Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 3.0e-179 631.7 315 100.0
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 5.2e-131 471.5 334 73.4
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 3.3e-130 468.8 334 73.1
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 1.4e-128 463.4 323 74.0
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.6e-127 459.9 320 74.4
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 2.7e-127 459.1 320 74.4
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.0e-126 457.2 318 76.1
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 8.5e-126 454.1 333 72.4
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 3.2e-125 452.2 314 72.6
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.5e-125 451.4 316 73.7
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.6e-124 449.9 312 75.6
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 4.7e-124 448.4 324 71.9
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.0e-123 445.7 326 69.6
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 3.4e-122 442.2 294 75.2
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 7.5e-122 441.0 309 72.5
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 9.8e-122 440.7 312 73.1
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 9.8e-122 440.7 256 84.8
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 9.8e-122 440.7 315 71.4
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.3e-121 440.3 309 75.1
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.7e-121 439.9 301 73.4
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.7e-121 439.9 306 73.5
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.2e-121 439.5 306 73.2
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.8e-121 439.1 312 72.4
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 6.3e-121 438.0 309 73.8
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 1.4e-120 436.8 315 73.0
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 2.4e-120 436.0 278 78.1
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 5.4e-120 434.9 319 71.2
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 7.0e-120 434.5 313 74.8
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 7.0e-120 434.5 310 73.5
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.2e-119 433.7 317 71.6
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.6e-119 433.3 313 72.8
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.6e-119 433.3 317 72.9
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.6e-119 433.3 310 71.9
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.0e-119 433.0 259 81.1
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.7e-119 432.6 306 72.5
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 2.7e-119 432.6 319 71.2
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 3.5e-119 432.2 289 76.1
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 4.5e-119 431.8 245 85.7
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 4.5e-119 431.8 257 80.5
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 5.9e-119 431.4 326 68.1
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 5.9e-119 431.4 312 73.1
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 7.7e-119 431.0 248 83.9
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 7.7e-119 431.0 307 73.3
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 1.0e-118 430.6 317 69.4
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.7e-118 429.9 310 72.6
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.7e-118 429.9 305 71.8
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 2.9e-118 429.1 347 66.6
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 8.6e-118 427.6 321 70.1
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 8.6e-118 427.6 245 84.1
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.1e-117 427.2 308 71.4
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.5e-117 424.1 312 71.5
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.5e-117 424.1 285 75.1
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 9.5e-117 424.1 285 75.1
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.6e-116 423.3 316 67.4
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 3.6e-116 422.2 276 76.4
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 4.7e-116 421.8 298 71.5
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 4.7e-116 421.8 260 77.7
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 6.1e-116 421.4 315 70.8
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.4e-115 420.2 287 73.2
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.8e-115 419.9 319 69.6
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 2.3e-115 419.5 322 67.1
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 3.0e-115 419.1 286 73.1
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 4.0e-115 418.7 297 71.7
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 6.8e-115 417.9 314 66.2
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 8.8e-115 417.5 286 72.7
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 2.0e-114 416.4 286 72.4
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 2.6e-114 416.0 257 75.9
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.6e-114 416.0 310 67.7
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.7e-114 414.8 293 72.4
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.3e-113 413.7 298 70.5
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 1.3e-113 413.7 322 65.8
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.7e-113 412.1 246 77.2
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 3.7e-113 412.1 275 74.9
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 8.3e-113 411.0 243 80.7
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 8.3e-113 411.0 244 79.5
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.4e-112 410.2 299 70.9
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 2.4e-112 409.5 313 66.1
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 4.1e-112 408.7 284 71.1
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 9.2e-112 407.5 304 69.1
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.6e-111 406.8 316 67.4
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.0e-111 406.4 245 78.8
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.0e-111 406.4 340 63.2
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 2.7e-111 406.0 341 63.0
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 4.5e-111 405.2 278 72.3
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.0e-110 404.1 249 77.1
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.9e-109 399.8 246 77.2
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.2e-108 397.1 244 77.0
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 2.8e-108 396.0 246 76.8
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 3.6e-108 395.6 280 70.7
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.0e-107 394.0 323 63.2
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 6.8e-107 391.3 260 75.8
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 1.7e-105 386.7 341 60.4
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.2e-105 386.3 338 62.4
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.7e-105 385.6 298 68.1
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.7e-102 376.7 461 51.8
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 8.6e-102 374.4 212 84.4
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 8.0e-100 367.9 319 62.7
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 1.1e-99 367.5 254 72.4
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 3.1e-99 365.9 296 63.9
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.5e-98 363.6 300 62.7
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 7.5e-98 361.3 352 56.8
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.9e-96 356.7 216 82.4
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 6.0e-95 351.7 249 71.1
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.9e-93 346.7 215 74.0
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.9e-93 346.7 291 66.0
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 8.1e-92 341.3 254 69.3
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.7e-89 333.6 256 60.5
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 2.9e-89 332.8 282 63.5
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.4e-88 330.5 272 58.5
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 9.5e-85 317.8 270 61.5
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.9e-80 303.5 231 66.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 9.0e-75 284.6 167 84.4
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 4.9e-73 278.9 216 61.6
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 6.0e-71 271.9 242 54.1
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.8e-67 260.4 179 72.6
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 4.0e-67 259.2 159 78.6
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 4.5e-66 255.8 167 74.3
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 7.6e-66 255.0 224 60.7
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 9.9e-66 254.6 254 48.4
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 8.4e-65 251.5 251 53.4
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 2.4e-64 250.0 145 84.1
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 9.3e-64 248.1 319 49.2
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 4.8e-60 235.7 206 62.6
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 2.0e-58 230.3 192 64.1
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.5e-58 229.2 137 81.0
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.9e-57 226.5 137 81.0
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 3.2e-56 223.0 238 43.3
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 5.6e-53 212.2 130 80.8
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 9.6e-53 211.5 203 59.1
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.8e-51 207.2 133 74.4
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 6.5e-49 198.7 181 56.4
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.9e-48 197.2 238 43.7
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.2e-48 196.1 179 59.2
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 7.1e-48 195.3 169 62.1
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 9.3e-48 194.9 112 82.1
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 2.5e-45 186.8 110 81.8
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 6.3e-44 182.2 114 72.8
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.1e-43 181.4 136 68.4
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.1e-43 181.4 136 68.4
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.7e-41 174.1 239 38.9
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.1e-39 167.2 92 85.9
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 3.6e-39 166.4 164 56.7
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.4e-38 164.5 160 57.5
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 1.1e-35 154.8 132 57.6
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.8e-35 154.1 237 39.2
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 9.1e-35 151.8 223 39.0
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.2e-34 151.4 80 88.8
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.4e-34 149.8 82 79.3
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 7.2e-32 142.1 76 86.8
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 5.1e-30 136.0 75 80.0
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 2.8e-28 130.2 67 88.1
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 6.3e-28 129.0 117 63.2
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 9.1e-27 125.2 142 54.2
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.3e-25 121.3 246 33.7
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.5e-24 117.1 63 85.7
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.1e-23 114.0 56 87.5
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 3.0e-22 110.2 82 64.6
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 5.9e-18 95.9 59 74.6
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 8.5e-17 92.0 61 70.5
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 7.2e-16 89.0 48 79.2
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.6e-15 86.7 146 36.3
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.0e-14 83.6 59 57.6
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 5.0e-09 66.2 102 35.3
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 2.5e-08 63.9 45 68.9
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 7.2e-08 62.4 75 46.7


User provided reference genes

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