Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 3.6e-307 1057.4 519 100.0
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 8.3e-203 710.7 537 65.7
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 3.2e-194 682.2 521 66.2
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 7.8e-193 677.6 547 62.9
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 7.8e-193 677.6 547 62.9
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 7.8e-193 677.6 553 63.1
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.3e-184 650.2 552 60.0
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 4.8e-182 641.7 522 63.8
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 1.1e-181 640.6 522 63.0
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.4e-181 639.4 525 62.9
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.0e-181 638.6 552 60.5
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 4.0e-181 638.6 524 62.4
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 4.9e-179 631.7 520 63.1
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 4.9e-179 631.7 524 59.9
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.4e-178 629.4 525 61.9
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 7.1e-178 627.9 504 63.9
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.2e-177 627.1 532 59.2
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 2.7e-177 625.9 518 60.8
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 2.7e-177 625.9 553 60.0
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 1.9e-175 619.8 522 60.5
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.1e-173 614.0 522 60.7
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 2.0e-172 609.8 525 58.7
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 4.2e-170 602.1 538 57.4
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 1.2e-169 600.5 538 56.7
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.3e-168 597.0 522 58.6
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.3e-168 597.0 522 58.6
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 1.8e-168 596.7 518 59.1
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 3.0e-168 595.9 520 58.1
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 3.0e-168 595.9 525 59.6
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 5.1e-168 595.1 530 56.8
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.1e-167 594.0 519 58.2
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.5e-167 593.6 527 57.9
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 2.5e-167 592.8 520 57.9
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 2.5e-167 592.8 525 59.2
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 4.3e-167 592.0 528 57.6
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 9.6e-167 590.9 529 57.8
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 9.6e-167 590.9 519 57.8
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 1.3e-166 590.5 536 57.3
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.1e-166 589.7 521 57.8
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 2.8e-166 589.3 528 57.2
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 3.8e-163 578.9 530 56.0
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 1.4e-162 577.0 530 56.2
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 5.5e-162 575.1 531 57.1
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 9.3e-162 574.3 525 54.9
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.2e-161 573.9 531 55.7
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 6.0e-161 571.6 518 55.6
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 1.8e-160 570.1 532 56.2
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 3.9e-160 568.9 551 55.5
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 5.1e-160 568.5 522 56.3
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 4.1e-157 558.9 518 54.6
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 4.1e-157 558.9 529 54.3
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 9.0e-157 557.8 521 55.7
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.5e-156 557.0 546 54.9
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 2.0e-156 556.6 521 54.5
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 3.4e-156 555.8 520 55.6
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 1.6e-153 547.0 539 54.0
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 2.7e-153 546.2 521 57.0
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.3e-152 543.9 520 54.4
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 2.3e-152 543.1 552 54.7
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.1e-151 540.8 522 54.8
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 2.5e-151 539.7 518 53.5
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 6.3e-150 535.0 507 55.4
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 6.3e-150 535.0 543 53.0
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 1.8e-149 533.5 519 54.3
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 3.1e-149 532.7 543 51.7
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 3.4e-148 529.3 518 54.2
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 3.2e-146 522.7 516 55.0
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 9.4e-146 521.2 518 53.5
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 1.2e-145 520.8 519 50.9
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 7.9e-145 518.1 518 51.2
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 1.0e-144 517.7 519 49.7
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 8.8e-144 514.6 541 52.1
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.0e-143 513.5 477 55.1
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 2.5e-143 513.1 505 53.5
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 2.8e-142 509.6 527 50.5
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 2.4e-141 506.5 526 50.2
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 9.1e-141 504.6 486 56.6
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 4.5e-140 502.3 530 49.8
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 1.1e-138 497.7 526 49.2
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 1.2e-137 494.2 523 48.4
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 4.7e-137 492.3 534 50.4
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 8.8e-136 488.0 511 49.3
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 8.8e-136 488.0 523 48.4
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.1e-135 487.6 523 48.4
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.4e-135 485.7 518 53.3
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 5.7e-135 485.3 531 48.6
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 9.7e-135 484.6 525 47.8
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 2.8e-134 483.0 524 47.7
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 9.1e-133 478.0 527 49.3
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 2.0e-132 476.9 527 49.5
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.3e-131 474.2 526 48.3
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.3e-131 474.2 479 53.0
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 2.2e-131 473.4 526 48.3
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.9e-130 470.3 528 47.9
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.2e-130 469.2 518 47.3
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 3.0e-128 463.0 504 48.2
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 5.2e-128 462.2 519 49.1
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.1e-127 461.1 557 45.2
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 2.4e-125 453.4 520 47.7
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-123 446.8 500 48.2
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 2.2e-123 446.8 507 47.5
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 8.3e-118 428.3 553 43.4
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 1.6e-116 424.1 523 44.6
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 2.7e-116 423.3 531 46.9
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.5e-116 422.5 517 47.6
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 5.9e-116 422.2 528 45.8
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 5.0e-115 419.1 527 46.7
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 8.0e-113 411.8 520 42.7
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.8e-112 410.6 529 44.4
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.8e-107 392.9 500 44.6
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.5e-106 391.0 518 44.8
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 9.5e-106 388.3 529 43.1
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 6.1e-105 385.6 528 42.4
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 3.0e-104 383.3 412 49.5
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.5e-103 380.9 538 41.1
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 1.3e-99 367.9 518 40.7
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.3e-98 362.1 517 41.6
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-97 360.9 517 41.8
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 2.0e-92 344.0 535 38.5
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.3e-90 335.5 522 40.0
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 8.1e-89 332.0 572 38.1
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-84 317.8 474 40.1
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.7e-84 317.0 474 40.1
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 1.7e-83 314.3 485 39.6
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 5.6e-74 282.7 502 34.1
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.6e-63 245.7 469 37.1
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.6e-63 245.7 469 37.1
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 4.6e-60 236.5 529 31.9
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-59 234.2 380 36.8
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 2.0e-55 221.1 281 46.3
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 3.3e-50 203.8 313 40.9
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.2e-47 195.3 394 33.8
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 7.1e-45 186.0 144 64.6
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 8.7e-43 179.1 486 28.4
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 6.3e-41 172.9 151 56.3
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 6.3e-41 172.9 518 28.0
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.0e-38 165.6 533 26.5
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.1e-37 162.2 423 28.8
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.3e-35 155.2 527 24.9
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 2.4e-32 144.4 456 27.9
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 1.5e-26 125.2 447 24.2
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.7e-23 112.8 303 31.0
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 7.7e-23 112.8 483 25.3
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 2.5e-21 107.8 98 56.1
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.0e-19 102.4 65 72.3
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 1.8e-16 91.7 513 22.2
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 4.1e-16 90.5 53 71.7
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 5.3e-16 90.1 380 25.0
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 2.0e-15 88.2 54 66.7
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 3.8e-14 84.0 55 69.1
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.1e-13 82.4 180 31.7
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-11 74.3 81 46.9
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 4.0e-11 73.9 121 30.6
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 5.2e-11 73.6 87 41.4
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 1.7e-09 68.6 63 44.4


User provided reference genes

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