Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g09580 Coffea canephora HOM05D007374 ORTHO05D009283 5.3e-151 537.7 286 100.0
PGSC0003DMG400021285 Solanum tuberosum HOM05D007374 ORTHO05D009283 1.8e-66 256.9 291 53.6
Dinv02438 Davidia involucrata HOM05D007374 ORTHO05D009283 1.2e-65 254.2 268 54.5
Sopen10g003640 Solanum pennellii HOM05D007374 ORTHO05D009283 3.4e-65 252.7 289 52.6
Nitab4.5_0002209g0060 Nicotiana tabacum HOM05D007374 ORTHO05D009283 2.2e-64 250.0 312 51.3
Solyc10g007730.3 Solanum lycopersicum HOM05D007374 ORTHO05D009283 6.5e-64 248.4 289 51.9
TAR627G0951 Trochodendron aralioides HOM05D007374 ORTHO05D009283 1.4e-63 247.3 288 53.1
CAN.G2018.2 Capsicum annuum HOM05D007374 ORTHO05D009283 4.6e-62 242.3 264 52.7
Cfa021554 Carpinus fangiana HOM05D007374 ORTHO05D009283 6.7e-61 238.4 273 50.9
QL08p044444 Quercus lobata HOM05D007374 ORTHO05D009283 3.7e-59 232.6 283 48.4
Eucgr.A01989 Eucalyptus grandis HOM05D007374 ORTHO05D009283 6.3e-59 231.9 271 50.2
Nn4g26487 Nelumbo nucifera HOM05D007374 ORTHO05D009283 1.8e-58 230.3 291 50.2
MD17G1138200 Malus domestica HOM05D007374 ORTHO05D009283 3.8e-56 222.6 278 48.6
Prupe.3G174200 Prunus persica HOM05D007374 ORTHO05D009283 1.1e-55 221.1 270 47.8
COL.COLO4_00303 Corchorus olitorius HOM05D007374 ORTHO05D009283 1.4e-55 220.7 267 50.6
vmacro01388 Vaccinium macrocarpon HOM05D007374 ORTHO05D009283 4.2e-55 219.2 285 46.0
Gohir.A05G379500 Gossypium hirsutum HOM05D007374 ORTHO05D009283 7.2e-55 218.4 287 47.4
Gorai.012G040800 Gossypium raimondii HOM05D007374 ORTHO05D009283 1.2e-54 217.6 285 47.4
CsaV3_7G022640 Cucumis sativus L. HOM05D007374 ORTHO05D009283 2.7e-54 216.5 290 45.2
Gohir.D04G035900 Gossypium hirsutum HOM05D007374 ORTHO05D009283 2.7e-54 216.5 285 47.0
Medtr5g091560 Medicago truncatula HOM05D007374 ORTHO05D009283 4.6e-54 215.7 281 44.8
MELO3C012638.2 Cucumis melo HOM05D007374 ORTHO05D009283 6.1e-54 215.3 290 45.2
Migut.M00488 Erythranthe guttata HOM05D007374 ORTHO05D009283 6.1e-54 215.3 282 50.4
Peaxi162Scf00035g00262 Petunia axillaris HOM05D007374 ORTHO05D009283 1.0e-53 214.5 313 47.6
PGR042G1022 Punica granatum HOM05D007374 ORTHO05D009283 1.8e-53 213.8 269 48.3
Atru.chr6.2078 Acer truncatum HOM05D007374 ORTHO05D009283 3.0e-53 213.0 283 47.3
CiPaw.03G190900 Carya illinoinensis HOM05D007374 ORTHO05D009283 5.1e-53 212.2 277 47.7
FAN14G0493 Fragaria x ananassa HOM05D007374 ORTHO05D009283 8.7e-53 211.5 265 47.5
Ciclev10032166m.g Citrus clementina HOM05D007374 ORTHO05D009283 1.9e-52 210.3 262 51.5
FvH4_6g38360 Fragaria vesca HOM05D007374 ORTHO05D009283 1.9e-52 210.3 265 47.2
TPR.G12560 Trifolium pratense HOM05D007374 ORTHO05D009283 1.9e-52 210.3 259 45.9
ECA234G2656 Erigeron canadensis HOM05D000461 ORTHO05D001840 2.5e-52 209.9 285 48.1
Rhsim12G0085200 Rhododendron simsii HOM05D007374 ORTHO05D009283 4.3e-52 209.1 273 47.3
Oeu005608.1 Olea europaea HOM05D007374 ORTHO05D009283 5.7e-52 208.8 239 51.0
