Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 0.0e+00 1451.8 722 100.0
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 2.4e-269 932.2 713 66.2
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 2.9e-254 882.1 716 62.6
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 3.6e-244 848.6 708 60.5
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 2.8e-241 839.0 711 60.3
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 9.1e-240 833.9 705 61.0
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 4.5e-239 831.6 705 60.6
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 7.2e-237 824.3 714 60.5
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 3.7e-233 812.0 674 62.2
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 2.0e-226 789.6 707 58.8
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 2.2e-225 786.2 736 55.6
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 1.1e-224 783.9 714 56.6
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 2.7e-223 779.2 709 56.7
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.1e-221 773.9 661 60.2
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 9.4e-221 770.8 762 54.3
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 6.3e-217 758.1 720 55.8
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 8.3e-217 757.7 661 59.5
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 1.4e-216 756.9 718 54.6
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 4.5e-215 751.9 708 55.4
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 1.7e-214 750.0 712 55.1
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 2.9e-214 749.2 704 54.7
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 1.1e-213 747.3 720 54.7
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 1.5e-213 746.9 711 55.6
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 6.8e-211 738.0 685 54.7
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.5e-210 736.9 709 55.1
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 2.0e-210 736.5 716 53.4
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 1.1e-208 730.7 711 54.6
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 2.4e-208 729.6 714 54.8
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 1.2e-207 727.2 712 54.4
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 1.6e-207 726.9 715 53.1
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.6e-207 726.9 712 54.4
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 2.0e-207 726.5 706 52.8
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 4.5e-207 725.3 708 52.7
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 8.6e-206 721.1 739 52.4
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 1.5e-205 720.3 715 53.8
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 3.3e-205 719.2 713 51.2
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 8.0e-204 714.5 715 52.9
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 1.8e-203 713.4 707 51.9
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 1.2e-202 710.7 710 49.9
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 1.2e-202 710.7 714 52.5
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 2.0e-202 709.9 705 52.8
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 1.3e-201 707.2 680 55.9
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.3e-201 707.2 716 50.8
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 1.9e-200 703.4 642 57.6
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 7.0e-200 701.4 711 53.3
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 2.0e-199 699.9 712 53.1
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 7.8e-199 698.0 726 52.6
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 5.0e-198 695.3 689 53.4
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 5.0e-198 695.3 694 53.7
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 4.3e-197 692.2 738 50.9
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 1.1e-195 687.6 711 50.6
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 1.4e-195 687.2 715 51.7
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 5.2e-195 685.3 718 51.8
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 3.4e-194 682.6 699 52.5
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 1.3e-193 680.6 706 50.0
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 2.9e-193 679.5 714 51.1
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 4.1e-192 675.6 669 53.1
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 7.0e-192 674.9 759 49.0
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 1.3e-190 670.6 714 51.0
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 9.5e-189 664.5 712 51.3
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 8.1e-188 661.4 549 61.2
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 1.5e-186 657.1 717 48.8
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 2.0e-186 656.8 713 47.5
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.6e-186 656.4 699 51.2
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 2.1e-183 646.7 717 48.4
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 4.3e-181 639.0 707 48.2
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 5.2e-179 632.1 699 50.2
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 2.9e-177 626.3 721 47.3
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 3.8e-177 625.9 762 47.9
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 8.4e-177 624.8 661 50.4
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 2.4e-176 623.2 714 47.1
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 4.6e-175 619.0 714 47.2
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.0e-174 617.8 717 48.3
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.3e-174 617.5 720 47.2
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 6.6e-174 615.1 716 49.7
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 1.9e-173 613.6 714 46.6
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 3.3e-173 612.8 717 48.7
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 1.2e-172 610.9 715 46.7
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 2.8e-172 609.8 715 46.7
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 3.6e-172 609.4 719 45.6
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 4.0e-171 605.9 712 46.9
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 5.8e-170 602.1 710 46.9
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 2.4e-168 596.7 725 44.1
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 4.2e-168 595.9 745 45.0
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.7e-166 590.5 717 45.6
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 3.9e-166 589.3 721 45.5
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 3.9e-166 589.3 683 48.3
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.3e-164 584.3 667 45.3
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 3.1e-163 579.7 713 45.4
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 7.6e-162 575.1 651 48.5
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 7.1e-160 568.5 721 44.2
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 6.0e-159 565.5 684 45.5
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 4.0e-155 552.7 684 43.9
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.4e-152 544.3 643 47.0
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 3.8e-145 519.6 715 42.5
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 1.5e-138 497.7 577 47.5
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 2.2e-132 477.2 536 50.6
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.2e-130 471.5 818 38.4
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 1.7e-129 467.6 771 38.1
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 7.9e-127 458.8 771 36.4
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.1e-125 454.9 480 53.5
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 3.7e-124 449.9 646 40.1
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 6.3e-124 449.1 419 57.3
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 6.3e-124 449.1 506 49.0
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 2.0e-122 444.1 762 37.5
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 7.7e-122 442.2 519 48.7
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 8.5e-121 438.7 518 48.6
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.6e-119 434.5 710 35.9
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 3.0e-118 430.3 711 37.4
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.8e-102 377.9 374 52.1
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.3e-102 377.5 493 46.0
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 1.1e-96 358.6 271 62.4
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 2.8e-95 354.0 561 38.7
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 8.6e-89 332.4 256 62.5
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 2.0e-85 321.2 390 46.2
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 4.0e-78 297.0 333 46.8
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 5.4e-75 286.6 209 62.7
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 1.9e-72 278.1 383 41.5
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 6.6e-57 226.5 341 39.9
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 3.8e-52 210.7 129 72.9
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 8.4e-52 209.5 284 43.3
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 4.5e-29 134.0 109 64.2
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 1.1e-22 112.8 165 43.0
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 1.2e-21 109.4 189 36.0
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 4.5e-21 107.5 140 41.4
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.3e-20 105.9 126 42.9
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 5.0e-20 104.0 176 39.2
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 1.9e-19 102.1 135 45.2
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.5e-16 92.4 84 54.8
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 3.1e-14 84.7 75 56.0
RcHm_v2.0_Chr5g0028901 Rosa chinensis HOM05D005685 ORTHO05D007046 6.3e-07 60.5 40 70.0
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 8.2e-07 60.1 55 52.7
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 7.0e-06 57.0 130 28.5


User provided reference genes

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