellii HOM05D006614 ORTHO05D008217 6.7e-228 794.3 606 72.4
Peaxi162Scf00111g01423 Petunia axillaris HOM05D006614 ORTHO05D008217 7.4e-227 790.8 604 68.2
Solyc07g062440.1 Solanum lycopersicum HOM05D006614 ORTHO05D008217 2.8e-226 788.9 606 72.3
Oeu061358.1 Olea europaea HOM05D006614 ORTHO05D008217 1.8e-225 786.2 595 70.4
vmacro23466 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 1.3e-220 770.0 609 68.6
Hma1.2p1_0290F.1_g114830 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 1.6e-218 763.1 601 68.1
Actinidia12578 Actinidia chinensis HOM05D006614 ORTHO05D008217 3.1e-217 758.8 599 65.1
CAN.G375.15 Capsicum annuum HOM05D006614 ORTHO05D008217 6.9e-217 757.7 606 67.7
Migut.M00728 Erythranthe guttata HOM05D006614 ORTHO05D008217 1.2e-216 756.9 607 65.6
SGA_v2.0_scaffold34G13782 Striga asiatica HOM05D006614 ORTHO05D008217 6.5e-215 751.1 608 66.8
Cpa.g.sc77.8 Carica papaya HOM05D006614 ORTHO05D008217 5.1e-212 741.5 612 66.5
Rhsim06G0208100 Rhododendron simsii HOM05D006614 ORTHO05D008217 3.7e-210 735.3 609 67.0
TAR375G0652 Trochodendron aralioides HOM05D006614 ORTHO05D008217 6.3e-210 734.6 630 64.4
GSVIVG01014198001 Vitis vinifera HOM05D006614 ORTHO05D008217 3.1e-209 732.3 601 62.9
Lj1P829T27 Lonicera japonica HOM05D006614 ORTHO05D008217 1.0e-204 717.2 592 64.4
HanXRQChr15g0476201 Helianthus annuus HOM05D006614 ORTHO05D008217 1.5e-203 713.4 602 61.6
SalBow5G0223 Salvia bowleyana HOM05D006614 ORTHO05D008217 7.4e-203 711.1 602 63.8
Manes.15G094800 Manihot esculenta HOM05D006614 ORTHO05D008217 1.1e-201 707.2 582 61.5
PGR142G0467 Punica granatum HOM05D006614 ORTHO05D008217 2.4e-201 706.1 608 63.2
DCAR_021025 Daucus carota HOM05D006614 ORTHO05D008217 1.5e-200 703.4 616 58.6
Thecc.07G117000 Theobroma cacao HOM05D006614 ORTHO05D008217 1.3e-199 700.3 610 62.5
Duzib213G0629 Durio zibethinus HOM05D006614 ORTHO05D008217 5.5e-198 694.9 607 62.3
COL.COLO4_17543 Corchorus olitorius HOM05D006614 ORTHO05D008217 1.2e-197 693.7 605 60.2
TWI38G0322 Tripterygium wilfordii HOM05D006614 ORTHO05D008217 2.7e-197 692.6 607 61.6
Prupe.4G164700 Prunus persica HOM05D006614 ORTHO05D008217 3.9e-196 688.7 618 61.7
Sc16g0007600 Simmondsia chinensis HOM05D006614 ORTHO05D008217 3.9e-196 688.7 617 61.9
Glyma.14G066300 Glycine max HOM05D006614 ORTHO05D008217 6.7e-196 688.0 607 58.8
Sed0001562 Sechium edule HOM05D006614 ORTHO05D008217 1.5e-195 686.8 615 60.8
ClCG11G017450 Citrullus lanatus HOM05D006614 ORTHO05D008217 2.6e-195 686.0 603 62.5
unitig_747.g21586 Utricularia gibba HOM05D006614 ORTHO05D008217 5.7e-195 684.9 599 60.9
THA.LOC104822565 Tarenaya hassleriana HOM05D006614 ORTHO05D008217 3.7e-194 682.2 628 58.9
Gohir.D07G233600 Gossypium hirsutum HOM05D006614 ORTHO05D008217 3.1e-193 679.1 613 62.0
ECA240G1555 Erigeron canadensis HOM05D006614 ORTHO05D008217 7.0e-193 677.9 617 62.6
Gohir.A07G226400 Gossypium hirsutum HOM05D006614 ORTHO05D008217 7.0e-193 677.9 611 62.0
FAN16G2994 Fragaria x ananassa HOM05D006614 ORTHO05D008217 1.2e-192 677.2 608 58.1
MELO3C025640.2 Cucumis melo HOM05D006614 ORTHO05D008217 2.6e-192 676.0 604 61.3
FvH4_3g18290 Fragaria vesca HOM05D006614 ORTHO05D008217 3.5e-192 675.6 610 57.7
