Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g09720 Coffea canephora HOM05D002937 ORTHO05D003063 3.0e-54 214.9 109 100.0
Dinv07110 Davidia involucrata HOM05D002937 ORTHO05D003063 8.3e-20 100.5 87 60.9
Haze_13532 Corylus avellana HOM05D002937 ORTHO05D003063 7.0e-19 97.4 90 56.7
Duzib130G0003 Durio zibethinus HOM05D002937 ORTHO05D003063 9.2e-19 97.1 87 57.5
Duzib138G0378 Durio zibethinus HOM05D002937 ORTHO05D003063 9.2e-19 97.1 87 57.5
QL08p044878 Quercus lobata HOM05D002937 ORTHO05D003063 5.9e-18 94.4 80 60.0
MD09G1149600 Malus domestica HOM05D002937 ORTHO05D003063 1.3e-17 93.2 74 62.2
TWI23G0574 Tripterygium wilfordii HOM05D002937 ORTHO05D003063 2.3e-17 92.4 80 58.8
Aqoxy1G01733 Aquilegia oxysepala HOM05D002937 ORTHO05D003063 5.0e-17 91.3 85 49.4
Sabra05G0154900 Salix brachista HOM05D002937 ORTHO05D003063 6.6e-17 90.9 88 54.5
TAR627G0618 Trochodendron aralioides HOM05D002937 ORTHO05D003063 6.6e-17 90.9 85 58.8
Cfa023073 Carpinus fangiana HOM05D002937 ORTHO05D003063 8.6e-17 90.5 82 59.8
MD17G1136300 Malus domestica HOM05D002937 ORTHO05D003063 8.6e-17 90.5 75 60.0
Sabra02G0047200 Salix brachista HOM05D002937 ORTHO05D003063 1.1e-16 90.1 88 54.5
Dinv04596 Davidia involucrata HOM05D002937 ORTHO05D003063 1.5e-16 89.7 55 74.5
Lsat_1_v5_gn_9_9080 Lactuca sativa HOM05D002937 ORTHO05D003063 1.5e-16 89.7 100 51.0
Prupe.3G176500 Prunus persica HOM05D002937 ORTHO05D003063 1.5e-16 89.7 86 55.8
Thecc.01G170100 Theobroma cacao HOM05D002937 ORTHO05D003063 2.5e-16 89.0 78 56.4
Gohir.A07G183400 Gossypium hirsutum HOM05D002937 ORTHO05D003063 3.3e-16 88.6 81 56.8
Gorai.001G211700 Gossypium raimondii HOM05D002937 ORTHO05D003063 3.3e-16 88.6 81 56.8
TWI59G0307 Tripterygium wilfordii HOM05D002937 ORTHO05D003063 3.3e-16 88.6 85 51.8
MBI10_g21111_MAGBIO Magnolia biondii HOM05D002937 ORTHO05D003063 4.3e-16 88.2 86 52.3
EL10Ac8g19737 Beta vulgaris HOM05D002937 ORTHO05D003063 7.3e-16 87.4 90 45.6
COL.COLO4_08895 Corchorus olitorius HOM05D002937 ORTHO05D003063 7.3e-16 87.4 82 57.3
Rhsim02G0197100 Rhododendron simsii HOM05D002937 ORTHO05D003063 7.3e-16 87.4 69 60.9
Lj1P601T11 Lonicera japonica HOM05D002937 ORTHO05D003063 1.2e-15 86.7 55 67.3
Nn4g26538 Nelumbo nucifera HOM05D002937 ORTHO05D003063 1.2e-15 86.7 54 72.2
MELO3C026969.2 Cucumis melo HOM05D002937 ORTHO05D003063 1.6e-15 86.3 64 62.5
Gohir.D06G142100 Gossypium hirsutum HOM05D002937 ORTHO05D003063 1.6e-15 86.3 96 47.9
Gorai.010G165900 Gossypium raimondii HOM05D002937 ORTHO05D003063 1.6e-15 86.3 96 47.9
