Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g07100 Coffea canephora HOM05D006713 ORTHO05D008601 3.0e-229 798.1 386 100.0
Dinv26425 Davidia involucrata HOM05D006713 ORTHO05D008601 9.7e-140 500.7 337 70.0
FvH4_6g26190 Fragaria vesca HOM05D006713 ORTHO05D008601 2.2e-139 499.6 364 65.9
RcHm_v2.0_Chr2g0126401 Rosa chinensis HOM05D006713 ORTHO05D008601 2.8e-139 499.2 367 65.7
FAN05G2673 Fragaria x ananassa HOM05D006713 ORTHO05D008601 6.3e-139 498.0 367 65.4
CSS0037354 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 1.8e-138 496.5 381 63.0
GSVIVG01020539001 Vitis vinifera HOM05D006713 ORTHO05D008601 1.3e-136 490.3 387 61.8
QL02p049491 Quercus lobata HOM05D006713 ORTHO05D008601 1.7e-136 490.0 347 67.1
QL08p038662 Quercus lobata HOM05D006713 ORTHO05D008601 1.7e-136 490.0 347 67.1
Peaxi162Scf00132g00240 Petunia axillaris HOM05D006713 ORTHO05D008601 2.9e-136 489.2 333 70.0
Eucgr.A01814 Eucalyptus grandis HOM05D006713 ORTHO05D008601 2.5e-135 486.1 337 68.8
FAN09G0901 Fragaria x ananassa HOM05D006713 ORTHO05D008601 2.5e-135 486.1 364 64.6
Solyc07g054070.4 Solanum lycopersicum HOM05D006713 ORTHO05D008601 9.4e-135 484.2 356 65.4
vmacro12297 Vaccinium macrocarpon HOM05D006713 ORTHO05D008601 4.7e-134 481.9 336 68.2
Atru.chr6.3001 Acer truncatum HOM05D006713 ORTHO05D008601 8.0e-134 481.1 370 63.2
PGSC0003DMG400018345 Solanum tuberosum HOM05D006713 ORTHO05D008601 1.8e-133 479.9 354 65.0
TAR235G0002 Trochodendron aralioides HOM05D006713 ORTHO05D008601 1.8e-133 479.9 379 60.9
FAN02G3934 Fragaria x ananassa HOM05D006713 ORTHO05D008601 4.0e-133 478.8 373 62.7
Gorai.005G201900 Gossypium raimondii HOM05D006713 ORTHO05D008601 4.0e-133 478.8 334 67.4
Gohir.D02G180200 Gossypium hirsutum HOM05D006713 ORTHO05D008601 5.2e-133 478.4 334 67.4
Gohir.A03G157000 Gossypium hirsutum HOM05D006713 ORTHO05D008601 2.0e-132 476.5 334 67.4
Potri.013G132100 Populus trichocarpa HOM05D006713 ORTHO05D008601 1.3e-131 473.8 391 59.6
MSTRG.12823 Avicennia marina HOM05D006713 ORTHO05D008601 2.2e-131 473.0 388 62.1
Hma1.2p1_1201F.1_g266570 Hydrangea macrophylla HOM05D006713 ORTHO05D008601 2.8e-131 472.6 418 56.9
ECA234G3347 Erigeron canadensis HOM05D006713 ORTHO05D008601 3.7e-131 472.2 347 63.4
CAN.G248.32 Capsicum annuum HOM05D006713 ORTHO05D008601 1.4e-130 470.3 342 65.5
Ciclev10015547m.g Citrus clementina HOM05D006713 ORTHO05D008601 1.8e-130 469.9 332 66.9
HanXRQChr17g0556501 Helianthus annuus HOM05D006713 ORTHO05D008601 1.8e-130 469.9 347 63.7
MD17G1241000 Malus domestica HOM05D006713 ORTHO05D008601 3.1e-130 469.2 370 64.1
TWI18G1058 Tripterygium wilfordii HOM05D006713 ORTHO05D008601 3.1e-130 469.2 389 60.7
Duzib052G0863 Durio zibethinus HOM05D006713 ORTHO05D008601 4.1e-130 468.8 336 67.3
Nn1g06572 Nelumbo nucifera HOM05D006713 ORTHO05D008601 4.1e-130 468.8 335 67.2
Lsat_1_v5_gn_8_133201 Lactuca sativa HOM05D006713 ORTHO05D008601 5.4e-130 468.4 331 65.9
Aqoxy1G02470 Aquilegia oxysepala HOM05D006713 ORTHO05D008601 7.0e-130 468.0 357 63.3
CsaV3_6G012990 Cucumis sativus L. HOM05D006713 ORTHO05D008601 1.6e-129 466.8 371 62.3
Migut.H01188 Erythranthe guttata HOM05D006713 ORTHO05D008601 2.0e-129 466.5 335 66.6
CANSAT78G0617 Cannabis sativa HOM05D006713 ORTHO05D008601 2.7e-129 466.1 357 63.6
