Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 0.0e+00 1437.9 710 100.0
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 0.0e+00 1385.5 710 96.6
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 5.9e-300 1033.9 718 71.3
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.7e-299 1032.3 718 72.0
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 2.1e-297 1025.4 716 70.8
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 4.7e-297 1024.2 716 70.5
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 1.5e-295 1019.2 716 71.2
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 1.8e-293 1012.3 718 70.1
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.5e-287 992.6 717 69.0
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 4.4e-287 991.1 716 69.1
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 9.1e-285 983.4 718 70.1
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 7.7e-284 980.3 712 69.4
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 8.0e-281 970.3 717 67.9
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 3.4e-279 964.9 712 67.7
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 7.5e-279 963.8 714 67.6
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 2.8e-278 961.8 717 67.5
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 3.2e-274 948.3 725 67.0
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 3.6e-273 944.9 716 66.3
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 4.7e-273 944.5 713 67.9
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 1.8e-269 932.6 716 66.5
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 5.6e-266 921.0 718 65.7
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 1.2e-265 919.8 709 66.3
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 1.5e-263 912.9 711 65.0
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 4.9e-262 907.9 710 64.8
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 1.4e-261 906.4 728 63.9
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 1.8e-261 906.0 726 65.3
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 6.2e-257 891.0 731 62.2
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 1.8e-256 889.4 715 64.2
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 2.3e-256 889.0 711 63.0
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 1.4e-253 879.8 714 65.3
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 4.6e-252 874.8 723 63.5
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 1.9e-250 869.4 710 62.7
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 5.6e-250 867.8 715 62.2
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 9.5e-250 867.1 714 62.3
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 2.1e-249 865.9 718 61.7
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 2.3e-248 862.4 722 60.2
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 4.0e-248 861.7 718 60.4
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 5.2e-248 861.3 718 61.4
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 4.9e-246 854.7 713 62.1
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 4.9e-246 854.7 729 60.9
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 7.1e-245 850.9 723 59.8
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 1.6e-244 849.7 717 61.2
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 7.8e-244 847.4 723 60.2
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 1.0e-243 847.0 710 61.1
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.3e-243 846.7 729 59.9
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.7e-243 846.3 729 59.9
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 6.6e-243 844.3 725 59.6
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 8.6e-243 844.0 730 59.7
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 9.5e-242 840.5 712 61.7
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 9.5e-242 840.5 721 60.2
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.6e-241 839.7 730 59.5
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 8.1e-241 837.4 726 60.6
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 1.1e-240 837.0 727 60.9
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 2.3e-240 835.9 710 61.1
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 2.3e-240 835.9 714 59.4
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 4.0e-240 835.1 715 60.0
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 1.5e-239 833.2 719 60.1
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 3.4e-239 832.0 564 72.3
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 1.4e-237 826.6 712 60.3
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 2.4e-237 825.9 711 59.8
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 4.1e-237 825.1 723 58.6
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 7.1e-237 824.3 725 59.6
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 1.6e-236 823.2 706 59.2
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 1.6e-236 823.2 708 59.3
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 6.0e-236 821.2 715 59.7
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 1.7e-235 819.7 709 59.5
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 3.0e-235 818.9 713 59.7
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 5.1e-235 818.1 713 57.8
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 6.6e-235 817.8 718 59.7
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 1.9e-234 816.2 718 57.7
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 3.6e-233 812.0 721 56.6
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 3.6e-233 812.0 715 58.7
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 8.1e-233 810.8 745 56.4
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 6.9e-232 807.7 717 57.3
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 1.5e-231 806.6 712 57.6
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 4.4e-231 805.1 720 58.3
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 5.8e-231 804.7 723 56.4
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 1.7e-230 803.1 713 57.5
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 2.9e-230 802.4 716 56.4
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 3.8e-230 802.0 713 58.9
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 8.4e-230 800.8 720 57.4
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 8.4e-230 800.8 713 57.2
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 1.1e-229 800.4 711 58.6
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 1.4e-229 800.0 745 55.8
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 4.2e-229 798.5 717 56.9
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 4.2e-229 798.5 717 56.9
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 4.2e-229 798.5 717 56.9
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 4.2e-229 798.5 715 59.3
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 7.1e-229 797.7 721 58.4
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 1.2e-228 797.0 708 57.3
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 1.6e-228 796.6 716 58.2
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 7.8e-228 794.3 701 57.6
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 3.0e-227 792.3 716 57.8
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 3.9e-227 792.0 715 57.9