Manes.02G088400 Manihot esculenta HOM05D002937 ORTHO05D003063 1.6e-15 86.3 92 50.0
Manes.01G130600 Manihot esculenta HOM05D002937 ORTHO05D003063 2.1e-15 85.9 91 48.4
ATR0585G027 Amborella trichopoda HOM05D002937 ORTHO05D003063 2.8e-15 85.5 95 46.3
CANSAT64G1817 Cannabis sativa HOM05D002937 ORTHO05D003063 2.8e-15 85.5 87 54.0
Glyma.02G285000 Glycine max HOM05D002937 ORTHO05D003063 2.8e-15 85.5 79 55.7
Potri.005G204300 Populus trichocarpa HOM05D002937 ORTHO05D003063 2.8e-15 85.5 85 52.9
Cpa.g.sc50.105 Carica papaya HOM05D002937 ORTHO05D003063 3.6e-15 85.1 79 58.2
Duzib192G0067 Durio zibethinus HOM05D002937 ORTHO05D003063 3.6e-15 85.1 80 50.0
FAN14G0735 Fragaria x ananassa HOM05D002937 ORTHO05D003063 4.7e-15 84.7 76 51.3
Nitab4.5_0002251g0100 Nicotiana tabacum HOM05D002937 ORTHO05D003063 4.7e-15 84.7 86 51.2
Peaxi162Scf00111g00231 Petunia axillaris HOM05D002937 ORTHO05D003063 4.7e-15 84.7 92 47.8
Duzib133G0706 Durio zibethinus HOM05D002937 ORTHO05D003063 6.1e-15 84.3 85 50.6
VMungo0647G0626 Vigna mungo HOM05D002937 ORTHO05D003063 6.1e-15 84.3 82 53.7
Gohir.A06G137100 Gossypium hirsutum HOM05D002937 ORTHO05D003063 8.0e-15 84.0 96 46.9
CsaV3_4G031930 Cucumis sativus L. HOM05D002937 ORTHO05D003063 1.0e-14 83.6 58 63.8
DCAR_009814 Daucus carota HOM05D002937 ORTHO05D003063 1.0e-14 83.6 94 47.9
Duzib235G1174 Durio zibethinus HOM05D002937 ORTHO05D003063 1.0e-14 83.6 81 49.4
Sed0026027 Sechium edule HOM05D002937 ORTHO05D003063 1.0e-14 83.6 64 60.9
Nn3g20702 Nelumbo nucifera HOM05D002937 ORTHO05D003063 1.4e-14 83.2 95 49.5
SalBow7G3367 Salvia bowleyana HOM05D002937 ORTHO05D003063 1.4e-14 83.2 66 57.6
TPR.G16772 Trifolium pratense HOM05D002937 ORTHO05D003063 1.4e-14 83.2 71 57.7
GSVIVG01020846001 Vitis vinifera HOM05D002937 ORTHO05D003063 1.4e-14 83.2 84 50.0
Dinv30727 Davidia involucrata HOM05D002937 ORTHO05D003063 1.8e-14 82.8 84 53.6
Manes.15G120400 Manihot esculenta HOM05D002937 ORTHO05D003063 3.0e-14 82.0 94 43.6
Gorai.001G092200 Gossypium raimondii HOM05D002937 ORTHO05D003063 4.0e-14 81.6 86 50.0
Ciclev10032788m.g Citrus clementina HOM05D002937 ORTHO05D003063 5.2e-14 81.3 54 64.8
PSO170G4755 Papaver somniferum HOM05D002937 ORTHO05D003063 5.2e-14 81.3 78 51.3
Gohir.D07G190000 Gossypium hirsutum HOM05D002937 ORTHO05D003063 6.8e-14 80.9 78 53.8
Gohir.D11G163850 Gossypium hirsutum HOM05D002937 ORTHO05D003063 6.8e-14 80.9 107 43.9
Gorai.007G174600 Gossypium raimondii HOM05D002937 ORTHO05D003063 6.8e-14 80.9 107 43.9
Gorai.011G042700 Gossypium raimondii HOM05D002937 ORTHO05D003063 6.8e-14 80.9 90 45.6