ClCG09G022490 Citrullus lanatus HOM05D007374 ORTHO05D009283 9.7e-52 208.0 290 44.5
LjContig00049g0002262 Lotus japonicus HOM05D007374 ORTHO05D009283 1.6e-51 207.2 291 44.0
Glyma.02G285800 Glycine max HOM05D007374 ORTHO05D009283 2.8e-51 206.5 296 42.9
GSVIVG01020866001 Vitis vinifera HOM05D007374 ORTHO05D009283 1.1e-50 204.5 257 49.0
SGA_v2.0_scaffold70G23631 Striga asiatica HOM05D007374 ORTHO05D009283 2.4e-50 203.4 269 49.1
Glyma.14G028800 Glycine max HOM05D007374 ORTHO05D009283 3.1e-50 203.0 296 42.6
Aqoxy4G00135 Aquilegia oxysepala HOM05D007374 ORTHO05D009283 5.3e-50 202.2 264 47.7
Thecc.01G163300 Theobroma cacao HOM05D007374 ORTHO05D009283 5.3e-50 202.2 288 45.5
VMungo0647G1819 Vigna mungo HOM05D007374 ORTHO05D009283 6.9e-50 201.8 265 45.7
Lsat_1_v5_gn_4_26980 Lactuca sativa HOM05D007374 ORTHO05D009283 2.6e-49 199.9 274 46.4
BcaB02g06801 Brassica carinata HOM05D007374 ORTHO05D009283 5.9e-49 198.7 264 47.7
C05p04770 Brassica napus HOM05D007374 ORTHO05D009283 7.7e-49 198.4 266 47.7
BraA10t42783Z Brassica rapa HOM05D007374 ORTHO05D009283 1.0e-48 198.0 264 48.9
A10p05160 Brassica napus HOM05D007374 ORTHO05D009283 1.3e-48 197.6 264 48.9
RcHm_v2.0_Chr2g0151671 Rosa chinensis HOM05D007374 ORTHO05D009283 1.3e-48 197.6 239 50.2
Sed0010749 Sechium edule HOM05D007374 ORTHO05D009283 1.7e-48 197.2 274 44.5
AL1G16540 Arabidopsis lyrata HOM05D007374 ORTHO05D009283 2.2e-48 196.8 270 46.7
BolC5t29248H Brassica oleracea HOM05D007374 ORTHO05D009283 2.2e-48 196.8 264 47.3
HanXRQChr01g0028771 Helianthus annuus HOM05D007374 ORTHO05D009283 2.2e-48 196.8 268 45.1
Phvul.008G231728 Phaseolus vulgaris HOM05D007374 ORTHO05D009283 5.0e-48 195.7 265 45.3
Sp1g05270 Schrenkiella parvula HOM05D007374 ORTHO05D009283 6.5e-48 195.3 273 45.8
Psat2g016160 Pisum sativum HOM05D007374 ORTHO05D009283 1.1e-47 194.5 259 44.4
Hund08257 Selenicereus undatus HOM05D007374 ORTHO05D009283 5.5e-47 192.2 252 48.0
Thhalv10009532m.g Eutrema salsugineum HOM05D007374 ORTHO05D009283 7.2e-47 191.8 273 46.2
FAN05G2216 Fragaria x ananassa HOM05D007374 ORTHO05D009283 1.2e-46 191.0 310 40.6
Carub.0001s0588 Capsella rubella HOM05D007374 ORTHO05D009283 2.7e-46 189.9 257 45.5
FAN09G2358 Fragaria x ananassa HOM05D007374 ORTHO05D009283 3.6e-46 189.5 310 40.3
Cpa.g.sc1195.1 Carica papaya HOM05D007374 ORTHO05D009283 6.1e-46 188.7 287 42.5
FAN02G3372 Fragaria x ananassa HOM05D007374 ORTHO05D009283 1.0e-45 188.0 310 40.3
Lj1A605T43 Lonicera japonica HOM05D007374 ORTHO05D009283 3.0e-45 186.4 228 48.2
Haze_13514 Corylus avellana HOM05D007374 ORTHO05D009283 8.8e-45 184.9 225 48.4
Sabra05G0154300 Salix brachista HOM05D007374 ORTHO05D009283 1.1e-44 184.5 272 45.2
Lalb_Chr10g0106631 Lupinus albus HOM05D007374 ORTHO05D009283 3.3e-44 183.0 261 43.3
DCAR_009800 Daucus carota HOM05D007374 ORTHO05D009283 2.2e-43 180.3 297 40.7
AT1G06510 Arabidopsis thaliana HOM05D007374 ORTHO05D009283 4.8e-43 179.1 279 40.9
