Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1523.5 842 100.0
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1232.2 859 78.3
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1231.9 859 78.0
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1224.9 859 78.2
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1213.7 851 79.0
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1195.6 842 76.4
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1194.5 847 76.7
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1193.3 841 78.8
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1182.5 896 73.5
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1168.7 794 79.5
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1162.5 848 75.5
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1139.8 839 72.7
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1136.7 845 74.1
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1136.3 841 73.1
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1134.0 839 73.5
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 0.0e+00 1134.0 843 72.4
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1131.7 839 73.2
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 0.0e+00 1122.8 849 72.7
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1122.1 843 73.7
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1117.8 833 72.3
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1116.7 839 72.3
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1113.2 843 70.9
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 0.0e+00 1113.2 913 68.3
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1110.9 828 72.2
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1110.9 838 71.8
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1110.9 838 72.6
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1108.2 840 71.4
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1105.5 846 70.8
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1104.0 861 71.9
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1103.6 844 74.6
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1102.8 841 71.2
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1102.8 844 74.5
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1099.0 861 71.5
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1097.8 845 73.4
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1097.8 843 71.9
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1097.8 844 70.3
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1097.4 838 69.6
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1097.4 836 70.3
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1094.7 844 70.5
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1093.6 837 69.7
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1091.6 791 74.0
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1091.6 837 69.5
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1088.2 837 69.3
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1087.0 844 69.2
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1086.6 838 68.9
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1086.2 832 70.6
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1084.3 846 71.9
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1082.8 840 70.1
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1082.4 837 68.8
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1080.9 837 68.8
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1079.7 796 71.4
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1078.2 834 69.9
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1077.0 846 72.0
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 791 73.1
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 839 71.2
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 1.2e-311 1072.8 846 71.9
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 2.3e-311 1072.0 842 72.2
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 2.3e-311 1072.0 840 70.4
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 5.2e-311 1070.8 846 71.7
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 7.4e-310 1067.0 838 69.5
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 1.3e-309 1066.2 850 71.8
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 1.3e-309 1066.2 794 71.8
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 8.2e-309 1063.5 841 69.1
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 1.8e-308 1062.4 761 74.1
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 2.4e-308 1062.0 841 71.2
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 7.7e-307 1057.0 843 68.7
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 2.3e-303 1045.4 839 68.5
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 2.0e-302 1042.3 882 67.6
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 4.4e-302 1041.2 843 67.1
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 5.7e-302 1040.8 837 68.2
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 4.8e-301 1037.7 841 67.9
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 4.8e-301 1037.7 759 72.6
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 6.3e-301 1037.3 843 67.0
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 5.3e-300 1034.2 839 67.1
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 1.2e-299 1033.1 950 61.7
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 1.6e-299 1032.7 835 68.1
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 2.0e-299 1032.3 827 68.4
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 2.6e-299 1031.9 835 68.4
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 3.5e-299 1031.6 827 68.2
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 7.7e-299 1030.4 840 68.1
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 7.7e-299 1030.4 835 68.0
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 5.5e-297 1024.2 843 69.5
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 7.2e-297 1023.8 836 66.9
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 3.6e-296 1021.5 830 70.4
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 4.7e-296 1021.1 843 67.3
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 2.6e-294 1015.4 836 67.2
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 4.8e-293 1011.1 835 66.3
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 3.1e-292 1008.4 830 68.8
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 7.7e-291 1003.8 835 66.1
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 7.7e-291 1003.8 835 66.1
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 5.7e-286 987.6 759 69.3
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 1.6e-283 979.5 832 65.9
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 2.0e-283 979.2 757 72.4
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 4.5e-283 978.0 733 70.5
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 4.5e-283 978.0 648 76.7
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 2.3e-282 975.7 674 73.9
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 7.2e-281 970.7 648 76.1
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 6.1e-280 967.6 838 61.5
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 6.8e-279 964.1 837 64.9
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 7.0e-276 954.1 834 61.2
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 3.9e-274 948.3 937 62.4
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 2.5e-273 945.7 670 71.8
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 1.0e-266 923.7 640 75.9
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 2.0e-262 909.4 573 80.3
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 4.4e-262 908.3 790 58.6
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.7e-261 906.4 790 64.9
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 5.4e-260 901.4 836 59.4
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 9.5e-257 890.6 627 72.4
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 4.4e-254 881.7 796 56.8
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.3e-250 870.2 795 56.1
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 4.9e-237 825.1 790 53.8
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.5e-230 803.5 856 57.7
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 7.1e-228 794.7 842 60.1
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 1.2e-227 793.9 800 52.0
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 2.6e-185 653.3 429 77.2
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 3.3e-164 583.2 483 66.9
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.0e-150 537.3 439 67.9
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 4.4e-129 466.5 324 74.4
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 6.2e-123 446.0 794 35.0
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 1.7e-120 438.0 766 35.8
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 6.4e-120 436.0 401 61.8
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.3e-117 427.6 306 70.3
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 4.5e-113 413.3 279 76.0
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 2.5e-103 380.9 392 63.3
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 1.3e-99 368.6 853 31.2
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.7e-91 340.5 300 64.7
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.2e-71 274.2 397 50.6
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 1.5e-55 222.2 231 59.7
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 2.5e-55 221.5 145 80.0
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 7.8e-49 199.9 128 79.7
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 1.2e-44 186.0 134 71.6
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.0e-40 171.4 146 65.1
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.7e-33 148.3 147 55.1
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.5e-33 147.9 147 55.1
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 5.0e-32 144.1 121 66.9
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.5e-31 142.5 160 53.1
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 2.5e-15 88.6 71 67.6
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 2.0e-12 79.0 77 55.8
unitig_37.g12849 Utricularia gibba HOM05D005394 ORTHO05D418089 1.2e-09 69.7 90 54.4


User provided reference genes

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