Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 3.1e-193 678.3 351 100.0
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.4e-121 439.5 262 87.8
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.4e-121 439.5 262 87.8
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 2.4e-121 439.5 262 87.8
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 3.2e-121 439.1 262 87.4
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 9.2e-121 437.6 263 86.3
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.1e-120 436.4 262 87.0
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 2.7e-120 436.0 262 87.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 4.6e-120 435.3 263 86.7
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.3e-119 433.7 262 86.6
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.3e-119 433.0 262 86.6
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.3e-119 433.0 262 86.6
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 2.3e-119 433.0 262 86.6
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 3.0e-119 432.6 262 86.3
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.0e-119 432.6 262 85.9
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 8.6e-119 431.0 262 85.5
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 8.6e-119 431.0 262 85.5
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.1e-118 430.6 262 85.1
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.5e-118 430.3 268 82.8
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.9e-118 429.9 262 85.9
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 2.5e-118 429.5 262 86.3
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 3.3e-118 429.1 312 74.7
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 4.3e-118 428.7 262 84.7
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 4.3e-118 428.7 262 84.7
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 5.6e-118 428.3 262 83.6
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.3e-118 427.9 262 84.7
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 9.5e-118 427.6 262 84.4
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.2e-117 427.2 263 83.7
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.2e-117 427.2 262 84.4
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.6e-117 426.8 262 84.4
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 1.6e-117 426.8 262 83.6
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.6e-117 426.8 265 83.4
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.6e-117 426.8 262 84.7
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 2.1e-117 426.4 262 84.4
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.8e-117 426.0 263 83.7
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 2.8e-117 426.0 262 84.7
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 3.6e-117 425.6 262 83.2
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 3.6e-117 425.6 262 83.6
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.6e-117 425.6 262 83.2
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 3.6e-117 425.6 262 84.4
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 4.7e-117 425.2 262 83.6
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.1e-117 424.5 262 83.2
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 8.1e-117 424.5 262 83.6
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 8.1e-117 424.5 262 84.7
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 8.1e-117 424.5 262 84.7
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.1e-116 424.1 261 83.9
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.8e-116 423.3 262 85.1
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 2.3e-116 422.9 262 84.7
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 2.3e-116 422.9 269 83.3
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 3.1e-116 422.5 263 82.9
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 4.0e-116 422.2 262 84.4
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 5.2e-116 421.8 264 83.0
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 6.8e-116 421.4 264 84.5
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.9e-116 421.0 262 82.4
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.2e-115 420.6 262 83.6
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.5e-115 420.2 262 82.8
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 2.0e-115 419.9 262 83.2
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 2.0e-115 419.9 262 83.6
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 2.0e-115 419.9 262 84.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.6e-115 419.5 262 83.6
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.4e-115 419.1 262 83.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.4e-115 419.1 262 82.8
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 4.4e-115 418.7 262 83.6
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 4.4e-115 418.7 262 83.6
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 5.8e-115 418.3 262 83.2
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 5.8e-115 418.3 262 82.8
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 7.6e-115 417.9 262 82.4
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 1.3e-114 417.2 262 83.2
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 2.2e-114 416.4 262 83.6
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 2.2e-114 416.4 263 83.3
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 2.2e-114 416.4 262 83.2
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 2.9e-114 416.0 262 82.1
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.7e-114 415.6 262 83.6
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 6.4e-114 414.8 263 83.3
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 3.2e-113 412.5 262 83.6
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 5.4e-113 411.8 262 82.4
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 7.1e-113 411.4 262 82.4
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 9.2e-113 411.0 262 79.8
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 9.2e-113 411.0 262 81.7
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 9.2e-113 411.0 262 81.7
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 1.2e-112 410.6 264 82.2
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.7e-112 409.5 249 85.1
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 4.6e-112 408.7 262 82.4
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 1.3e-111 407.1 259 82.2
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 1.7e-111 406.8 263 81.0