Ah.09g230960 Amaranthus hybridus HOM05D006614 ORTHO05D008217 7.7e-192 674.5 627 58.9
CsaV3_4G033120 Cucumis sativus L. HOM05D006614 ORTHO05D008217 1.0e-191 674.1 608 59.7
FAN11G1715 Fragaria x ananassa HOM05D006614 ORTHO05D008217 1.3e-191 673.7 608 57.7
Phvul.008G231100 Phaseolus vulgaris HOM05D006614 ORTHO05D008217 2.2e-191 672.9 605 58.7
Gorai.001G269000 Gossypium raimondii HOM05D006614 ORTHO05D008217 2.9e-191 672.5 605 60.8
Psat2g179000 Pisum sativum HOM05D006614 ORTHO05D008217 8.5e-191 671.0 628 59.2
TPR.G25839 Trifolium pratense HOM05D006614 ORTHO05D008217 8.5e-191 671.0 627 59.5
RcHm_v2.0_Chr5g0030921 Rosa chinensis HOM05D006614 ORTHO05D008217 1.1e-190 670.6 619 58.3
Lalb_Chr17g0346371 Lupinus albus HOM05D006614 ORTHO05D008217 2.5e-190 669.5 615 58.9
Thecc.07G116400 Theobroma cacao HOM05D006614 ORTHO05D008217 5.5e-190 668.3 495 70.1
Medtr5g080700 Medicago truncatula HOM05D006614 ORTHO05D008217 7.2e-190 667.9 626 59.1
Sp3g13110 Schrenkiella parvula HOM05D006614 ORTHO05D008217 8.0e-189 664.5 616 56.3
CARHR089840 Cardamine hirsuta HOM05D006614 ORTHO05D008217 3.0e-188 662.5 629 58.8
LjContig00141g0022614 Lotus japonicus HOM05D006614 ORTHO05D008217 5.2e-188 661.8 619 58.8
Potri.001G390600 Populus trichocarpa HOM05D006614 ORTHO05D008217 5.2e-188 661.8 601 57.7
EL10Ac8g18445 Beta vulgaris HOM05D006614 ORTHO05D008217 8.8e-188 661.0 623 58.6
MD03G1243600 Malus domestica HOM05D006614 ORTHO05D008217 1.5e-187 660.2 612 59.5
VMungo0647G0674 Vigna mungo HOM05D006614 ORTHO05D008217 9.7e-187 657.5 594 59.8
arahy.Tifrunner.gnm1.ann1.087IU6 Arachis hypogaea HOM05D006614 ORTHO05D008217 2.2e-186 656.4 623 59.1
Ca_05900_v3 Cicer arietinum L. HOM05D006614 ORTHO05D008217 3.7e-186 655.6 614 58.8
arahy.Tifrunner.gnm1.ann1.UH0U35 Arachis hypogaea HOM05D006614 ORTHO05D008217 8.2e-186 654.4 623 59.2
AT3G14900 Arabidopsis thaliana HOM05D006614 ORTHO05D008217 7.0e-185 651.4 622 55.8
Thhalv10022322m.g Eutrema salsugineum HOM05D006614 ORTHO05D008217 7.0e-185 651.4 610 55.9
AL3G27220 Arabidopsis lyrata HOM05D006614 ORTHO05D008217 1.6e-184 650.2 618 56.8
A05p34510 Brassica napus HOM05D006614 ORTHO05D008217 1.6e-184 650.2 614 55.0
BraA05t22271Z Brassica rapa HOM05D006614 ORTHO05D008217 1.6e-184 650.2 614 55.0
C05p52250 Brassica napus HOM05D006614 ORTHO05D008217 4.5e-184 648.7 614 54.9
Carub.0003s1456 Capsella rubella HOM05D006614 ORTHO05D008217 4.5e-184 648.7 622 57.9
BolC5t33914H Brassica oleracea HOM05D006614 ORTHO05D008217 1.7e-183 646.7 620 55.8
Atru.chr2.2145 Acer truncatum HOM05D006614 ORTHO05D008217 1.1e-182 644.0 593 59.0
CANSAT35G1108 Cannabis sativa HOM05D006614 ORTHO05D008217 1.1e-182 644.0 614 58.0
Aa31LG8G2110 Aethionema arabicum HOM05D006614 ORTHO05D008217 2.5e-182 642.9 634 56.3
CiPaw.11G160300 Carya illinoinensis HOM05D006614 ORTHO05D008217 3.2e-182 642.5 636 57.4
Cfa019566 Carpinus fangiana HOM05D006614 ORTHO05D008217 7.2e-182 641.3 500 67.6
QL12p002313 Quercus lobata HOM05D006614 ORTHO05D008217 2.1e-181 639.8 509 65.8
Hma1.2p1_0290F.1_g114840 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 8.0e-181 637.9 491 70.7
AUR62021467 Chenopodium quinoa HOM05D006614 ORTHO05D008217 1.0e-180 637.5 623 56.7
