Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 0.0e+00 1110.9 552 100.0
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 4.8e-273 944.1 552 83.9
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 4.8e-273 944.1 549 84.7
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 5.3e-272 940.6 538 86.6
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 1.2e-271 939.5 538 86.4
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 5.8e-271 937.2 538 84.6
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 6.4e-270 933.7 534 85.2
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 1.9e-269 932.2 544 83.3
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 2.4e-269 931.8 544 82.2
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 1.9e-266 922.2 544 80.5
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 9.6e-266 919.8 543 81.0
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 3.7e-265 917.9 610 75.2
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 4.8e-265 917.5 610 75.1
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 3.4e-263 911.4 544 81.2
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 5.8e-263 910.6 538 81.6
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 5.8e-263 910.6 538 81.6
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 3.8e-262 907.9 544 81.8
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 1.9e-261 905.6 549 82.9
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 2.5e-261 905.2 543 81.8
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 7.1e-261 903.7 545 82.0
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 1.6e-260 902.5 544 81.8
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 6.0e-260 900.6 544 80.9
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 6.0e-260 900.6 568 79.2
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.1e-258 896.3 549 77.8
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 1.3e-257 892.9 549 80.3
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 6.2e-257 890.6 545 79.8
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 6.2e-257 890.6 545 79.8
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 1.1e-256 889.8 545 80.0
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 1.8e-256 889.0 552 77.9
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 5.3e-256 887.5 549 80.9
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 9.0e-256 886.7 545 79.4
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 1.2e-255 886.3 544 80.7
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 4.5e-255 884.4 549 78.5
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 4.5e-255 884.4 548 79.7
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 1.3e-254 882.9 544 78.7
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 5.0e-254 880.9 548 79.4
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 5.0e-254 880.9 544 81.2
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 2.5e-253 878.6 582 76.1
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 3.2e-253 878.2 538 81.0
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 4.2e-253 877.9 545 80.2
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 7.1e-253 877.1 539 80.7
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 1.6e-252 875.9 538 80.7
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 2.7e-252 875.2 540 79.8
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 4.6e-252 874.4 567 76.4
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 4.6e-252 874.4 544 79.2
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 4.6e-252 874.4 544 76.5
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 6.1e-252 874.0 538 80.9
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 7.9e-252 873.6 534 80.7
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 2.3e-251 872.1 538 78.4
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 2.3e-251 872.1 540 77.6
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 2.3e-251 872.1 540 77.6
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 3.9e-251 871.3 545 79.4
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 1.9e-250 869.0 540 77.4
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 2.5e-250 868.6 538 79.9
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 4.3e-250 867.8 540 78.5
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 5.7e-250 867.5 533 80.3
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 3.7e-249 864.8 540 77.2
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 1.4e-248 862.8 538 79.6
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 9.0e-248 860.1 540 78.1
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 1.2e-247 859.8 540 78.5
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 4.5e-247 857.8 537 79.1
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 1.7e-246 855.9 537 77.7
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 5.0e-246 854.4 541 78.2
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 6.5e-246 854.0 538 78.6
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 3.2e-245 851.7 538 78.4
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 1.0e-243 846.7 557 76.1
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 3.0e-243 845.1 535 77.6
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 8.8e-243 843.6 546 75.6
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.7e-241 839.3 534 76.4
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 9.1e-240 833.6 546 75.3
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 7.7e-239 830.5 546 75.1
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.0e-238 830.1 535 75.3
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 1.7e-238 829.3 540 74.6
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 3.2e-237 825.1 540 77.0
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 6.1e-236 820.8 539 76.6
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 8.8e-235 817.0 600 70.2
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 9.7e-234 813.5 534 75.3
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 1.7e-233 812.8 640 65.9
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 2.8e-233 812.0 539 77.0
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 7.7e-231 803.9 515 78.6
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 3.6e-228 795.0 549 73.4
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 9.7e-226 786.9 540 74.8
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 2.4e-224 782.3 539 72.5
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 1.7e-222 776.2 530 70.8
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 2.2e-222 775.8 549 73.4
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 1.2e-220 770.0 530 71.1
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 4.4e-218 761.5 533 71.7
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.1e-216 756.9 549 71.6
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 8.8e-211 737.3 452 80.1
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 7.0e-208 727.6 764 53.9
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 4.4e-202 708.4 579 62.9
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 4.7e-196 688.3 552 66.3
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.1e-192 677.2 400 80.8
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 1.9e-192 676.4 540 65.9
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 7.8e-191 671.0 534 65.0
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 1.3e-190 670.2 377 84.9
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 5.6e-189 664.8 376 84.8
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 1.3e-182 643.7 534 58.4
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 3.0e-182 642.5 545 56.9
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 1.5e-181 640.2 440 70.7
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 3.2e-168 595.9 370 76.8
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 2.7e-167 592.8 529 54.4
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 9.0e-155 551.2 389 71.5
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 7.6e-146 521.5 496 52.2
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 6.0e-143 511.9 367 67.0
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 7.6e-138 495.0 342 66.7
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 2.3e-134 483.4 490 52.7
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 2.6e-122 443.4 269 79.6
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 7.7e-122 441.8 276 76.8
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 4.5e-114 416.0 625 38.7
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 1.1e-112 411.4 378 60.6
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 7.7e-106 388.7 325 63.7
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 1.2e-98 364.8 220 75.9
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 4.0e-94 349.7 272 64.0
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 1.2e-79 301.6 401 41.1
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 4.7e-71 273.1 602 31.4
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 3.7e-68 263.5 154 84.4
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 3.7e-68 263.5 158 77.2
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 1.9e-67 261.2 192 68.2
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 2.4e-67 260.8 167 77.2
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.0e-65 255.4 152 79.6
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.7e-65 254.6 247 57.5
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 7.3e-64 249.2 548 29.6
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 1.3e-60 238.4 139 83.5
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 9.2e-59 232.3 170 69.4
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 4.3e-56 223.4 820 24.1
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.1e-54 218.8 152 73.0
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 7.6e-53 212.6 152 71.7
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 7.6e-53 212.6 251 51.0
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 1.2e-50 205.3 163 60.7
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 1.6e-50 204.9 143 72.0
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 2.3e-49 201.1 271 39.1
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.9e-48 198.0 109 86.2
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.7e-44 184.9 134 67.9
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 5.4e-43 179.9 189 54.5
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 1.2e-42 178.7 121 78.5
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 1.2e-34 152.1 85 89.4
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 1.2e-18 99.0 120 47.5
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 5.7e-16 90.1 63 68.3
SEGI_13361 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.1e-11 75.9 71 54.9
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.0e-09 69.3 53 64.2
CBR_g34498 Chara braunii HOM05D003088 ORTHO05D006665 3.0e-09 67.8 74 47.3
PGSC0003DMG400002563 Solanum tuberosum HOM05D003301 ORTHO05D003665 8.2e-07 59.7 280 21.4
ClCG07G010240 Citrullus lanatus HOM05D005139 ORTHO05D006125 5.3e-06 57.0 70 55.7
Carub.0002s1494 Capsella rubella HOM05D001168 ORTHO05D001044 9.1e-06 56.2 44 65.9


User provided reference genes

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