Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 1.8e-39 167.9 84 100.0
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 7.5e-22 109.4 84 63.1
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 3.7e-21 107.1 80 62.5
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 4.9e-21 106.7 84 59.5
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 1.4e-20 105.1 84 60.7
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 1.4e-20 105.1 84 60.7
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 1.8e-20 104.8 84 59.5
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 3.1e-20 104.0 84 58.3
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 1.6e-19 101.7 81 63.0
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 2.0e-19 101.3 80 57.5
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 2.7e-19 100.9 83 55.4
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 4.5e-19 100.1 82 56.1
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 5.9e-19 99.8 81 56.8
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 5.9e-19 99.8 81 56.8
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.0e-18 99.0 84 58.3
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 1.3e-18 98.6 82 58.5
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 2.3e-18 97.8 81 56.8
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 5.0e-18 96.7 81 50.6
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 5.0e-18 96.7 80 60.0
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 6.6e-18 96.3 82 54.9
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 6.6e-18 96.3 82 54.9
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 1.5e-17 95.1 82 52.4
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.5e-17 95.1 83 50.6
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 2.5e-17 94.4 82 52.4
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.5e-17 94.4 82 51.2
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.5e-17 94.4 83 50.6
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.5e-17 94.4 82 51.2
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 2.5e-17 94.4 83 55.4
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 3.3e-17 94.0 83 49.4
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 4.3e-17 93.6 81 51.9
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 5.6e-17 93.2 82 50.0
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 5.6e-17 93.2 81 51.9
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 1.2e-16 92.0 83 49.4
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 1.6e-16 91.7 79 51.9
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 2.1e-16 91.3 79 53.2
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 3.6e-16 90.5 75 56.0
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 3.6e-16 90.5 81 49.4
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 3.6e-16 90.5 84 52.4
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.7e-16 90.1 80 48.8
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 4.7e-16 90.1 81 51.9
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 1.8e-15 88.2 76 55.3
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 3.0e-15 87.4 81 49.4
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 3.0e-15 87.4 77 50.6
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 4.0e-15 87.0 82 47.6
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 8.9e-15 85.9 80 46.2
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 2.0e-14 84.7 80 50.0
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 3.4e-14 84.0 83 45.8
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.4e-14 84.0 80 52.5
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 3.4e-14 84.0 78 51.3
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 3.4e-14 84.0 78 51.3
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 4.4e-14 83.6 80 51.2
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 4.4e-14 83.6 81 45.7
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 5.8e-14 83.2 80 47.5
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 5.8e-14 83.2 82 47.6
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 7.5e-14 82.8 80 43.8
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 9.8e-14 82.4 73 52.1
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 1.3e-13 82.0 74 51.4
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 1.7e-13 81.6 80 42.5
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 2.2e-13 81.3 79 46.8
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 2.2e-13 81.3 79 44.3
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 2.2e-13 81.3 80 46.2
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 3.7e-13 80.5 82 46.3
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 3.7e-13 80.5 78 44.9
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 4.9e-13 80.1 82 46.3
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 4.9e-13 80.1 75 48.0
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 4.9e-13 80.1 81 43.2
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 4.9e-13 80.1 81 44.4
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 8.3e-13 79.3 80 43.8
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 8.3e-13 79.3 79 43.0
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 1.1e-12 79.0 80 47.5
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.4e-12 77.8 76 51.3
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 2.4e-12 77.8 83 44.6
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 2.4e-12 77.8 80 46.2
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 3.2e-12 77.4 80 46.2
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 4.1e-12 77.0 79 44.3
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 5.4e-12 76.6 80 45.0
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 7.0e-12 76.3 72 47.2
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 9.2e-12 75.9 76 47.4
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 9.2e-12 75.9 78 44.9
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 1.2e-11 75.5 80 43.8
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.6e-11 75.1 77 40.3
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 1.6e-11 75.1 81 40.7
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 1.6e-11 75.1 81 45.7
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 2.7e-11 74.3 77 45.5
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 2.7e-11 74.3 79 43.0
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 2.7e-11 74.3 74 47.3
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 4.6e-11 73.6 79 41.8
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 4.6e-11 73.6 79 43.0
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 6.0e-11 73.2 76 46.1
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.3e-10 72.0 77 46.8
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 1.7e-10 71.6 78 41.0
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 3.9e-10 70.5 77 44.2
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 3.9e-10 70.5 77 46.8
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 3.9e-10 70.5 71 47.9
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 5.0e-10 70.1 82 36.6
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 6.6e-10 69.7 77 45.5
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 6.6e-10 69.7 77 42.9
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 6.6e-10 69.7 77 45.5
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 6.6e-10 69.7 81 42.0
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 8.6e-10 69.3 77 42.9
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 1.5e-09 68.6 77 44.2
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.5e-09 68.6 73 43.8
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.9e-09 68.2 48 66.7
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 1.9e-09 68.2 77 40.3
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 1.9e-09 68.2 74 41.9
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 1.9e-09 68.2 77 40.3
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.5e-09 67.8 48 66.7
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 2.5e-09 67.8 77 41.6
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 2.5e-09 67.8 77 41.6
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 3.3e-09 67.4 70 44.3
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 4.3e-09 67.0 48 64.6
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 5.6e-09 66.6 45 68.9
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 5.6e-09 66.6 82 41.5
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 7.3e-09 66.2 78 41.0
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 9.5e-09 65.9 49 63.3
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.6e-08 65.1 48 62.5
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 2.1e-08 64.7 48 62.5
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 6.2e-08 63.2 48 62.5
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 6.2e-08 63.2 40 62.5
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 4.0e-07 60.5 45 62.2
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 5.2e-07 60.1 80 40.0
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 5.8e-06 56.6 46 52.2


User provided reference genes

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