Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 3.3e-187 658.3 345 100.0
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.4e-83 312.8 338 53.3
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.1e-81 307.8 355 55.2
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 3.1e-81 306.2 333 55.3
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 3.8e-79 299.3 367 50.7
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 3.3e-78 296.2 335 49.6
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 4.7e-77 292.4 333 54.7
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 6.8e-76 288.5 338 47.6
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 4.9e-74 282.3 351 49.9
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 4.1e-73 279.3 336 48.8
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 5.0e-71 272.3 447 40.7
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 4.9e-66 255.8 337 44.8
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 6.4e-66 255.4 332 44.9
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.4e-60 237.7 340 45.0
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 4.9e-58 229.2 376 42.3
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 1.1e-57 228.0 346 47.1
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 4.1e-57 226.1 358 43.6
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 2.7e-56 223.4 364 40.1
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.6e-56 222.6 328 41.5
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 8.6e-55 218.4 350 44.0
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 8.6e-55 218.4 328 39.9
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 8.6e-55 218.4 328 40.9
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 4.3e-54 216.1 355 42.3
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.8e-52 210.7 349 41.0
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 3.1e-52 209.9 380 38.9
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 8.9e-52 208.4 345 39.4
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 2.6e-51 206.8 340 37.4
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 7.1e-49 198.7 378 38.1
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 4.6e-48 196.1 389 35.0
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.5e-46 191.0 355 42.3
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.5e-46 191.0 354 41.5
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.5e-46 191.0 354 41.5
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 2.5e-46 190.3 388 41.5
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 9.6e-46 188.3 437 36.2
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 6.2e-45 185.7 389 36.0
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.6e-43 180.3 348 39.4
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.3e-42 177.9 359 38.2
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 1.7e-42 177.6 342 40.1
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 6.4e-42 175.6 372 37.6
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 8.4e-42 175.3 455 33.8
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 8.4e-42 175.3 359 38.2
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.1e-41 174.9 394 34.3
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.1e-41 174.9 407 37.6
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.9e-41 174.1 347 37.5
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 5.4e-41 172.6 401 31.4
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 1.2e-40 171.4 350 37.1
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.2e-40 171.4 520 30.4
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.2e-40 171.4 345 34.8
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.6e-40 171.0 368 36.1
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 4.6e-40 169.5 353 36.0
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 3.0e-39 166.8 391 32.2
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 3.9e-39 166.4 474 30.4
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 6.6e-39 165.6 367 36.2
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 2.5e-38 163.7 395 31.6
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 2.5e-38 163.7 387 36.7
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 4.3e-38 162.9 456 30.9
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 5.6e-38 162.5 448 33.3
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 9.6e-38 161.8 377 34.7
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 2.1e-37 160.6 376 34.6
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.1e-37 160.6 378 35.4
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 4.8e-37 159.5 379 38.0
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 6.2e-37 159.1 369 36.9
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 6.2e-37 159.1 377 36.3
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 6.2e-37 159.1 364 36.3
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 6.2e-37 159.1 357 35.9
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.4e-36 157.9 345 39.1
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 1.8e-36 157.5 406 35.5
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.4e-36 157.1 349 34.7
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 1.5e-35 154.5 334 36.5
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 2.0e-35 154.1 411 34.5
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 7.6e-35 152.1 399 33.6
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 7.6e-35 152.1 370 34.1
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 9.9e-35 151.8 370 32.7
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 4.9e-34 149.4 356 36.5
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 6.4e-34 149.1 368 35.9
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.4e-33 147.9 379 31.9
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 5.4e-33 146.0 426 33.3
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.1e-32 144.1 380 31.3
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 2.1e-32 144.1 471 28.0
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 3.0e-31 140.2 429 28.7
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 3.9e-31 139.8 332 31.9
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 6.7e-31 139.0 385 31.9
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 8.7e-31 138.7 371 31.8
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.1e-30 138.3 419 35.6
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.6e-29 134.4 358 33.0
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 1.6e-29 134.4 433 31.9
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 4.8e-29 132.9 365 32.3
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 6.2e-29 132.5 437 31.6
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 8.1e-29 132.1 412 33.0
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 4.0e-28 129.8 533 25.9
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 5.3e-28 129.4 337 31.2
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 6.9e-28 129.0 330 31.2
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 6.9e-28 129.0 360 33.1
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.7e-26 124.4 351 33.0
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 2.9e-26 123.6 384 32.3
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 3.8e-26 123.2 354 32.5
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.4e-25 121.3 418 28.9
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.4e-25 121.3 385 31.4
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 1.4e-25 121.3 384 31.8
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 2.4e-25 120.6 384 31.8
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.2e-24 118.2 418 31.1
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 2.1e-24 117.5 457 28.9
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 6.0e-24 115.9 332 33.4
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.0e-23 113.6 347 35.2
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 5.6e-22 109.4 420 27.1
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 9.6e-22 108.6 441 31.1
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 6.2e-21 105.9 230 36.5
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 5.3e-20 102.8 184 36.4
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 1.0e-18 98.6 187 37.4
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 8.4e-18 95.5 303 30.7
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 2.5e-17 94.0 61 70.5
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 4.2e-17 93.2 471 27.6
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 9.3e-17 92.0 80 58.8
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.2e-16 91.7 123 42.3
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.6e-16 91.3 100 44.0
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 2.3e-15 87.4 247 37.7
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 6.7e-15 85.9 343 24.8
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 8.2e-13 79.0 350 23.7
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 4.1e-12 76.6 53 60.4
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.9e-12 75.9 60 56.7
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 2.0e-11 74.3 52 61.5
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.2e-08 65.1 204 27.5
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 2.1e-08 64.3 75 44.0
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 6.1e-08 62.8 154 31.8
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 3.0e-07 60.5 92 37.0
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 1.9e-06 57.8 93 35.5
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 3.3e-06 57.0 71 38.0
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 4.3e-06 56.6 99 35.4
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 4.3e-06 56.6 102 32.4


User provided reference genes

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