Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 6.2e-296 1020.0 503 100.0
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.1e-223 780.0 483 77.4
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.6e-221 770.4 482 75.7
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 9.5e-220 766.9 480 76.0
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 1.4e-218 763.1 467 75.6
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.8e-218 762.7 479 76.8
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.0e-218 761.5 477 77.1
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.6e-217 758.8 477 74.2
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 6.0e-214 747.7 473 73.8
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.3e-213 745.7 452 79.6
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.9e-213 745.0 476 74.8
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.9e-212 742.7 468 75.2
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.3e-212 741.5 469 74.4
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 5.6e-212 741.1 477 73.6
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.3e-212 740.7 472 74.8
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 7.3e-212 740.7 477 74.0
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 9.5e-212 740.3 465 74.8
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.6e-211 739.6 477 73.4
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 3.6e-211 738.4 469 73.8
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.1e-210 736.9 476 72.5
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.4e-210 736.5 469 72.7
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.1e-210 735.3 469 72.5
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 6.8e-210 734.2 469 74.4
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 8.9e-210 733.8 477 74.2
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.2e-209 733.4 477 74.0
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 2.0e-209 732.6 480 74.2
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 2.6e-209 732.3 473 73.8
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 2.6e-209 732.3 477 74.0
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 4.4e-209 731.5 546 67.2
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 7.5e-209 730.7 467 74.3
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 9.8e-209 730.3 479 72.4
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 2.2e-208 729.2 471 74.1
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 2.2e-208 729.2 467 73.4
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 2.9e-208 728.8 469 74.0
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 4.9e-208 728.0 471 73.5
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 6.4e-208 727.6 473 72.5
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 8.3e-208 727.2 478 72.4
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.4e-207 726.5 470 73.4
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.9e-207 726.1 478 72.6
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 9.2e-207 723.8 468 72.9
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.2e-207 723.8 469 71.4
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 1.6e-206 723.0 477 72.3
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.1e-206 722.6 474 72.2
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 2.1e-206 722.6 470 71.9
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 2.1e-206 722.6 479 72.4
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 3.5e-206 721.8 471 73.0
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 4.6e-206 721.5 476 71.6
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 6.0e-206 721.1 477 71.9
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.7e-205 719.5 470 73.4
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.3e-205 719.2 484 73.3
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 1.1e-204 716.8 466 73.2
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 1.9e-204 716.1 477 71.1
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 3.3e-204 715.3 469 73.8
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.6e-203 713.0 474 71.9
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.1e-202 710.3 465 72.9
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 1.8e-202 709.5 467 72.2
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 2.3e-202 709.1 472 71.6
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.5e-201 706.4 446 74.7
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.0e-201 706.1 469 70.8
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 5.8e-201 704.5 470 71.1
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 2.9e-200 702.2 469 71.0
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 3.8e-200 701.8 469 70.8
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 4.9e-200 701.4 449 73.7
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 7.8e-198 694.1 468 70.3
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 3.9e-197 691.8 430 75.3
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.1e-195 686.0 483 70.8
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 3.6e-195 685.3 438 74.4
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 4.7e-195 684.9 470 70.6
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 4.0e-194 681.8 475 69.3
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 7.6e-193 677.6 475 68.4
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 9.9e-193 677.2 477 69.4
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 4.2e-191 671.8 474 68.6
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.7e-190 669.1 470 70.6
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 3.5e-190 668.7 481 66.9
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 4.6e-190 668.3 472 68.2
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 3.9e-189 665.2 427 74.2
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 6.6e-189 664.5 472 69.3
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 4.8e-187 658.3 476 67.2
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 4.8e-187 658.3 476 66.8
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 2.0e-185 652.9 470 67.4
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 1.3e-184 650.2 469 67.8
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 6.4e-184 647.9 533 62.9
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 8.4e-184 647.5 469 67.2
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-183 647.1 470 67.4
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.1e-182 642.9 477 65.6
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 3.5e-182 642.1 469 67.4
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.5e-182 642.1 511 61.6
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 4.6e-182 641.7 470 66.8
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.3e-181 640.2 467 66.6
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.3e-181 639.4 471 67.7
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 3.0e-181 639.0 481 66.5
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.9e-181 638.6 500 63.6
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 3.9e-181 638.6 469 66.7
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 6.7e-181 637.9 469 66.7
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-180 637.1 468 66.9
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.5e-180 636.7 468 66.5
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.5e-180 636.7 468 66.5
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 2.5e-180 636.0 477 65.0
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 7.4e-180 634.4 469 65.7
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 9.6e-180 634.0 422 71.6
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.1e-178 630.6 466 67.2
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.4e-175 620.2 470 65.5
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.6e-172 608.2 469 63.3
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.6e-171 606.7 408 72.5
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.8e-171 605.9 440 66.8
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 8.2e-171 604.4 416 68.5
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 2.4e-170 602.8 484 64.0
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.7e-163 578.9 477 63.7
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 3.4e-161 572.4 363 72.5
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.7e-158 562.8 484 58.9
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.9e-157 558.9 349 75.6
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 4.8e-155 552.0 511 56.9
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 4.5e-153 545.4 494 56.9
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.2e-147 526.6 476 57.4
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 6.3e-147 525.0 476 58.2
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.4e-146 523.1 361 67.3
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 7.7e-145 518.1 483 57.1
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.6e-134 483.8 471 51.8
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 8.5e-128 461.5 547 46.4
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.8e-117 427.2 466 49.1
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 6.8e-117 425.2 270 72.6
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 9.8e-108 394.8 306 61.4
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.1e-106 389.4 329 61.4
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 6.6e-104 382.1 243 76.1
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.4e-93 347.8 485 44.7
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 7.3e-87 325.5 379 45.4
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.8e-86 323.6 285 60.0
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.0e-80 303.5 272 58.1
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 6.6e-80 302.4 199 70.4
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 2.4e-77 293.9 483 38.5
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.2e-73 281.6 248 60.9
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.1e-72 276.2 272 50.4
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 7.6e-68 262.3 506 35.6
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.5e-63 247.3 482 36.5
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 4.0e-61 240.0 458 36.2
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 8.2e-54 215.7 209 54.5
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.1e-53 213.8 170 62.9
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.0e-53 213.4 297 43.4
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 3.8e-51 206.8 198 55.1
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 8.4e-51 205.7 181 56.9
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.1e-45 188.7 111 76.6
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.2e-44 185.3 111 74.8
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.5e-44 183.3 111 73.9
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 2.1e-41 174.5 197 49.7
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.0e-40 172.2 124 66.9
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 9.7e-39 165.6 113 72.6
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.2e-36 158.7 319 33.9
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.2e-36 158.7 105 71.4
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.2e-35 154.5 111 64.9
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 9.4e-34 149.1 92 73.9
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 2.3e-32 144.4 122 59.0
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 2.6e-31 141.0 116 61.2
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.0e-27 126.7 67 88.1
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 3.7e-22 110.5 69 78.3
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 2.4e-21 107.8 125 50.4
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 8.8e-16 89.4 58 70.7
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 2.2e-14 84.7 62 62.9
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 3.2e-10 70.9 56 64.3
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 4.0e-08 63.9 39 87.2
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 8.8e-08 62.8 39 84.6
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 2.0e-07 61.6 45 64.4
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 5.7e-07 60.1 46 56.5


User provided reference genes

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