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.7e-111 406.8 264 81.1
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 1.1e-110 404.1 262 79.4
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 2.5e-110 402.9 263 79.8
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 3.3e-110 402.5 264 81.1
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 5.6e-110 401.7 262 82.1
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 5.6e-110 401.7 262 80.2
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.8e-108 396.7 262 79.0
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 4.0e-108 395.6 255 83.5
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 8.9e-108 394.4 263 81.4
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 1.2e-107 394.0 247 83.8
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 1.5e-107 393.7 263 81.4
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.5e-107 393.7 262 77.9
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 2.6e-107 392.9 263 79.8
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 3.4e-107 392.5 262 79.0
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 4.4e-107 392.1 247 83.4
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.7e-106 390.2 270 76.7
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 2.2e-106 389.8 239 84.5
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 4.9e-106 388.7 262 77.1
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 4.9e-106 388.7 262 77.1
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 8.4e-106 387.9 262 77.9
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.4e-105 387.1 262 77.1
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.9e-105 386.7 270 75.6
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 2.4e-105 386.3 262 76.7
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 2.4e-105 386.3 262 76.7
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 2.4e-105 386.3 262 76.7
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 2.4e-105 386.3 262 76.7
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 2.4e-105 386.3 262 76.7
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 2.4e-105 386.3 262 76.7
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 2.4e-105 386.3 262 76.3
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 3.2e-105 386.0 262 76.7
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 3.2e-105 386.0 262 76.7
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 3.2e-105 386.0 262 76.7
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 4.2e-105 385.6 262 76.7
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 4.2e-105 385.6 263 80.2
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 7.1e-105 384.8 263 80.2
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 9.3e-105 384.4 262 76.3
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.2e-104 384.0 263 76.8
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.2e-104 384.0 263 76.8
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.2e-104 384.0 263 76.8
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 2.1e-104 383.3 263 79.1
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 7.8e-104 381.3 262 76.0
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.0e-103 380.9 262 75.6
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 6.6e-103 378.3 262 75.2
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 7.3e-102 374.8 264 78.4
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 8.1e-101 371.3 272 73.9
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.4e-100 369.8 263 76.8
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 7.6e-99 364.8 248 78.6
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 9.9e-99 364.4 228 83.8
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 5.4e-97 358.6 262 74.0
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 6.6e-95 351.7 210 86.7
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.3e-94 349.0 249 71.9
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.6e-93 347.1 229 76.9
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 6.2e-93 345.1 239 79.1
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.4e-92 344.0 226 77.9
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.0e-92 342.4 233 76.0
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 5.3e-92 342.0 257 74.3
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 9.0e-92 341.3 275 68.4
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.9e-90 335.5 263 67.3
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.4e-89 334.0 219 76.3
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 8.7e-87 324.7 265 66.4
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 7.6e-83 311.6 267 62.9
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.0e-79 299.7 245 62.4
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 6.7e-79 298.5 234 67.9
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 6.2e-77 292.0 250 66.0
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 2.6e-75 286.6 253 63.2
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.9e-74 283.1 247 64.0
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 3.8e-74 282.7 208 68.8
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.2e-72 277.7 204 73.5
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 4.3e-70 269.2 270 57.4
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 2.8e-69 266.5 263 58.9
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 2.6e-67 260.0 211 64.5
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.5e-67 259.2 262 60.3
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.0e-58 231.5 235 59.1
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.8e-55 220.7 130 86.2
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.2e-53 213.8 244 48.8
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 2.0e-51 207.2 249 49.8
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.6e-51 206.8 120 88.3
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 2.5e-49 200.3 138 77.5
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.4e-47 194.5 179 60.9
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.3e-42 177.9 118 78.0
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.1e-36 156.4 127 69.3
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.2e-33 146.7 191 47.6
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.6e-30 137.1 96 70.8
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.2e-22 111.7 69 82.6


User provided reference genes

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