Glyma.13G297500 Glycine max HOM05D006713 ORTHO05D008601 2.9e-128 462.6 328 67.1
Sabra13G0111600 Salix brachista HOM05D006713 ORTHO05D008601 2.9e-128 462.6 416 56.5
Rhsim06G0143600 Rhododendron simsii HOM05D006713 ORTHO05D008601 8.6e-128 461.1 378 59.5
Actinidia09856 Actinidia chinensis HOM05D006713 ORTHO05D008601 1.2e-126 457.2 359 62.4
THA.LOC104815960 Tarenaya hassleriana HOM05D006713 ORTHO05D008601 1.4e-125 453.8 342 62.6
MBI06_g06484_MAGBIO Magnolia biondii HOM05D006713 ORTHO05D008601 3.0e-125 452.6 345 64.6
VMungo1080G0618 Vigna mungo HOM05D006713 ORTHO05D008601 4.0e-125 452.2 327 66.1
arahy.Tifrunner.gnm1.ann1.Q4ZJSX Arachis hypogaea HOM05D006713 ORTHO05D008601 4.4e-124 448.7 374 61.2
Ah.01g015180 Amaranthus hybridus HOM05D006713 ORTHO05D008601 1.7e-123 446.8 333 64.3
arahy.Tifrunner.gnm1.ann1.FW5TAU Arachis hypogaea HOM05D006713 ORTHO05D008601 2.2e-123 446.4 332 66.0
DCAR_021241 Daucus carota HOM05D006713 ORTHO05D008601 4.9e-123 445.3 338 62.7
Lj3g0026133 Lotus japonicus HOM05D006713 ORTHO05D008601 1.4e-122 443.7 359 60.4
Psat5g271440 Pisum sativum HOM05D006713 ORTHO05D008601 3.5e-121 439.1 340 63.8
Sc21g0002760 Simmondsia chinensis HOM05D006713 ORTHO05D008601 5.0e-120 435.3 371 56.3
Lj8A113G48 Lonicera japonica HOM05D006713 ORTHO05D008601 1.1e-119 434.1 335 62.4
Medtr2g090335 Medicago truncatula HOM05D006713 ORTHO05D008601 1.9e-119 433.3 335 62.4
Sp1g02570 Schrenkiella parvula HOM05D006713 ORTHO05D008601 1.9e-119 433.3 377 57.0
Cpa.g.sc34.156 Carica papaya HOM05D006713 ORTHO05D008601 2.5e-119 433.0 320 64.7
Lalb_Chr14g0366891 Lupinus albus HOM05D006713 ORTHO05D008601 2.5e-119 433.0 335 62.4
EL10Ac9g20760 Beta vulgaris HOM05D006713 ORTHO05D008601 9.5e-119 431.0 374 57.0
C08p52690 Brassica napus HOM05D006713 ORTHO05D008601 1.2e-118 430.6 337 60.8
BcaC07g42238 Brassica carinata HOM05D006713 ORTHO05D008601 3.6e-118 429.1 337 60.5
BolC8t52795H Brassica oleracea HOM05D006713 ORTHO05D008601 3.6e-118 429.1 337 60.5
BcaC07g42233 Brassica carinata HOM05D006713 ORTHO05D008601 6.1e-118 428.3 335 61.2
A09p68250 Brassica napus HOM05D006713 ORTHO05D008601 6.1e-118 428.3 337 60.8
BraA09t42160Z Brassica rapa HOM05D006713 ORTHO05D008601 6.1e-118 428.3 337 60.8
CARHR003020 Cardamine hirsuta HOM05D006713 ORTHO05D008601 1.5e-116 423.7 359 57.9
AUR62038189 Chenopodium quinoa HOM05D006713 ORTHO05D008601 1.5e-116 423.7 327 62.1
AT1G03687 Arabidopsis thaliana HOM05D006713 ORTHO05D008601 4.4e-116 422.2 335 60.9
Thhalv10007899m.g Eutrema salsugineum HOM05D006713 ORTHO05D008601 1.7e-115 420.2 329 61.1
AL1G13180 Arabidopsis lyrata HOM05D006713 ORTHO05D008601 2.9e-115 419.5 335 60.6
Carub.0001s0279 Capsella rubella HOM05D006713 ORTHO05D008601 6.4e-115 418.3 335 60.9
CDE10G0241 Ceratophyllum demersum HOM05D006713 ORTHO05D008601 1.4e-114 417.2 334 61.7
Aa31LG1G20990 Aethionema arabicum HOM05D006713 ORTHO05D008601 1.8e-114 416.8 328 60.4
Nitab4.5_0002169g0110 Nicotiana tabacum HOM05D006713 ORTHO05D008601 6.6e-112 408.3 341 60.1
HPP92_023892 Vanilla planifolia HOM05D006713 ORTHO05D008601 1.5e-111 407.1 333 59.5
Nitab4.5_0000512g0100 Nicotiana tabacum HOM05D006713 ORTHO05D008601 5.6e-111 405.2 347 58.5
Hund01101 Selenicereus undatus HOM05D006713 ORTHO05D008601 6.2e-110 401.7 400 52.2
