Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.2e-114 415.6 208 100.0
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 2.8e-93 345.5 201 84.1
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.2e-91 340.1 201 83.6
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 2.0e-91 339.3 201 83.1
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 5.9e-91 337.8 206 78.6
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.3e-90 336.7 201 83.1
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 1.3e-90 336.7 201 82.1
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.3e-90 336.7 201 84.1
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.3e-90 336.7 201 84.1
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 1.3e-90 336.7 201 84.1
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 2.2e-90 335.9 201 81.6
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 2.9e-90 335.5 201 82.6
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 3.8e-90 335.1 201 81.6
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 3.8e-90 335.1 201 82.6
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 5.0e-90 334.7 201 83.6
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.1e-89 333.6 207 78.3
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.1e-89 333.6 201 80.6
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.9e-89 332.8 201 81.1
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 2.5e-89 332.4 207 78.3
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 3.2e-89 332.0 207 78.3
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 4.2e-89 331.6 201 81.6
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 5.5e-89 331.3 201 81.6
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 9.4e-89 330.5 201 81.6
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 1.2e-88 330.1 201 81.1
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 2.7e-88 328.9 200 80.0
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.7e-88 328.2 199 81.4
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.1e-88 327.8 199 81.4
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.1e-88 327.8 199 81.4
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 6.1e-88 327.8 201 81.1
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.0e-87 327.0 202 80.7
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.0e-87 327.0 199 80.9
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.4e-87 326.6 201 80.6
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.8e-87 326.2 201 80.1
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 2.3e-87 325.9 201 79.1
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 2.3e-87 325.9 200 80.0
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 3.9e-87 325.1 201 79.6
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 3.9e-87 325.1 198 79.8
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 6.7e-87 324.3 199 78.4
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 8.8e-87 323.9 201 79.6
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.0e-86 322.8 201 78.1
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.6e-86 322.4 201 78.1
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 4.4e-86 321.6 200 78.5
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 9.7e-86 320.5 193 80.3
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 9.7e-86 320.5 201 77.6
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 2.2e-85 319.3 201 77.6
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.8e-85 318.9 191 82.7
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 3.7e-85 318.5 201 78.1
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 3.7e-85 318.5 201 78.1
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 6.3e-85 317.8 201 77.6
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.4e-84 316.6 189 82.0
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.8e-84 316.2 200 75.0
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 3.1e-84 315.5 201 76.6
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 5.3e-84 314.7 202 77.7
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 5.3e-84 314.7 201 77.6
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 7.0e-84 314.3 201 77.1
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 9.1e-84 313.9 197 77.2
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.2e-83 313.5 200 74.0
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.0e-83 312.8 200 76.5
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 2.0e-83 312.8 202 76.7
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 2.6e-83 312.4 201 78.1
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.2e-82 309.3 203 75.9
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 2.9e-82 308.9 198 76.3
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 5.0e-82 308.1 203 75.4
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.0e-82 308.1 203 75.4
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 6.5e-82 307.8 201 74.1
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 8.5e-82 307.4 200 76.0
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 8.5e-82 307.4 201 75.1
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 2.5e-81 305.8 198 77.3
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 3.2e-81 305.4 201 72.6
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 3.2e-81 305.4 198 76.8
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 1.2e-80 303.5 193 77.7
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.2e-80 303.5 226 69.0
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.6e-80 303.1 198 76.8
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 1.6e-80 303.1 198 76.8
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.6e-80 302.0 226 69.0
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 3.6e-80 302.0 200 74.0
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 4.7e-80 301.6 193 77.7
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 6.1e-80 301.2 192 80.2
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.0e-79 300.4 199 75.4
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 3.0e-79 298.9 193 77.2
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.0e-79 298.9 192 77.6
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 5.2e-79 298.1 193 76.7
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 6.7e-79 297.7 193 77.7
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 6.7e-79 297.7 199 72.9
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.2e-78 297.0 193 77.2
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.5e-78 296.6 192 78.1
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 4.4e-78 295.0 190 78.4
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 5.7e-78 294.7 200 72.5
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 5.7e-78 294.7 193 76.2
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 5.7e-78 294.7 191 75.9
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 9.7e-78 293.9 193 75.6
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.3e-77 293.5 182 80.8
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 2.2e-77 292.7 190 77.9
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 2.2e-77 292.7 190 77.9
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 4.8e-77 291.6 187 77.0
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 6.3e-77 291.2 200 72.0
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 6.3e-77 291.2 185 80.0
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 8.2e-77 290.8 193 72.5
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.1e-76 290.4 197 72.1
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.8e-76 289.7 201 74.6
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 3.1e-76 288.9 201 74.6
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.1e-76 288.5 201 74.6
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.2e-75 287.0 194 76.3
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 2.0e-75 286.2 177 78.0
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 7.7e-75 284.3 194 75.8
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.9e-74 282.3 201 73.6
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 5.0e-74 281.6 177 78.5
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 6.5e-74 281.2 174 79.3
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 3.2e-73 278.9 199 72.9
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 6.1e-72 274.6 203 68.0
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.8e-71 273.1 200 67.5
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 1.5e-70 270.0 193 69.4
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.5e-70 270.0 192 68.8
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 3.4e-70 268.9 184 74.5
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 4.4e-70 268.5 190 70.5
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 3.7e-69 265.4 178 72.5
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 4.8e-69 265.0 190 68.9
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.4e-68 263.5 192 67.7
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 2.4e-68 262.7 163 79.1
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.5e-67 258.5 179 70.4
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 2.9e-66 255.8 204 64.2
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 5.2e-63 245.0 191 66.0
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 9.8e-62 240.7 171 71.9
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 1.1e-60 237.3 157 75.2
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 1.1e-60 237.3 157 75.2
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 2.7e-59 232.6 185 65.9
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 3.5e-59 232.3 204 61.8
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 6.6e-58 228.0 175 63.4
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 9.5e-57 224.2 175 62.3
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 6.1e-56 221.5 197 62.4
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 4.4e-54 215.3 175 60.0
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 7.8e-51 204.5 192 58.3
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 7.8e-51 204.5 131 73.3
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 8.6e-50 201.1 198 55.6
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 8.0e-48 194.5 111 83.8
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 6.4e-45 184.9 175 53.1
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.0e-42 177.6 113 77.0
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.1e-41 174.1 172 50.6
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 1.4e-39 167.2 94 86.2
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.5e-38 163.7 209 51.2
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.7e-34 150.2 88 80.7
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 9.2e-28 127.9 156 42.9
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.0e-26 124.4 187 43.3
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.8e-23 113.6 70 77.1
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 6.9e-23 111.7 156 43.6
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 9.0e-23 111.3 68 75.0
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 4.4e-22 109.0 177 37.3
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 4.9e-21 105.5 174 37.4
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.5e-17 93.2 66 60.6
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 1.4e-15 87.4 66 60.6
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 2.4e-15 86.7 58 72.4
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.7e-13 80.5 103 40.8
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.7e-13 80.5 113 44.2
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 4.2e-12 75.9 62 59.7
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 1.3e-10 70.9 70 61.4
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 1.1e-09 67.8 154 35.1
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.5e-09 67.4 38 84.2


User provided reference genes

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