Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 6.3e-202 707.2 353 100.0
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.5e-134 483.4 349 66.2
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 1.4e-132 476.9 349 65.6
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 2.0e-131 473.0 349 64.8
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 9.9e-131 470.7 353 64.3
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.9e-130 468.4 342 65.2
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 7.1e-129 464.5 349 63.0
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 7.1e-129 464.5 309 69.9
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 1.6e-128 463.4 349 63.3
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 6.0e-128 461.5 353 61.8
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 7.8e-128 461.1 360 61.9
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 1.7e-127 459.9 346 61.6
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 3.9e-127 458.8 349 61.9
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 3.3e-126 455.7 342 63.5
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 4.3e-126 455.3 335 65.7
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 1.6e-125 453.4 325 67.1
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 2.8e-125 452.6 340 62.4
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 2.8e-125 452.6 347 62.2
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 6.2e-125 451.4 348 61.2
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.1e-124 450.7 347 62.0
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 4.0e-124 448.7 347 61.7
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 5.2e-124 448.4 347 62.0
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 5.2e-124 448.4 349 61.6
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 6.9e-124 448.0 352 61.4
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 8.9e-124 447.6 349 61.6
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 1.2e-123 447.2 349 62.5
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 2.6e-123 446.0 354 61.3
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 2.6e-123 446.0 347 62.0
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 7.6e-123 444.5 321 64.5
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 4.9e-122 441.8 349 60.7
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 1.9e-121 439.9 349 61.6
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 2.4e-121 439.5 349 60.7
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.4e-121 439.5 350 61.7
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 5.4e-121 438.3 349 61.6
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 9.3e-121 437.6 349 60.2
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.6e-120 436.8 349 60.2
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.7e-120 436.0 350 60.9
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 2.7e-120 436.0 350 60.9
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 3.5e-120 435.6 351 61.5
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 6.0e-120 434.9 325 62.8
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 3.9e-119 432.2 349 61.6
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 3.9e-119 432.2 329 62.3
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 6.6e-119 431.4 349 59.9
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 1.1e-118 430.6 327 60.9
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 1.1e-118 430.6 349 59.3
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 3.3e-118 429.1 320 61.9
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 3.3e-118 429.1 348 60.1
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 5.6e-118 428.3 328 61.6
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 9.6e-118 427.6 330 62.1
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 1.3e-117 427.2 316 64.2
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 1.6e-117 426.8 351 61.0
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 8.1e-117 424.5 348 57.5
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 1.1e-116 424.1 296 66.2
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.4e-116 423.7 328 62.2
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 2.4e-116 422.9 304 64.8
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 2.4e-116 422.9 328 61.9
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 5.3e-116 421.8 310 64.8
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 6.9e-116 421.4 349 57.6
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 9.0e-116 421.0 324 60.5
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 1.2e-115 420.6 294 66.7
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 1.5e-115 420.2 349 58.2
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 4.2e-113 412.1 349 60.2
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 5.4e-113 411.8 294 66.3
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 7.1e-113 411.4 353 60.3
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 9.3e-113 411.0 331 61.0
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 4.6e-112 408.7 341 60.7
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 6.0e-112 408.3 311 61.1
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 6.0e-112 408.3 280 67.9
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 1.0e-111 407.5 352 55.4
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 1.3e-111 407.1 311 61.1
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 4.3e-110 402.1 348 55.7
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 6.2e-109 398.3 345 54.5
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 6.2e-109 398.3 341 58.1
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 1.1e-108 397.5 332 58.1
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 3.1e-108 396.0 356 55.9
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 9.3e-105 384.4 349 55.3
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 1.2e-104 384.0 325 55.7
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 1.2e-104 384.0 352 52.0
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 1.3e-103 380.6 327 55.7
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 1.8e-103 380.2 350 53.7
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 2.4e-100 369.8 294 61.6
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 4.0e-100 369.0 293 59.7
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 6.5e-98 361.7 339 53.4
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 1.4e-97 360.5 349 52.1
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 2.5e-97 359.8 347 52.4
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 3.2e-97 359.4 351 51.6
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 8.7e-95 351.3 283 59.0
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 1.5e-94 350.5 349 52.1
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 5.7e-94 348.6 350 50.0
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 9.6e-94 347.8 327 51.7
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 1.3e-93 347.4 285 55.8
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 2.8e-93 346.3 327 51.4
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 9.0e-92 341.3 348 50.3
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 2.0e-91 340.1 328 50.6
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 2.0e-91 340.1 328 50.6
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 4.5e-91 339.0 354 49.7
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 5.9e-91 338.6 326 54.6
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 7.6e-91 338.2 348 48.6
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 2.2e-90 336.7 334 50.9
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 1.1e-89 334.3 250 61.6
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 4.2e-89 332.4 349 47.0
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 4.6e-88 328.9 336 47.9
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 6.1e-88 328.6 316 49.4
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.4e-84 316.6 220 66.8
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.6e-78 296.6 277 55.2
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 6.5e-74 282.0 286 46.5
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.2e-72 277.7 285 46.7
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.0e-71 274.6 325 44.3
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 1.1e-70 271.2 294 45.9
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.2e-69 266.9 296 45.9
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 6.3e-69 265.4 337 42.7
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 4.0e-63 246.1 335 40.9
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 6.3e-61 238.8 190 55.8
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 3.1e-60 236.5 320 41.2
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 7.0e-52 208.8 154 62.3
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-49 201.1 291 38.1
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.1e-48 197.2 310 36.8
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.6e-48 196.4 288 36.1
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-47 194.9 315 36.5
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.8e-47 192.2 288 35.8
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 4.9e-45 186.0 285 35.4
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 8.3e-45 185.3 283 35.3
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.1e-44 183.3 346 31.8
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.6e-43 181.0 333 33.9
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-42 178.3 293 37.9
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.9e-41 174.1 250 39.2
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.6e-41 172.6 306 35.6
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.4e-39 167.9 293 34.1
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.8e-39 165.6 306 33.3
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-38 164.5 237 37.1
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.4e-38 163.3 312 32.7
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.7e-35 153.7 318 31.4
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.8e-35 152.1 293 33.4
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.9e-34 149.8 290 32.8
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.2e-32 144.8 304 32.9
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.4e-30 136.7 290 30.0
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.6e-26 122.1 273 30.8
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 3.1e-23 113.6 280 29.3
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-15 88.6 66 59.1
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 1.5e-14 84.7 70 58.6
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.7e-13 81.3 96 43.8
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 3.5e-11 73.6 156 31.4
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 7.8e-11 72.4 74 44.6
AagrBONN_evm.TU.Sc2ySwM_117.3082 Anthoceros agrestis HOM05D005299 ORTHO05D072579 5.8e-06 56.2 128 25.8


User provided reference genes

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