CDE12G0873 Ceratophyllum demersum HOM05D006614 ORTHO05D008217 8.8e-180 634.4 536 60.3
PSO063G1163 Papaver somniferum HOM05D006614 ORTHO05D008217 3.4e-179 632.5 620 52.9
BcaB06g25331 Brassica carinata HOM05D006614 ORTHO05D008217 4.4e-179 632.1 618 55.0
PSO421G0295 Papaver somniferum HOM05D006614 ORTHO05D008217 8.3e-178 627.9 616 52.6
Haze_09323 Corylus avellana HOM05D006614 ORTHO05D008217 1.4e-177 627.1 501 65.9
BcaB06g29517 Brassica carinata HOM05D006614 ORTHO05D008217 9.1e-177 624.4 592 55.1
vmacro11940 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 1.3e-175 620.5 569 61.0
Aqoxy1G00012 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 3.2e-174 615.9 554 62.1
MBI12_g10753_MAGBIO Magnolia biondii HOM05D006614 ORTHO05D008217 3.6e-173 612.5 477 65.6
AUR62010952 Chenopodium quinoa HOM05D006614 ORTHO05D008217 1.3e-167 594.0 621 53.3
ATR0810G004 Amborella trichopoda HOM05D006614 ORTHO05D008217 1.2e-163 580.9 578 58.0
FAN25G0567 Fragaria x ananassa HOM05D006614 ORTHO05D008217 1.6e-160 570.5 617 53.3
HPP92_015867 Vanilla planifolia HOM05D006614 ORTHO05D008217 7.5e-155 551.6 602 49.8
Sabra16G0256000 Salix brachista HOM05D006614 ORTHO05D008217 5.6e-142 508.8 314 72.3
Psat0s3066g0080 Pisum sativum HOM05D006614 ORTHO05D008217 1.2e-139 501.1 452 58.6
Eucgr.K01881 Eucalyptus grandis HOM05D006614 ORTHO05D008217 7.6e-139 498.4 625 47.2
Zm00001eb078480 Zea mays HOM05D006614 ORTHO05D008217 7.1e-137 491.9 507 50.5
Os04g0497900 Oryza sativa ssp. japonica HOM05D006614 ORTHO05D008217 1.0e-135 488.0 500 52.2
Aqoxy3G00116 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 3.8e-130 469.5 416 63.2
Glyma.02G250300 Glycine max HOM05D006614 ORTHO05D008217 5.8e-107 392.5 340 65.6
Ciclev10023881m.g Citrus clementina HOM05D006614 ORTHO05D008217 1.7e-106 391.0 344 60.2
SEGI_22211 Sequoiadendron giganteum HOM05D006614 ORTHO05D008217 1.9e-73 281.2 470 35.3
SMO356G0609 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 1.2e-48 198.7 275 40.0
SMO356G0760 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 2.8e-48 197.6 274 39.4
AagrBONN_evm.TU.Sc2ySwM_228.5094 Anthoceros agrestis HOM05D006614 ORTHO05D008217 6.8e-47 193.0 452 35.4
Pp3c16_3160 Physcomitrium patens HOM05D006614 ORTHO05D008217 2.0e-43 181.4 447 34.9
Mapoly0097s0086 Marchantia polymorpha HOM05D006614 ORTHO05D008217 4.0e-39 167.2 292 32.9
Dinv02793 Davidia involucrata HOM05D006614 ORTHO05D008217 1.2e-30 139.0 92 75.0
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 2.0e-30 138.3 92 68.5
MD11G1263800 Malus domestica HOM05D006614 ORTHO05D008217 9.2e-28 129.4 90 63.3
Psat0s3066g0040 Pisum sativum HOM05D006614 ORTHO05D008217 8.1e-24 116.3 75 72.0
FAN21G3229 Fragaria x ananassa HOM05D006614 ORTHO05D008217 2.9e-21 107.8 80 65.0
HPP92_015860 Vanilla planifolia HOM05D006614 ORTHO05D008217 1.6e-19 102.1 58 74.1
CBR_g47994 Chara braunii HOM05D006614 ORTHO05D008217 1.0e-18 99.4 232 30.2
Cfa001947 Carpinus fangiana HOM05D006614 ORTHO05D008217 6.6e-18 96.7 62 71.0
Aqoxy3G00115 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 1.3e-13 82.4 45 77.8


User provided reference genes

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