Thecc.06G152300 Theobroma cacao HOM05D002937 ORTHO05D003063 6.8e-14 80.9 90 46.7
vmacro09185 Vaccinium macrocarpon HOM05D002937 ORTHO05D003063 6.8e-14 80.9 57 64.9
Gohir.A10G039700 Gossypium hirsutum HOM05D002937 ORTHO05D003063 8.9e-14 80.5 89 46.1
Actinidia26765 Actinidia chinensis HOM05D002937 ORTHO05D003063 1.2e-13 80.1 98 45.9
Hma1.2p1_0286F.1_g114125 Hydrangea macrophylla HOM05D002937 ORTHO05D003063 1.2e-13 80.1 98 46.9
Gohir.A07G080600 Gossypium hirsutum HOM05D002937 ORTHO05D003063 1.5e-13 79.7 86 50.0
Nitab4.5_0001883g0010 Nicotiana tabacum HOM05D002937 ORTHO05D003063 1.5e-13 79.7 55 61.8
PSO357G0138 Papaver somniferum HOM05D002937 ORTHO05D003063 1.5e-13 79.7 63 58.7
RcHm_v2.0_Chr2g0151991 Rosa chinensis HOM05D002937 ORTHO05D003063 2.0e-13 79.3 72 54.2
Gohir.D07G086200 Gossypium hirsutum HOM05D002937 ORTHO05D003063 2.6e-13 79.0 86 50.0
HanXRQChr10g0281121 Helianthus annuus HOM05D002937 ORTHO05D003063 2.6e-13 79.0 80 52.5
CAN.G177.6 Capsicum annuum HOM05D002937 ORTHO05D003063 3.4e-13 78.6 60 63.3
Lj6g0015620 Lotus japonicus HOM05D002937 ORTHO05D003063 3.4e-13 78.6 86 48.8
Lj1A1186G51 Lonicera japonica HOM05D002937 ORTHO05D003063 4.4e-13 78.2 82 50.0
Cfa000957 Carpinus fangiana HOM05D002937 ORTHO05D003063 5.8e-13 77.8 94 41.5
Gohir.A11G156800 Gossypium hirsutum HOM05D002937 ORTHO05D003063 7.5e-13 77.4 98 44.9
Phvul.006G022300 Phaseolus vulgaris HOM05D002937 ORTHO05D003063 7.5e-13 77.4 86 50.0
Haze_05578 Corylus avellana HOM05D002937 ORTHO05D003063 9.8e-13 77.0 91 40.7
Medtr3g046760 Medicago truncatula HOM05D002937 ORTHO05D003063 9.8e-13 77.0 84 47.6
PGSC0003DMG400017352 Solanum tuberosum HOM05D002937 ORTHO05D003063 9.8e-13 77.0 93 44.1
Lalb_Chr07g0191291 Lupinus albus HOM05D002937 ORTHO05D003063 1.3e-12 76.6 66 50.0
arahy.Tifrunner.gnm1.ann1.CFG5D5 Arachis hypogaea HOM05D002937 ORTHO05D003063 2.2e-12 75.9 63 52.4
Glyma.18G109600 Glycine max HOM05D002937 ORTHO05D003063 2.2e-12 75.9 79 48.1
VMungo0540G2215 Vigna mungo HOM05D002937 ORTHO05D003063 2.2e-12 75.9 69 49.3
Solyc07g056230.3 Solanum lycopersicum HOM05D002937 ORTHO05D003063 3.7e-12 75.1 97 43.3
Actinidia39564 Actinidia chinensis HOM05D002937 ORTHO05D003063 4.9e-12 74.7 86 46.5
Glyma.08G308000 Glycine max HOM05D002937 ORTHO05D003063 6.4e-12 74.3 80 48.8
Atru.chr10.1271 Acer truncatum HOM05D002937 ORTHO05D003063 8.3e-12 73.9 92 45.7
FvH4_6g38580 Fragaria vesca HOM05D002937 ORTHO05D003063 1.9e-11 72.8 72 50.0
Psat5g195400 Pisum sativum HOM05D002937 ORTHO05D003063 1.9e-11 72.8 55 60.0
