Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 2.8e-283 978.0 514 100.0
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 8.4e-155 551.2 537 59.8
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 7.8e-153 544.7 543 59.5
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 1.1e-149 534.3 534 58.8
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 9.0e-149 531.2 542 58.9
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 1.5e-148 530.4 567 56.3
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 3.8e-147 525.8 533 59.1
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 4.9e-147 525.4 538 58.7
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.9e-146 523.5 540 58.5
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.2e-146 522.7 537 55.7
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 5.1e-144 515.4 586 54.1
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 7.3e-143 511.5 524 58.8
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.5e-140 503.8 526 56.5
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 4.9e-139 498.8 533 57.2
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.1e-138 497.7 548 56.8
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 3.2e-138 496.1 526 56.5
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 1.3e-136 490.7 533 55.9
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.1e-135 487.6 531 56.3
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.1e-134 483.4 532 56.0
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 3.7e-134 482.6 529 55.0
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.8e-134 482.3 536 55.2
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.4e-133 480.7 556 54.0
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.4e-133 480.7 552 52.9
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 6.9e-133 478.4 532 55.8
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 9.0e-133 478.0 532 55.6
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.5e-132 477.2 535 54.0
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 2.6e-132 476.5 520 56.2
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 3.4e-132 476.1 536 57.1
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 5.8e-132 475.3 553 52.8
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 2.9e-131 473.0 530 54.2
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 6.5e-131 471.9 571 52.0
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 2.5e-130 469.9 533 54.0
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 7.9e-129 464.9 537 54.4
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 8.7e-128 461.5 543 53.0
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 2.5e-127 459.9 538 54.6
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.7e-126 456.1 530 54.3
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 4.8e-126 455.7 567 52.4
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 6.2e-126 455.3 544 53.7
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 2.4e-125 453.4 551 52.3
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 4.1e-125 452.6 533 54.0
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.1e-125 452.6 539 51.4
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 6.9e-125 451.8 574 50.9
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 1.3e-123 447.6 534 53.6
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.1e-122 444.5 540 53.5
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.1e-122 444.5 526 54.8
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 4.2e-122 442.6 635 45.8
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 4.6e-121 439.1 538 53.5
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 6.7e-120 435.3 540 50.2
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.1e-119 434.5 523 50.7
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.5e-119 434.1 543 51.9
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 3.3e-119 433.0 559 49.9
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 5.7e-119 432.2 528 50.6
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 2.8e-118 429.9 568 49.5
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 3.7e-118 429.5 539 51.8
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.8e-117 427.2 542 50.4
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 6.9e-117 425.2 549 47.9
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 9.0e-117 424.9 549 49.7
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 1.2e-116 424.5 547 49.9
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.6e-116 423.3 530 52.1
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 2.2e-115 420.2 546 49.6
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.1e-114 417.9 481 54.7
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 1.9e-114 417.2 590 49.0
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.6e-113 414.1 525 49.9
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 3.0e-112 409.8 451 56.3
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 3.9e-112 409.5 489 51.9
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 6.7e-112 408.7 525 51.4
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.1e-111 407.9 532 51.3
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 5.7e-111 405.6 519 50.1
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 8.2e-110 401.7 540 49.4
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 9.1e-109 398.3 543 48.8
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 5.9e-108 395.6 546 47.4
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 6.5e-107 392.1 554 48.2
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.1e-106 391.3 538 48.3
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.4e-106 391.0 538 48.9
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 1.9e-106 390.6 539 48.8
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.2e-105 387.9 567 48.1
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 2.1e-105 387.1 564 46.8
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 4.4e-103 379.4 522 47.5
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 4.8e-102 375.9 535 46.5
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 7.0e-101 372.1 535 46.2
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 9.1e-101 371.7 521 48.0
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.3e-99 367.9 338 59.2
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 9.4e-98 361.7 540 47.4
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.2e-97 361.3 438 49.3
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 3.0e-96 356.7 521 46.6
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 2.0e-95 354.0 525 46.1
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 7.5e-95 352.1 554 43.7
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 4.2e-90 336.3 518 45.8
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 4.2e-90 336.3 518 45.6
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 5.5e-90 335.9 464 49.1
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 9.4e-90 335.1 521 46.3
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 2.7e-89 333.6 521 45.7
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 6.1e-89 332.4 559 43.6
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 2.2e-86 323.9 531 44.6
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.2e-86 323.9 547 44.8
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 2.7e-84 317.0 570 41.6
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 5.9e-84 315.8 528 42.4
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 3.8e-83 313.2 463 44.7
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 4.2e-82 309.7 531 41.2
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.8e-80 304.3 489 44.8
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 2.3e-80 303.9 301 56.1
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 9.2e-77 292.0 525 40.2
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.6e-73 281.2 550 40.7
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 1.6e-73 281.2 535 41.3
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 2.8e-73 280.4 536 40.9
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.2e-71 275.0 481 43.0
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.2e-71 275.0 481 43.0
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.4e-69 267.3 296 53.4
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.0e-67 261.9 377 48.5
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 8.9e-64 248.8 446 43.9
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 1.5e-63 248.1 445 43.8
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 2.0e-63 247.7 299 49.5
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 6.0e-60 236.1 396 42.9
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 1.5e-58 231.5 482 42.1
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 1.5e-50 204.9 329 41.3
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 4.7e-41 173.3 571 31.2
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 3.4e-39 167.2 522 32.2
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 1.2e-36 158.7 565 30.4
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.2e-36 158.7 253 41.5
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 3.3e-34 150.6 410 35.4
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.6e-31 141.0 236 47.0
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 4.2e-29 133.7 183 40.4
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 4.2e-21 107.1 221 37.6
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 7.1e-21 106.3 245 38.0
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 6.0e-20 103.2 130 50.0
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 1.1e-18 99.0 183 43.7
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 1.4e-16 92.0 221 35.7
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 4.0e-16 90.5 73 60.3
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.2e-15 89.0 125 36.0
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.3e-14 85.5 100 55.0
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 1.1e-13 82.4 212 35.4
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 7.1e-13 79.7 196 35.7
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 7.9e-12 76.3 115 43.5
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 6.7e-11 73.2 99 48.5
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 6.7e-11 73.2 99 48.5
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 6.7e-11 73.2 99 48.5
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 6.7e-11 73.2 99 48.5
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 6.7e-11 73.2 99 48.5
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 6.7e-11 73.2 99 48.5
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 5.7e-10 70.1 95 46.3
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 1.6e-09 68.6 253 26.1
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 2.9e-06 57.8 37 70.3


User provided reference genes

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