ATR0665G517 Amborella trichopoda HOM05D006713 ORTHO05D008601 2.0e-108 396.7 332 56.3
HPP92_023829 Vanilla planifolia HOM05D006713 ORTHO05D008601 5.8e-108 395.2 332 57.5
Prupe.3G137200 Prunus persica HOM05D006713 ORTHO05D008601 6.0e-105 385.2 395 52.2
Haze_13156 Corylus avellana HOM05D006713 ORTHO05D008601 1.3e-104 384.0 390 53.1
CSS0039998 Camellia sinensis var. sinensis HOM05D006713 ORTHO05D008601 8.6e-104 381.3 303 60.4
Zm00001eb273220 Zea mays HOM05D006713 ORTHO05D008601 8.6e-104 381.3 332 56.0
ClCG02G017610 Citrullus lanatus HOM05D006713 ORTHO05D008601 1.5e-103 380.6 525 43.0
PSO541G1719 Papaver somniferum HOM05D006713 ORTHO05D008601 8.1e-102 374.8 385 52.2
PSO675G6747 Papaver somniferum HOM05D006713 ORTHO05D008601 6.8e-101 371.7 385 51.9
Sopen07g028010 Solanum pennellii HOM05D006713 ORTHO05D008601 6.8e-101 371.7 263 65.0
Ca_01502_v3 Cicer arietinum L. HOM05D006713 ORTHO05D008601 1.1e-98 364.4 342 55.6
Manes.12G089598 Manihot esculenta HOM05D006713 ORTHO05D008601 1.4e-98 364.0 288 61.5
CiPaw.03G176500 Carya illinoinensis HOM05D006713 ORTHO05D008601 3.9e-96 355.9 291 61.5
Phvul.005G104000 Phaseolus vulgaris HOM05D006713 ORTHO05D008601 5.6e-95 352.1 251 64.9
Thecc.02G179100 Theobroma cacao HOM05D006713 ORTHO05D008601 5.6e-95 352.1 234 70.9
AUR62038063 Chenopodium quinoa HOM05D006713 ORTHO05D008601 9.5e-95 351.3 319 56.4
unitig_62.g23167 Utricularia gibba HOM05D006713 ORTHO05D008601 3.6e-94 349.4 304 56.6
Sed0026559 Sechium edule HOM05D006713 ORTHO05D008601 3.4e-92 342.8 261 64.8
SGA_v2.0_scaffold109G31136 Striga asiatica HOM05D006713 ORTHO05D007323 3.8e-83 312.8 399 45.6
AagrBONN_evm.TU.Sc2ySwM_117.1346 Anthoceros agrestis HOM05D006713 ORTHO05D008601 3.5e-81 306.2 336 45.2
MELO3C013617.2 Cucumis melo HOM05D006713 ORTHO05D008601 4.3e-79 299.3 378 45.2
Os06g0342750 Oryza sativa ssp. japonica HOM05D006713 ORTHO05D008601 8.1e-78 295.0 237 60.3
Mapoly0088s0019 Marchantia polymorpha HOM05D006713 ORTHO05D008601 4.0e-77 292.7 323 47.1
SMO117G0197 Selaginella moellendorffii HOM05D006713 ORTHO05D008601 1.1e-71 274.6 330 42.4
Glyma.12G203966 Glycine max HOM05D006713 ORTHO05D008601 3.3e-71 273.1 163 74.2
SalBow1G6029 Salvia bowleyana HOM05D006713 ORTHO05D008601 5.6e-71 272.3 194 67.5
CBR_g35040 Chara braunii HOM05D006713 ORTHO05D008601 2.2e-51 207.2 331 37.2
SalBow1G1793 Salvia bowleyana HOM05D006713 ORTHO05D008601 7.9e-41 172.2 169 53.3
MELO3C001128.2 Cucumis melo HOM05D006713 ORTHO05D008601 1.8e-29 134.4 78 76.9
Glyma.12G204032 Glycine max HOM05D006713 ORTHO05D008601 2.4e-29 134.0 103 65.0
Os06g0343000 Oryza sativa ssp. japonica HOM05D006713 ORTHO05D008601 3.7e-22 110.2 102 52.0
MELO3C013610.2 Cucumis melo HOM05D006713 ORTHO05D008601 5.9e-20 102.8 74 68.9
Oeu023431.1 Olea europaea HOM05D006713 ORTHO05D008601 8.0e-17 92.4 59 74.6
Oeu045818.1 Olea europaea HOM05D006713 ORTHO05D008601 8.0e-17 92.4 73 64.4
SEGI_39135 Sequoiadendron giganteum HOM05D006713 ORTHO05D008601 9.1e-13 79.0 109 38.5
MELO3C013612.2 Cucumis melo HOM05D006713 ORTHO05D008601 3.8e-11 73.6 47 66.0
MELO3C035062.2 Cucumis melo HOM05D006713 ORTHO05D008601 3.4e-07 60.5 38 73.7
SEGI_34366 Sequoiadendron giganteum HOM05D006713 ORTHO05D008601 4.4e-07 60.1 75 42.7


User provided reference genes

Program Settings