Psat7g090120 Pisum sativum HOM05D002937 ORTHO05D003063 1.9e-11 72.8 81 46.9
Sabra11G0067600 Salix brachista HOM05D002937 ORTHO05D003063 1.9e-11 72.8 80 47.5
Sopen07g029590 Solanum pennellii HOM05D002937 ORTHO05D003063 1.9e-11 72.8 93 41.9
Actinidia07686 Actinidia chinensis HOM05D002937 ORTHO05D003063 2.4e-11 72.4 104 37.5
arahy.Tifrunner.gnm1.ann1.C42E7X Arachis hypogaea HOM05D002937 ORTHO05D003063 2.4e-11 72.4 56 55.4
QL05p058801 Quercus lobata HOM05D002937 ORTHO05D003063 2.4e-11 72.4 86 46.5
CAN.G650.22 Capsicum annuum HOM05D002937 ORTHO05D003063 3.2e-11 72.0 81 48.1
TPR.G4834 Trifolium pratense HOM05D002937 ORTHO05D003063 3.2e-11 72.0 82 42.7
HPP92_023300 Vanilla planifolia HOM05D002937 ORTHO05D003063 3.2e-11 72.0 78 47.4
LjContig00049g0009686 Lotus japonicus HOM05D002937 ORTHO05D003063 4.1e-11 71.6 95 40.0
HPP92_023265 Vanilla planifolia HOM05D002937 ORTHO05D003063 4.1e-11 71.6 78 47.4
ECA232G2777 Erigeron canadensis HOM05D002937 ORTHO05D003063 5.4e-11 71.2 84 42.9
ECA248G3567 Erigeron canadensis HOM05D002937 ORTHO05D003063 5.4e-11 71.2 84 42.9
HanXRQChr02g0047331 Helianthus annuus HOM05D002937 ORTHO05D003063 5.4e-11 71.2 94 42.6
Potri.011G080400 Populus trichocarpa HOM05D002937 ORTHO05D003063 5.4e-11 71.2 80 47.5
Lalb_Chr07g0188591 Lupinus albus HOM05D002937 ORTHO05D003063 7.0e-11 70.9 82 43.9
Manes.17G068900 Manihot esculenta HOM05D002937 ORTHO05D003063 7.0e-11 70.9 88 43.2
Cpa.g.sc166.22 Carica papaya HOM05D002937 ORTHO05D003063 9.2e-11 70.5 82 42.7
CiPaw.10G092800 Carya illinoinensis HOM05D002937 ORTHO05D003063 9.2e-11 70.5 97 43.3
MD10G1263600 Malus domestica HOM05D002937 ORTHO05D003063 9.2e-11 70.5 86 45.3
RcHm_v2.0_Chr5g0013761 Rosa chinensis HOM05D002937 ORTHO05D003063 9.2e-11 70.5 88 46.6
Sabra11G0069900 Salix brachista HOM05D002937 ORTHO05D003063 9.2e-11 70.5 80 46.2
Dinv32270 Davidia involucrata HOM05D002937 ORTHO05D003063 1.2e-10 70.1 47 66.0
Nitab4.5_0001655g0080 Nicotiana tabacum HOM05D002937 ORTHO05D003063 1.2e-10 70.1 48 66.7
Nitab4.5_0005219g0110 Nicotiana tabacum HOM05D002937 ORTHO05D003063 1.2e-10 70.1 48 66.7
Eucgr.E02407 Eucalyptus grandis HOM05D002937 ORTHO05D003063 2.0e-10 69.3 59 54.2
Carub.0007s2302 Capsella rubella HOM05D002937 ORTHO05D003063 2.7e-10 68.9 84 42.9
CAN.G585.23 Capsicum annuum HOM05D002937 ORTHO05D003063 2.7e-10 68.9 95 37.9
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 2.7e-10 68.9 50 50.0
Sopen02g019740 Solanum pennellii HOM05D002937 ORTHO05D003063 4.6e-10 68.2 48 66.7
Prupe.4G079100 Prunus persica HOM05D002937 ORTHO05D003063 6.0e-10 67.8 99 40.4
