Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 1.1e-95 353.6 218 100.0
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 5.3e-42 175.3 240 50.4
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 5.3e-42 175.3 240 50.4
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.2e-41 174.1 234 49.1
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 2.0e-41 173.3 242 48.3
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 3.4e-41 172.6 233 49.4
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 4.5e-41 172.2 255 56.1
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 1.7e-40 170.2 231 52.8
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 6.5e-40 168.3 227 53.3
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 6.5e-40 168.3 232 53.4
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.9e-39 166.8 235 46.8
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 2.5e-39 166.4 238 55.0
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 4.2e-39 165.6 235 45.5
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 5.5e-39 165.2 243 46.5
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 7.2e-39 164.9 234 55.1
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 1.6e-38 163.7 247 41.7
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.7e-38 162.9 223 49.3
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 6.1e-38 161.8 214 53.3
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 7.9e-38 161.4 224 48.7
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.0e-37 161.0 232 49.6
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 1.8e-37 160.2 225 47.1
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 2.3e-37 159.8 233 51.1
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 2.3e-37 159.8 239 54.4
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 3.0e-37 159.5 226 49.6
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 3.9e-37 159.1 216 47.7
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.1e-36 157.5 261 53.6
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 1.5e-36 157.1 244 52.9
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.5e-36 156.4 223 53.4
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 4.3e-36 155.6 235 46.4
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 7.4e-36 154.8 266 47.0
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 7.4e-36 154.8 228 46.5
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 7.4e-36 154.8 224 47.3
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.3e-35 154.1 252 41.7
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 1.3e-35 154.1 231 52.8
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 2.2e-35 153.3 243 44.4
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 3.7e-35 152.5 247 46.2
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 4.8e-35 152.1 257 49.8
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 8.2e-35 151.4 227 48.0
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 8.2e-35 151.4 225 50.7
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 8.2e-35 151.4 219 47.9
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 1.1e-34 151.0 86 77.9
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.4e-34 150.6 229 45.9
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.4e-34 150.6 241 50.2
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 3.1e-34 149.4 235 51.9
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 4.1e-34 149.1 235 54.0
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 6.9e-34 148.3 240 52.9
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 6.9e-34 148.3 226 46.5
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 9.1e-34 147.9 239 43.1
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 9.1e-34 147.9 238 49.2
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.2e-33 147.5 222 48.2
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 2.0e-33 146.7 272 40.4
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 2.6e-33 146.4 229 52.0
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.6e-33 146.4 241 40.7
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 3.4e-33 146.0 253 52.6
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 3.4e-33 146.0 158 60.1
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 4.5e-33 145.6 254 41.3
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.5e-33 145.6 222 52.7
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 4.5e-33 145.6 225 50.2
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 7.7e-33 144.8 92 77.2
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 7.7e-33 144.8 227 42.3
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.3e-32 144.1 82 80.5
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 2.2e-32 143.3 227 43.2
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 2.2e-32 143.3 158 51.9
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 3.8e-32 142.5 241 51.5
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 6.5e-32 141.7 223 41.3
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 1.1e-31 141.0 214 49.1
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 1.9e-31 140.2 196 44.4
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 1.9e-31 140.2 242 40.5
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.2e-31 139.4 237 51.9
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 4.2e-31 139.0 231 50.2
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 4.2e-31 139.0 105 67.6
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 4.2e-31 139.0 105 68.6
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 7.2e-31 138.3 219 42.9
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 7.2e-31 138.3 210 46.7
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.2e-30 137.5 237 51.1
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 2.1e-30 136.7 171 46.8
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 4.6e-30 135.6 220 41.4
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 6.1e-30 135.2 210 46.2
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 7.9e-30 134.8 245 50.2
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 1.4e-29 134.0 246 43.9
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 2.3e-29 133.3 248 41.5
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 2.3e-29 133.3 79 79.7
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 3.0e-29 132.9 213 45.1
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 3.0e-29 132.9 73 83.6
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 3.0e-29 132.9 96 66.7
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 3.9e-29 132.5 228 42.5
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 8.8e-29 131.3 86 69.8
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 8.8e-29 131.3 111 59.5
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 8.8e-29 131.3 156 48.1
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.1e-28 131.0 221 52.9
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 1.1e-28 131.0 270 43.0
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 2.0e-28 130.2 225 42.2
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.0e-28 130.2 101 66.3
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 2.6e-28 129.8 223 42.2
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 5.7e-28 128.6 258 45.7
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 7.4e-28 128.3 214 48.6
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 9.7e-28 127.9 226 40.3
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 1.3e-27 127.5 214 48.6
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 1.7e-27 127.1 258 41.1
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 2.2e-27 126.7 221 39.8
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 2.8e-27 126.3 214 45.3
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 2.8e-27 126.3 225 44.4
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 4.8e-27 125.6 225 40.9
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 4.8e-27 125.6 255 48.6
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 8.2e-27 124.8 215 42.3
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 1.1e-26 124.4 221 38.9
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 1.4e-26 124.0 214 39.3
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 1.4e-26 124.0 224 37.9
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.8e-26 123.6 220 37.7
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 3.1e-26 122.9 224 40.2
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 3.1e-26 122.9 224 40.2
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 5.3e-26 122.1 150 46.0
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 5.3e-26 122.1 150 46.0
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 6.9e-26 121.7 196 53.1
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 9.1e-26 121.3 235 43.0
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 7.7e-25 118.2 236 39.4
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 7.7e-25 118.2 109 58.7
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 1.3e-24 117.5 109 58.7
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 5.0e-24 115.5 217 43.8
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 5.0e-24 115.5 80 70.0
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.4e-23 114.0 220 36.8
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 1.9e-23 113.6 239 36.4
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.5e-23 113.2 242 42.1
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 9.4e-23 111.3 77 66.2
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 9.4e-23 111.3 87 64.4
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 3.6e-22 109.4 93 60.2
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 4.7e-22 109.0 97 54.6
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 6.1e-22 108.6 213 36.6
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 6.1e-22 108.6 213 36.6
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 7.9e-22 108.2 98 55.1
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 1.4e-21 107.5 161 44.7
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 1.4e-21 107.5 73 72.6
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 3.9e-21 105.9 151 43.7
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 3.9e-21 105.9 217 41.9
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 7.4e-20 101.7 215 37.2
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.0e-17 93.6 98 50.0
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.3e-16 90.9 77 54.5
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.0e-16 89.0 193 44.0
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 1.9e-15 87.0 78 55.1
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 1.1e-10 71.2 146 34.9
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 1.8e-10 70.5 156 36.5
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 2.7e-06 56.6 44 52.3
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 2.7e-06 56.6 175 31.4
SalBow1G0370 Salvia bowleyana HOM05D004801 ORTHO05D005747 8.0e-06 55.1 84 36.9


User provided reference genes

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