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 6.6e-227 791.2 715 57.1
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 8.7e-227 790.8 718 57.2
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 3.1e-224 782.3 712 56.5
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 9.9e-223 777.3 710 58.0
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 2.2e-222 776.2 734 56.7
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 1.4e-221 773.5 717 58.2
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 2.1e-220 769.6 707 55.9
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 5.6e-218 761.5 707 56.4
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 9.6e-218 760.8 721 56.0
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 3.1e-216 755.7 720 56.8
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.5e-215 753.4 712 55.3
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 7.6e-215 751.1 721 53.8
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 2.4e-213 746.1 713 55.0
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.2e-213 745.7 711 54.9
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 2.1e-212 743.0 714 54.8
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 3.0e-211 739.2 707 56.9
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 6.2e-209 731.5 719 55.1
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 6.5e-206 721.5 714 54.8
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 2.3e-203 713.0 712 53.8
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 3.8e-198 695.7 709 52.9
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.6e-196 690.3 712 52.8
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.1e-196 689.9 711 51.6
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 2.7e-196 689.5 699 53.5
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 7.9e-196 688.0 711 51.6
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 5.7e-194 681.8 576 59.9
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 4.2e-189 665.6 686 52.0
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 3.6e-188 662.5 693 52.5
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 2.8e-185 652.9 713 49.4
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 1.3e-182 644.0 841 43.5
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 2.7e-180 636.3 719 50.5
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 7.9e-180 634.8 712 47.1
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 8.5e-174 614.8 735 46.9
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 3.2e-173 612.8 735 47.2
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 9.7e-170 601.3 743 45.9
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 1.0e-166 591.3 495 60.8
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 2.2e-166 590.1 692 47.3
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 1.8e-155 553.9 560 52.3
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 8.9e-155 551.6 769 41.6
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 6.8e-147 525.4 522 53.1
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 6.4e-145 518.8 726 41.7
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 4.6e-143 512.7 812 38.8
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 4.9e-121 439.5 360 61.4
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 1.6e-119 434.5 357 62.5
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 8.4e-113 412.1 430 53.0
SHI10509 Sapria himalayana HOM05D003819 ORTHO05D005291 5.4e-104 382.9 376 52.9
unitig_85.g27373 Utricularia gibba HOM05D003819 ORTHO05D005291 7.1e-104 382.5 323 58.5
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 9.3e-104 382.1 918 31.0
RcHm_v2.0_Chr2g0128401 Rosa chinensis HOM05D003819 ORTHO05D005291 1.5e-101 374.8 340 56.8
Oeu053232.1 Olea europaea HOM05D003819 ORTHO05D005291 4.0e-91 340.1 417 48.4
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 2.6e-90 337.4 231 70.6
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 2.5e-77 294.3 437 41.6
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 4.2e-72 276.9 412 41.0
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 3.0e-54 217.6 177 62.7
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 9.8e-45 186.0 191 52.9
Cc02_g34240 Coffea canephora HOM05D003819 ORTHO05D023588 1.7e-44 185.3 85 96.5
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 4.8e-44 183.7 146 58.9
Dinv24544 Davidia involucrata HOM05D003819 ORTHO05D005291 8.9e-38 162.9 141 58.9
AUR62037398 Chenopodium quinoa HOM05D003819 ORTHO05D005291 1.1e-35 156.0 100 74.0
Cc00_g06350 Coffea canephora HOM05D003819 ORTHO05D023588 1.3e-28 132.5 171 46.8
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 6.4e-28 130.2 160 48.1
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 2.3e-25 121.7 93 57.0
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 3.0e-25 121.3 100 53.0
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 3.0e-25 121.3 100 53.0
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.2e-23 115.9 100 60.0
Lalb_Chr14g0367511 Lupinus albus HOM05D003819 ORTHO05D005291 3.6e-23 114.4 78 66.7
FvH4_4g05521 Fragaria vesca HOM05D003819 ORTHO05D005291 1.1e-22 112.8 211 36.0
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 9.8e-21 106.3 156 37.2
Nn1g05873 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.3e-20 105.9 81 66.7
FvH4_2g05661 Fragaria vesca HOM05D003819 ORTHO05D025473 6.4e-20 103.6 113 51.3
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 4.6e-18 97.4 96 53.1
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 4.6e-18 97.4 96 53.1
Mapoly0086s0086 Marchantia polymorpha HOM05D003819 ORTHO05D038376 4.6e-18 97.4 455 24.2
FvH4_2g12921 Fragaria vesca HOM05D003819 ORTHO05D025473 7.8e-18 96.7 94 54.3
Haze_22749 Corylus avellana HOM05D003819 ORTHO05D005291 6.6e-17 93.6 93 51.6
AagrBONN_evm.TU.Sc2ySwM_228.4816 Anthoceros agrestis HOM05D003819 ORTHO05D038376 1.8e-14 85.5 375 26.7
Psat7g136520 Pisum sativum HOM05D003819 ORTHO05D005291 1.3e-12 79.3 80 53.8
Nn1g05663 Nelumbo nucifera HOM05D003819 ORTHO05D019686 2.9e-12 78.2 54 63.0
C04p03970 Brassica napus HOM05D003819 ORTHO05D032918 4.9e-12 77.4 59 62.7
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 6.4e-12 77.0 54 61.1
BcaC02g12428 Brassica carinata HOM05D003819 ORTHO05D032918 8.3e-12 76.6 68 55.9
Nn5g28220 Nelumbo nucifera HOM05D003819 ORTHO05D019686 3.2e-11 74.7 51 62.7
Psat1g205040 Pisum sativum HOM05D003819 ORTHO05D005291 4.1e-11 74.3 211 30.3
BolC4t22033H Brassica oleracea HOM05D003819 ORTHO05D032918 6.0e-10 70.5 59 57.6
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 7.8e-10 70.1 48 70.8
COL.COLO4_26644 Corchorus olitorius HOM05D001219 ORTHO05D001017 5.6e-08 63.9 278 25.2
SMO115G0078 Selaginella moellendorffii HOM05D001905 ORTHO05D001820 7.3e-08 63.5 432 25.7
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 8.1e-07 60.1 431 22.5
ClCG06G005660 Citrullus lanatus HOM05D002762 ORTHO05D004643 1.4e-06 59.3 115 35.7
Thecc.06G037400 Theobroma cacao HOM05D001219 ORTHO05D001017 1.8e-06 58.9 256 26.2
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 3.1e-06 58.2 264 25.4
Nn4g26135 Nelumbo nucifera HOM05D002762 ORTHO05D004643 5.2e-06 57.4 142 32.4
THA.LOC104802549 Tarenaya hassleriana HOM05D002762 ORTHO05D004643 5.2e-06 57.4 131 35.1


User provided reference genes

Program Settings