Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 3.6e-177 624.8 314 100.0
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 2.7e-132 475.7 315 74.3
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 2.3e-131 472.6 316 75.3
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 2.2e-129 466.1 315 73.7
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 3.5e-127 458.8 315 72.1
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 1.3e-126 456.8 315 72.4
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 3.2e-125 452.2 316 72.2
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 3.2e-125 452.2 315 71.7
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 7.2e-125 451.1 316 72.2
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 2.3e-123 446.0 319 70.8
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 4.0e-123 445.3 316 70.6
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 8.8e-123 444.1 304 73.0
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 4.4e-122 441.8 316 69.9
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 1.7e-121 439.9 335 66.9
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 8.2e-121 437.6 310 69.4
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 2.6e-119 432.6 286 75.2
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 4.5e-119 431.8 316 67.4
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 3.8e-118 428.7 311 66.6
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 8.5e-118 427.6 311 67.8
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 1.5e-117 426.8 319 67.7
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 2.5e-117 426.0 310 68.7
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 1.2e-116 423.7 314 66.6
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 3.6e-116 422.2 310 66.5
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 6.1e-116 421.4 315 66.3
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 1.0e-115 420.6 319 64.3
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.8e-115 419.9 310 66.1
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 1.8e-115 419.9 310 67.1
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 3.0e-115 419.1 311 65.9
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 4.0e-115 418.7 314 65.3
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 5.2e-115 418.3 310 67.4
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 1.5e-114 416.8 316 65.5
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 2.6e-114 416.0 317 66.9
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 5.7e-114 414.8 316 64.6
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 9.8e-114 414.1 363 59.5
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.7e-113 413.3 315 65.1
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 1.7e-113 413.3 310 66.1
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 2.8e-113 412.5 316 64.9
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 2.8e-113 412.5 315 67.0
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 2.8e-113 412.5 313 65.2
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 4.8e-113 411.8 314 64.6
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 6.3e-113 411.4 315 66.0
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 1.1e-112 410.6 282 71.3
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 2.4e-112 409.5 314 64.3
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 9.1e-112 407.5 307 68.4
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.6e-111 406.8 312 62.8
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.6e-111 406.8 313 64.2
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 2.7e-111 406.0 314 62.7
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.0e-110 404.1 314 63.7
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 1.3e-110 403.7 313 63.9
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 1.3e-110 403.7 309 63.4
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 1.3e-110 403.7 325 63.7
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 8.5e-110 401.0 309 63.1
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.5e-109 400.2 315 62.9
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 1.5e-109 400.2 283 70.0
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 7.2e-109 397.9 315 63.2
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 7.2e-109 397.9 324 60.8
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 8.0e-108 394.4 314 62.4
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 1.4e-107 393.7 312 62.5
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 2.3e-107 392.9 312 62.5
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 4.0e-107 392.1 315 63.2
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.2e-106 390.6 315 62.5
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.2e-106 390.6 315 62.5
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.5e-106 390.2 281 69.4
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 2.0e-106 389.8 309 63.4
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.2e-105 386.3 317 62.1
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 2.8e-105 386.0 316 62.7
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 3.7e-105 385.6 312 62.5
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 6.3e-105 384.8 281 64.1
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 1.2e-103 380.6 314 61.1
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 7.7e-103 377.9 275 66.2
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 7.7e-103 377.9 312 62.5
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.7e-102 376.7 314 62.7
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 2.3e-102 376.3 313 59.7
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 7.2e-101 371.3 315 61.0
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 9.5e-101 370.9 266 67.3
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 9.5e-101 370.9 315 61.9
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 1.2e-100 370.5 314 59.9
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.8e-100 369.4 311 60.5
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 2.6e-98 362.8 334 55.1
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 7.5e-98 361.3 327 55.4
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 8.3e-97 357.8 278 64.7
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.4e-96 357.1 280 62.1
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 1.8e-96 356.7 290 60.3
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 9.2e-96 354.4 233 76.4
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 5.9e-95 351.7 243 72.4
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 1.1e-93 347.4 317 54.9
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 1.5e-93 347.1 324 53.4
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 2.8e-92 342.8 313 55.9
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 8.0e-92 341.3 316 55.7
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 4.0e-91 339.0 276 59.4
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 5.2e-91 338.6 313 57.5
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 6.8e-91 338.2 313 55.9
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.5e-90 337.0 315 56.2
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 2.6e-90 336.3 313 55.3
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 4.4e-90 335.5 313 55.0
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 2.9e-89 332.8 313 55.0
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 2.9e-89 332.8 313 55.0
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 2.9e-89 332.8 250 63.6
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 3.7e-89 332.4 313 55.6
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 8.3e-89 331.3 313 55.3
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 8.3e-89 331.3 313 55.0
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 8.3e-89 331.3 313 55.0
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.4e-88 330.5 313 55.3
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 2.4e-88 329.7 313 55.0
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 2.4e-88 329.7 278 58.3
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 4.1e-88 328.9 315 54.9
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 4.1e-88 328.9 243 65.8
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 7.0e-88 328.2 313 55.0
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 7.0e-88 328.2 309 55.0
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 7.8e-87 324.7 311 53.7
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 3.3e-85 319.3 285 56.1
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 3.6e-84 315.8 316 53.8
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 8.1e-84 314.7 282 55.3
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 3.4e-82 309.3 249 63.9
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 3.4e-82 309.3 250 62.4
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 1.7e-81 307.0 269 56.9
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 8.1e-76 288.1 316 51.6
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 1.3e-73 280.8 328 45.7
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 4.9e-73 278.9 325 46.2
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 4.6e-71 272.3 316 47.5
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 6.0e-71 271.9 276 48.9
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.2e-58 231.1 199 57.3
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 5.6e-53 212.2 191 53.4
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.9e-49 199.1 172 56.4
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 2.3e-46 190.3 194 54.6
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 1.5e-45 187.6 140 63.6
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 2.8e-44 183.3 288 39.6
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.8e-35 154.1 109 60.6
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.4e-32 144.4 112 66.1
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 1.1e-24 118.2 118 52.5
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 5.2e-14 82.8 267 28.1
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 4.5e-10 69.7 60 60.0


User provided reference genes

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