Solyc02g070660.3 Solanum lycopersicum HOM05D002937 ORTHO05D003063 6.0e-10 67.8 48 66.7
Ciclev10018176m.g Citrus clementina HOM05D002937 ORTHO05D003063 7.8e-10 67.4 89 40.4
CiPaw.09G125400 Carya illinoinensis HOM05D002937 ORTHO05D003063 1.0e-09 67.0 91 39.6
Eucgr.A02016 Eucalyptus grandis HOM05D002937 ORTHO05D003063 1.0e-09 67.0 86 41.9
CANSAT35G0111 Cannabis sativa HOM05D002937 ORTHO05D003063 1.3e-09 66.6 81 44.4
Lj4g0025062 Lotus japonicus HOM05D006198 ORTHO05D003063 1.3e-09 66.6 84 41.7
BcaNung05670 Brassica carinata HOM05D002937 ORTHO05D003063 1.7e-09 66.2 81 40.7
A03p51170 Brassica napus HOM05D006198 ORTHO05D003063 1.7e-09 66.2 81 40.7
BraA03t14199Z Brassica rapa HOM05D006198 ORTHO05D003063 1.7e-09 66.2 81 40.7
FvH4_3g05770 Fragaria vesca HOM05D002937 ORTHO05D003063 1.7e-09 66.2 99 42.4
Sp7g15800 Schrenkiella parvula HOM05D002937 ORTHO05D003063 1.7e-09 66.2 86 38.4
FAN21G2892 Fragaria x ananassa HOM05D001706 ORTHO05D003063 2.3e-09 65.9 110 40.9
LjContig00141g0012589 Lotus japonicus HOM05D002937 ORTHO05D003063 3.0e-09 65.5 66 47.0
C07p49570 Brassica napus HOM05D006198 ORTHO05D003063 3.9e-09 65.1 83 39.8
BolC7t45461H Brassica oleracea HOM05D006198 ORTHO05D003063 3.9e-09 65.1 81 40.7
Thhalv10024846m.g Eutrema salsugineum HOM05D006198 ORTHO05D003063 3.9e-09 65.1 85 43.5
CARHR225060 Cardamine hirsuta HOM05D002937 ORTHO05D003063 6.6e-09 64.3 85 37.6
FAN25G1262 Fragaria x ananassa HOM05D001706 ORTHO05D003063 6.6e-09 64.3 110 40.0
Lsat_1_v5_gn_1_97701 Lactuca sativa HOM05D002937 ORTHO05D003063 6.6e-09 64.3 45 60.0
PGR042G0397 Punica granatum HOM05D002937 ORTHO05D003063 6.6e-09 64.3 87 40.2
PGR042G2846 Punica granatum HOM05D002937 ORTHO05D003063 6.6e-09 64.3 58 53.4
PGSC0003DMG400008286 Solanum tuberosum HOM05D002937 ORTHO05D003063 6.6e-09 64.3 48 64.6
TWI73G0053 Tripterygium wilfordii HOM05D002937 ORTHO05D003063 6.6e-09 64.3 82 41.5
LjContig00141g0001088 Lotus japonicus HOM05D002937 ORTHO05D003063 8.6e-09 63.9 59 50.8
Medtr4g096780 Medicago truncatula HOM05D002937 ORTHO05D003063 8.6e-09 63.9 82 39.0
FAN11G3247 Fragaria x ananassa HOM05D002937 ORTHO05D003063 1.1e-08 63.5 95 43.2
Hund21525 Selenicereus undatus HOM05D002937 ORTHO05D003063 1.1e-08 63.5 58 44.8
Sc17g0004980 Simmondsia chinensis HOM05D002937 ORTHO05D003063 1.1e-08 63.5 84 39.3
THA.LOC104816083 Tarenaya hassleriana HOM05D002937 ORTHO05D003063 1.1e-08 63.5 57 52.6
Atru.chr6.2056 Acer truncatum HOM05D002937 ORTHO05D003063 1.5e-08 63.2 56 55.4
