Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 8.5e-279 963.0 471 100.0
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.2e-227 793.1 472 80.3
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 3.2e-225 785.0 473 79.5
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 5.2e-220 767.7 474 77.6
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 8.9e-220 766.9 475 79.2
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 7.0e-217 757.3 498 74.5
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 3.5e-216 755.0 472 76.3
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.3e-215 753.1 472 76.3
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 3.6e-213 745.0 515 70.9
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 4.0e-212 741.5 515 70.5
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 5.2e-212 741.1 515 70.5
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 6.8e-212 740.7 483 75.4
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 2.0e-211 739.2 515 70.9
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 3.4e-211 738.4 478 73.2
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 5.8e-211 737.6 474 73.8
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.7e-210 736.1 517 69.8
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 4.9e-210 734.6 476 74.4
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.4e-209 733.0 516 70.5
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.9e-209 732.6 473 73.4
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.2e-208 729.9 472 73.7
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 3.5e-208 728.4 479 73.9
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 6.0e-208 727.6 473 73.4
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 3.9e-207 724.9 476 73.3
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 3.9e-207 724.9 476 73.7
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 5.1e-207 724.5 472 72.5
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.5e-206 722.2 477 72.5
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 1.6e-205 719.5 498 71.1
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.4e-204 715.7 473 72.3
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.1e-204 715.3 474 72.2
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.9e-204 713.8 473 72.3
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 8.9e-204 713.8 475 73.3
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.2e-203 713.4 476 72.1
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 2.6e-203 712.2 476 71.8
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.4e-203 711.8 474 71.9
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 1.3e-202 709.9 478 72.2
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.7e-202 709.5 474 71.7
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.9e-202 708.8 478 71.3
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 8.4e-202 707.2 477 72.3
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.1e-201 706.8 474 72.8
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 1.1e-201 706.8 480 71.0
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 2.4e-201 705.7 479 70.8
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 4.1e-201 704.9 476 70.4
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 7.1e-201 704.1 476 72.1
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 7.1e-201 704.1 478 71.8
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.2e-200 703.4 476 71.2
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 2.7e-200 702.2 477 72.7
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 4.6e-200 701.4 477 72.7
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 2.3e-199 699.1 475 70.9
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.1e-199 698.0 476 72.5
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 6.6e-199 697.6 480 70.8
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.5e-198 696.4 477 73.0
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 5.6e-198 694.5 472 70.3
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 5.6e-198 694.5 480 71.0
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 7.3e-198 694.1 473 72.9
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 8.1e-197 690.6 480 70.4
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.1e-196 690.3 481 70.9
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 4.0e-196 688.3 479 71.0
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 5.2e-196 688.0 472 69.7
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 4.4e-195 684.9 478 70.7
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 7.6e-195 684.1 479 70.6
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.1e-193 680.2 476 69.1
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.9e-193 679.5 474 68.8
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 1.9e-193 679.5 476 69.1
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 9.3e-193 677.2 484 67.4
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.2e-192 676.8 539 64.0
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 6.0e-192 674.5 476 67.9
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 7.8e-192 674.1 515 66.8
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.0e-191 673.7 541 61.6
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 1.3e-191 673.3 480 69.6
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.7e-191 672.9 432 74.3
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 2.3e-191 672.5 525 64.8
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.1e-190 670.2 483 70.4
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.5e-190 669.8 496 69.4
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 4.3e-190 668.3 474 69.0
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 4.3e-190 668.3 476 69.1
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.3e-189 666.8 513 66.5
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 2.1e-189 666.0 435 74.0
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.1e-188 662.1 432 72.9
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 4.0e-188 661.8 478 68.2
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.4e-185 653.3 474 65.4
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.3e-183 646.0 479 66.6
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 5.6e-182 641.3 386 79.3
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 7.4e-182 641.0 480 65.6
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.1e-181 639.4 481 66.5
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 2.1e-181 639.4 480 67.5
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.8e-181 638.3 479 65.3
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 4.8e-181 638.3 434 70.0
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 8.1e-181 637.5 477 65.8
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.4e-180 636.0 484 65.1
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 3.4e-179 632.1 476 65.3
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 3.4e-179 632.1 473 64.1
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 4.5e-179 631.7 472 64.8
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 9.9e-179 630.6 478 66.3
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.7e-178 629.8 478 66.3
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.6e-176 621.7 474 64.1
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.3e-174 615.5 473 63.0
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 3.3e-174 615.5 483 63.8
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 1.3e-173 613.6 386 77.7
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.2e-171 607.1 475 62.9
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 1.2e-171 607.1 475 63.4
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 2.6e-171 605.9 476 63.2
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 4.5e-171 605.1 473 61.9
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.7e-170 603.2 476 63.2
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.7e-170 603.2 404 73.3
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 2.9e-170 602.4 476 62.4
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 2.9e-170 602.4 476 62.4
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.9e-170 602.4 386 75.4
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 3.8e-170 602.1 476 63.0
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 8.4e-170 600.9 474 61.4
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 4.2e-169 598.6 475 62.1
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 9.3e-169 597.4 476 61.6
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 9.3e-169 597.4 476 61.6
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 2.7e-168 595.9 478 62.6
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 6.7e-167 591.3 476 61.3
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.0e-163 579.7 390 72.8
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 1.9e-161 573.2 434 66.4
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.4e-156 557.0 396 68.4
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 6.9e-156 554.7 456 60.5
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 2.9e-154 549.3 436 63.8
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 8.5e-154 547.7 491 56.4
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 7.2e-153 544.7 474 58.9
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 5.1e-151 538.5 394 67.8
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 3.3e-150 535.8 497 55.9
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 2.2e-149 533.1 435 63.0
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.7e-146 523.5 508 53.5
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 2.2e-146 523.1 346 73.4
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 3.0e-143 512.7 289 83.4
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.8e-140 503.4 287 83.3
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 4.2e-137 492.3 460 56.1
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 5.5e-137 491.9 394 61.2
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 8.8e-135 484.6 283 79.5
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.0e-127 461.1 307 67.8
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 4.7e-120 435.6 290 70.7
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 2.8e-112 409.8 287 67.2
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 6.1e-112 408.7 297 62.3
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.3e-109 401.0 294 65.0
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 9.2e-108 394.8 527 44.6
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 6.0e-107 392.1 571 41.7
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.1e-103 379.8 295 66.8
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.7e-101 374.0 304 57.6
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 6.6e-98 362.1 388 47.7
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.3e-93 347.8 537 39.1
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.1e-84 318.2 365 50.4
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.6e-64 251.1 439 38.0
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-63 247.3 214 58.9
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 4.0e-63 246.5 205 60.0
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.9e-50 203.4 179 58.7
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 5.0e-45 186.4 192 54.7
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.5e-45 186.0 145 63.4
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.4e-42 178.3 127 70.9
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.5e-41 174.9 187 51.9
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.1e-39 168.7 95 80.0
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.1e-39 166.8 93 80.6
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.5e-38 164.9 174 50.6
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.6e-38 164.1 93 79.6
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 5.0e-37 159.8 144 56.2
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 5.0e-37 159.8 144 56.2
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 9.4e-36 155.6 108 68.5
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.2e-35 155.2 127 54.3
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 7.4e-33 146.0 136 56.6
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 5.3e-31 139.8 86 73.3
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 5.3e-31 139.8 86 73.3
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 9.1e-31 139.0 152 50.0
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 3.6e-27 127.1 164 40.2
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 4.4e-17 93.6 72 62.5
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.3e-13 82.0 45 77.8


User provided reference genes

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