Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 4.4e-83 311.2 155 100.0
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 1.9e-41 172.9 100 83.0
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 2.4e-41 172.6 100 82.0
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 5.4e-41 171.4 100 84.0
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 2.1e-40 169.5 100 82.0
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 1.0e-39 167.2 96 82.3
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 1.0e-39 167.2 96 82.3
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 1.0e-39 167.2 96 82.3
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 1.0e-39 167.2 96 82.3
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 5.1e-39 164.9 96 80.2
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 6.6e-39 164.5 100 79.0
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 8.7e-39 164.1 96 80.2
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 8.7e-39 164.1 100 79.0
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 1.5e-38 163.3 92 83.7
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 1.5e-38 163.3 100 80.0
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 1.9e-38 162.9 100 78.0
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 2.5e-38 162.5 100 79.0
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 3.3e-38 162.2 100 79.0
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 4.3e-38 161.8 99 76.8
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 4.3e-38 161.8 100 80.0
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 5.6e-38 161.4 99 74.7
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 5.6e-38 161.4 99 74.7
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 5.6e-38 161.4 98 78.6
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 5.6e-38 161.4 98 78.6
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 7.3e-38 161.0 96 80.2
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 7.3e-38 161.0 98 76.5
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 7.3e-38 161.0 98 76.5
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 9.6e-38 160.6 100 78.0
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 9.6e-38 160.6 100 78.0
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 1.3e-37 160.2 98 78.6
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 1.3e-37 160.2 90 84.4
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 1.3e-37 160.2 100 80.0
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 1.6e-37 159.8 98 77.6
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 2.1e-37 159.5 99 74.7
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 3.6e-37 158.7 100 77.0
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 4.8e-37 158.3 99 73.7
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 4.8e-37 158.3 100 77.0
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 1.1e-36 157.1 90 82.2
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.1e-36 157.1 90 82.2
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.4e-36 156.8 100 76.0
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 1.4e-36 156.8 90 82.2
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 1.8e-36 156.4 100 73.0
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 1.8e-36 156.4 98 76.5
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 1.8e-36 156.4 93 79.6
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 2.4e-36 156.0 95 78.9
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 3.1e-36 155.6 98 75.5
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.1e-36 155.6 98 75.5
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 4.0e-36 155.2 97 78.4
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 4.0e-36 155.2 97 78.4
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 4.0e-36 155.2 98 75.5
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 4.0e-36 155.2 96 78.1
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 4.0e-36 155.2 101 78.2
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 6.9e-36 154.5 90 80.0
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 6.9e-36 154.5 101 77.2
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 9.0e-36 154.1 101 77.2
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 9.0e-36 154.1 101 77.2
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 1.2e-35 153.7 100 73.0
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 1.2e-35 153.7 164 53.7
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 1.5e-35 153.3 100 75.0
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 2.0e-35 152.9 97 75.3
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 2.6e-35 152.5 97 76.3
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 3.4e-35 152.1 101 77.2
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 3.4e-35 152.1 97 75.3
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 4.5e-35 151.8 99 77.8
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 5.8e-35 151.4 97 75.3
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 7.6e-35 151.0 92 75.0
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 7.6e-35 151.0 98 78.6
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 9.9e-35 150.6 101 76.2
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 1.3e-34 150.2 101 77.2
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 1.3e-34 150.2 97 72.2
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 2.2e-34 149.4 97 76.3
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 2.2e-34 149.4 97 73.2
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 2.2e-34 149.4 87 81.6
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 2.2e-34 149.4 96 77.1
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 3.8e-34 148.7 95 74.7
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 3.8e-34 148.7 90 76.7
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 4.9e-34 148.3 97 74.2
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 6.4e-34 147.9 98 77.6
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 6.4e-34 147.9 92 81.5
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 8.4e-34 147.5 90 77.8
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 1.1e-33 147.1 101 74.3
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.1e-33 147.1 89 82.0
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 1.1e-33 147.1 121 63.6
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 1.4e-33 146.7 100 72.0
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 1.4e-33 146.7 100 72.0
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.4e-33 146.0 109 67.9
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 2.3e-31 139.4 96 66.7
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 3.9e-31 138.7 90 71.1
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 3.9e-31 138.7 90 71.1
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 1.5e-30 136.7 108 64.8
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 1.9e-30 136.3 90 71.1
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 2.1e-29 132.9 162 46.3
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 2.0e-27 126.3 74 81.1
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 3.4e-27 125.6 88 72.7
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 7.6e-27 124.4 94 64.9
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 4.9e-26 121.7 94 64.9
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 6.5e-26 121.3 91 64.8
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 2.5e-25 119.4 91 61.5
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 2.5e-25 119.4 200 39.0
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 3.5e-24 115.5 96 58.3
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 7.9e-24 114.4 97 58.8
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 3.7e-21 105.5 98 56.1
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 2.6e-19 99.4 60 80.0
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.2e-18 96.3 53 83.0
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 2.1e-16 89.7 55 81.8
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 1.5e-14 83.6 88 50.0
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 1.3e-13 80.5 97 46.4
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 8.2e-13 77.8 54 70.4
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 8.2e-13 77.8 54 70.4
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 6.5e-10 68.2 42 76.2
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 2.1e-08 63.2 31 93.5
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 3.6e-08 62.4 90 42.2
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 4.3e-06 55.5 33 78.8
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 5.7e-06 55.1 31 77.4


User provided reference genes

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