FAN16G2998 Fragaria x ananassa HOM05D001706 ORTHO05D003063 1.5e-08 63.2 99 41.4
Phvul.002G193700 Phaseolus vulgaris HOM05D002937 ORTHO05D003063 1.5e-08 63.2 83 42.2
VMungo0251G3351 Vigna mungo HOM05D002937 ORTHO05D003063 1.9e-08 62.8 75 46.7
Ah.09g232680 Amaranthus hybridus HOM05D002937 ORTHO05D003063 2.5e-08 62.4 47 59.6
AT4G18260 Arabidopsis thaliana HOM05D002937 ORTHO05D003063 2.5e-08 62.4 87 39.1
HPP92_024627 Vanilla planifolia HOM05D002937 ORTHO05D003063 2.5e-08 62.4 92 40.2
arahy.Tifrunner.gnm1.ann1.Y2ZVX9 Arachis hypogaea HOM05D002937 ORTHO05D003063 4.3e-08 61.6 70 47.1
Migut.E01773 Erythranthe guttata HOM05D002937 ORTHO05D003063 4.3e-08 61.6 59 50.8
Cc09_g09350 Coffea canephora HOM05D002937 ORTHO05D003063 5.6e-08 61.2 81 43.2
Glyma.05G130200 Glycine max HOM05D002937 ORTHO05D003063 5.6e-08 61.2 63 47.6
Aa31LG6G950 Aethionema arabicum HOM05D006198 ORTHO05D008226 7.3e-08 60.8 74 43.2
arahy.Tifrunner.gnm1.ann1.VW63YQ Arachis hypogaea HOM05D002937 ORTHO05D003063 9.5e-08 60.5 85 42.4
MSTRG.16231 Avicennia marina HOM05D002937 ORTHO05D003063 9.5e-08 60.5 90 38.9
AL7G36130 Arabidopsis lyrata HOM05D006198 ORTHO05D003063 1.2e-07 60.1 85 31.8
Migut.H01368 Erythranthe guttata HOM05D002937 ORTHO05D003063 1.6e-07 59.7 82 40.2
Glyma.08G085000 Glycine max HOM05D002937 ORTHO05D003063 2.8e-07 58.9 63 47.6
THA.LOC109115990 Tarenaya hassleriana HOM05D002937 ORTHO05D003063 2.8e-07 58.9 71 42.3
CiPaw.03G192200 Carya illinoinensis HOM05D002937 ORTHO05D003063 3.6e-07 58.5 35 71.4
THA.LOC104826238 Tarenaya hassleriana HOM05D002937 ORTHO05D003063 6.2e-07 57.8 60 46.7
vmacro11012 Vaccinium macrocarpon HOM05D002937 ORTHO05D003063 6.2e-07 57.8 65 44.6
Os05g0565100 Oryza sativa ssp. japonica HOM05D002937 ORTHO05D003063 1.1e-06 57.0 51 43.1
CAN.G942.17 Capsicum annuum HOM05D000077 ORTHO05D000552 1.4e-06 56.6 38 68.4
BolC1t01181H Brassica oleracea HOM05D002937 ORTHO05D003063 1.8e-06 56.2 56 44.6
Nitab4.5_0001701g0140 Nicotiana tabacum HOM05D002937 ORTHO05D003063 3.1e-06 55.5 116 33.6
MELO3C002720.2 Cucumis melo HOM05D002937 ORTHO05D003063 4.0e-06 55.1 82 41.5
CsaV3_1G032600 Cucumis sativus L. HOM05D002937 ORTHO05D003063 5.2e-06 54.7 82 41.5
Potri.002G057900 Populus trichocarpa HOM05D002937 ORTHO05D003063 5.2e-06 54.7 35 62.9
BcaC09g51539 Brassica carinata HOM05D002937 ORTHO05D003063 8.9e-06 53.9 47 51.1
ClCG03G007050 Citrullus lanatus HOM05D002937 ORTHO05D003063 8.9e-06 53.9 48 54.2
THA.LOC104806125 Tarenaya hassleriana HOM05D002937 ORTHO05D003063 8.9e-06 53.9 88 34.1


User provided reference genes

Program Settings