Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 1.1e-139 500.0 256 100.0
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 1.6e-98 363.2 247 75.7
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 7.2e-91 337.8 243 71.6
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 1.2e-90 337.0 244 71.3
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 8.0e-90 334.3 243 71.6
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 1.8e-89 333.2 248 70.6
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 3.0e-89 332.4 240 71.7
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 1.5e-88 330.1 248 70.2
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 2.8e-87 325.9 252 69.8
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 8.3e-87 324.3 252 67.9
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 1.2e-85 320.5 248 68.1
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 3.5e-85 318.9 249 65.5
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 3.8e-84 315.5 248 68.5
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 8.6e-84 314.3 248 64.5
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 1.5e-83 313.5 231 69.7
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 1.9e-83 313.2 232 69.0
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 4.3e-83 312.0 208 71.6
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 7.3e-83 311.2 245 65.3
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 1.6e-82 310.1 234 68.4
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 2.1e-82 309.7 203 76.4
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 2.1e-82 309.7 231 68.8
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 2.8e-82 309.3 244 65.2
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 1.0e-81 307.4 244 65.2
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 1.0e-81 307.4 245 64.5
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 1.4e-81 307.0 245 63.7
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 4.0e-81 305.4 248 63.7
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 6.8e-81 304.7 247 66.0
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 8.9e-81 304.3 247 65.2
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 1.2e-80 303.9 248 63.7
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 1.5e-80 303.5 243 63.8
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 2.0e-80 303.1 248 62.9
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 2.0e-80 303.1 244 66.8
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 2.6e-80 302.8 248 64.5
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 5.8e-80 301.6 211 71.6
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 9.8e-80 300.8 247 62.3
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.4e-79 298.1 241 64.3
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 6.4e-79 298.1 246 63.4
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 6.4e-79 298.1 241 64.7
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 1.1e-78 297.4 253 63.2
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 1.1e-78 297.4 281 59.4
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 1.4e-78 297.0 245 64.1
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.9e-78 296.6 253 63.6
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 2.4e-78 296.2 240 64.2
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 3.2e-78 295.8 249 63.9
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 4.1e-78 295.4 249 64.3
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 4.1e-78 295.4 258 61.6
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 9.2e-78 294.3 253 62.8
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 9.2e-78 294.3 248 62.9
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 1.2e-77 293.9 244 63.1
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 1.6e-77 293.5 243 62.6
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 2.0e-77 293.1 251 61.8
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 2.0e-77 293.1 246 62.2
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 6.0e-77 291.6 230 66.1
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 6.0e-77 291.6 245 62.0
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 7.8e-77 291.2 244 62.3
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 7.8e-77 291.2 244 62.3
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 7.8e-77 291.2 244 62.3
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 1.0e-76 290.8 244 61.9
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 3.9e-76 288.9 246 61.4
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 1.5e-75 287.0 244 62.7
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 1.5e-75 287.0 247 64.0
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 1.9e-75 286.6 241 61.4
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 2.5e-75 286.2 246 59.8
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 3.3e-75 285.8 248 59.7
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 3.3e-75 285.8 205 68.3
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 5.6e-75 285.0 252 61.9
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 7.3e-75 284.6 245 60.4
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 7.3e-75 284.6 207 68.1
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.6e-74 283.5 251 62.5
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 2.1e-74 283.1 256 57.4
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 2.1e-74 283.1 235 63.4
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 2.8e-74 282.7 243 61.3
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 3.6e-74 282.3 248 59.7
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 3.6e-74 282.3 257 58.0
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 6.2e-74 281.6 251 59.8
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 8.0e-74 281.2 229 62.9
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 1.8e-73 280.0 223 63.2
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.3e-73 279.6 255 61.2
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 8.9e-73 277.7 250 58.4
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 1.2e-72 277.3 250 62.4
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 1.7e-71 273.5 242 58.7
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.1e-70 270.8 264 59.8
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 1.1e-70 270.8 243 61.7
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 1.4e-70 270.4 230 58.7
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 2.4e-70 269.6 243 62.1
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 3.2e-70 269.2 259 55.2
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 5.4e-70 268.5 264 59.1
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 3.5e-69 265.8 234 58.5
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 7.8e-69 264.6 222 63.1
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.1e-67 260.8 255 59.2
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 5.8e-64 248.4 189 67.2
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 6.4e-63 245.0 239 57.7
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 1.2e-56 224.2 191 63.4
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 2.6e-56 223.0 251 51.4
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 4.4e-56 222.2 229 52.4
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 4.9e-55 218.8 248 52.4
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 1.3e-52 210.7 231 52.8
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 1.6e-50 203.8 220 49.5
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 8.1e-50 201.4 258 50.0
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 2.9e-47 193.0 130 71.5
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 2.1e-45 186.8 166 63.9
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 1.5e-43 180.6 245 48.6
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 2.1e-42 176.8 129 69.0
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 1.1e-41 174.5 216 46.8
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 5.3e-41 172.2 129 69.8
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 5.6e-35 152.1 244 40.2
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 2.1e-29 133.7 84 72.6
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 4.6e-29 132.5 188 40.4
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 5.1e-28 129.0 95 64.2
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 4.5e-24 115.9 93 58.1
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 1.7e-23 114.0 220 37.3
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 4.8e-18 95.9 71 67.6


User provided reference genes

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