Potri.005G203100 Populus trichocarpa HOM05D007374 ORTHO05D009283 2.4e-42 176.8 267 43.8
Nitab4.5_0003104g0030 Nicotiana tabacum HOM05D007374 ORTHO05D009283 6.9e-42 175.3 235 48.5
MSTRG.15040 Avicennia marina HOM05D007374 ORTHO05D009283 9.1e-42 174.9 267 41.9
arahy.Tifrunner.gnm1.ann1.PL1TQM Arachis hypogaea HOM05D007374 ORTHO05D009283 1.5e-41 174.1 253 42.7
AUR62017602 Chenopodium quinoa HOM05D007374 ORTHO05D009283 2.2e-40 170.2 268 42.5
AUR62015143 Chenopodium quinoa HOM05D007374 ORTHO05D009283 3.8e-40 169.5 280 42.9
HPP92_024591 Vanilla planifolia HOM05D007374 ORTHO05D009283 8.5e-40 168.3 256 43.0
CDE02G0809 Ceratophyllum demersum HOM05D007374 ORTHO05D009283 3.2e-39 166.4 274 38.3
arahy.Tifrunner.gnm1.ann1.G50Y2D Arachis hypogaea HOM05D007374 ORTHO05D009283 4.2e-39 166.0 254 42.1
BcaC04g23554 Brassica carinata HOM05D007374 ORTHO05D009283 7.2e-39 165.2 266 42.5
EL10Ac9g22854 Beta vulgaris HOM05D007374 ORTHO05D009283 7.9e-38 161.8 273 42.5
Ah.01g013460 Amaranthus hybridus HOM05D007374 ORTHO05D009283 1.0e-37 161.4 257 42.8
HPP92_024519 Vanilla planifolia HOM05D007374 ORTHO05D009283 1.4e-37 161.0 256 41.8
Ca_30616_v3 Cicer arietinum L. HOM05D007374 ORTHO05D009283 1.1e-36 157.9 229 40.6
Aa31LG1G7610 Aethionema arabicum HOM05D007374 ORTHO05D009283 4.2e-31 139.4 261 41.0
LjContig00141g0020215 Lotus japonicus HOM05D007374 ORTHO05D009283 6.1e-30 135.6 250 38.4
Ca_06277_v3 Cicer arietinum L. HOM05D007374 ORTHO05D009283 8.8e-29 131.7 211 37.0
unitig_746.g26685 Utricularia gibba HOM05D002434 ORTHO05D002743 8.8e-29 131.7 218 43.1
QL08p044527 Quercus lobata HOM05D007374 ORTHO05D009283 5.7e-28 129.0 101 69.3
CDE09G1208 Ceratophyllum demersum HOM05D007374 ORTHO05D009283 2.2e-27 127.1 251 35.5
MD09G1150800 Malus domestica HOM05D007374 ORTHO05D009283 1.2e-25 121.3 146 52.1
SalBow8G1446 Salvia bowleyana HOM05D007374 ORTHO05D009283 6.5e-24 115.5 119 57.1
Actinidia00867 Actinidia chinensis HOM05D007374 ORTHO05D009283 8.5e-24 115.2 88 73.9
HanXRQChr17g0565851 Helianthus annuus HOM05D007374 ORTHO05D009283 4.0e-21 106.3 142 45.8
Pp3c6_23840 Physcomitrium patens HOM05D007374 ORTHO05D009283 1.5e-20 104.4 142 47.2
Os01g0696000 Oryza sativa ssp. japonica HOM05D007374 ORTHO05D009283 3.4e-20 103.2 254 33.5
Zm00001eb155870 Zea mays HOM05D007374 ORTHO05D009283 4.4e-20 102.8 251 32.7
Sc06g0007570 Simmondsia chinensis HOM05D007374 ORTHO05D009283 2.0e-17 94.0 186 35.5
Hma1.2p1_0081F.1_g042230 Hydrangea macrophylla HOM05D007374 ORTHO05D009283 4.5e-17 92.8 76 68.4
CARHR006130 Cardamine hirsuta HOM05D007374 ORTHO05D009283 5.2e-13 79.3 172 30.8
CBR_g17125 Chara braunii HOM05D007374 ORTHO05D009283 2.0e-12 77.4 112 40.2
Mapoly0086s0079 Marchantia polymorpha HOM05D007374 ORTHO05D009283 2.7e-09 67.0 117 44.4
QL08p044531 Quercus lobata HOM05D007374 ORTHO05D009283 5.9e-09 65.9 83 39.8
HanXRQChr14g0433321 Helianthus annuus HOM05D007374 ORTHO05D009283 9.5e-07 58.5 82 43.9


User provided reference genes

Program Settings