Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 1.0e-87 326.6 159 100.0
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 4.7e-64 248.1 155 76.1
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 1.2e-62 243.4 159 71.1
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 3.4e-62 241.9 159 75.5
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 3.4e-62 241.9 159 73.0
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 3.4e-62 241.9 154 75.3
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 3.4e-62 241.9 154 76.0
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 7.5e-62 240.7 154 76.6
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 2.2e-61 239.2 154 76.6
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 3.7e-61 238.4 159 72.3
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 4.9e-61 238.0 161 72.7
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 1.1e-60 236.9 154 74.7
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 1.8e-60 236.1 154 74.7
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 1.8e-60 236.1 159 72.3
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 2.4e-60 235.7 154 74.0
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 3.1e-60 235.3 150 76.0
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 3.1e-60 235.3 154 74.0
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 4.1e-60 235.0 154 73.4
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 1.6e-59 233.0 153 73.2
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 2.7e-59 232.3 150 74.7
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 3.5e-59 231.9 159 71.7
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 1.3e-58 229.9 159 69.8
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 2.3e-58 229.2 155 71.6
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 2.3e-58 229.2 154 70.8
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 2.3e-58 229.2 150 71.3
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 2.9e-58 228.8 154 72.1
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 8.6e-58 227.3 155 71.0
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 1.1e-57 226.9 154 71.4
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 1.5e-57 226.5 150 72.0
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 3.3e-57 225.3 154 71.4
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 3.3e-57 225.3 154 70.1
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 3.3e-57 225.3 170 65.3
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 4.2e-57 224.9 157 68.8
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 5.5e-57 224.6 154 70.8
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 7.2e-57 224.2 156 68.6
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 9.5e-57 223.8 150 73.3
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 1.6e-56 223.0 155 71.0
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 1.6e-56 223.0 158 65.8
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 2.8e-56 222.2 155 68.4
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 2.8e-56 222.2 150 70.7
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 3.6e-56 221.9 155 69.0
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 3.6e-56 221.9 154 69.5
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 3.6e-56 221.9 154 71.4
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 6.1e-56 221.1 150 72.7
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 1.4e-55 219.9 150 72.0
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 2.3e-55 219.2 150 70.7
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 4.0e-55 218.4 147 72.1
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 6.8e-55 217.6 150 70.7
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 6.8e-55 217.6 154 69.5
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 6.8e-55 217.6 154 69.5
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 8.9e-55 217.2 150 69.3
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 1.2e-54 216.9 155 69.7
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 1.2e-54 216.9 138 73.2
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 1.2e-54 216.9 159 68.6
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 1.5e-54 216.5 150 70.0
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 2.6e-54 215.7 150 70.7
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 3.4e-54 215.3 150 71.3
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 7.5e-54 214.2 157 70.1
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 2.9e-53 212.2 150 66.0
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 2.9e-53 212.2 150 70.0
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 2.9e-53 212.2 150 68.0
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 4.9e-53 211.5 148 70.9
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 6.3e-53 211.1 155 67.7
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 1.1e-52 210.3 159 67.3
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 1.1e-52 210.3 154 66.9
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 1.1e-52 210.3 154 65.6
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 1.8e-52 209.5 159 67.3
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 2.4e-52 209.1 150 67.3
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 2.4e-52 209.1 150 66.0
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 4.1e-52 208.4 159 67.9
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 5.4e-52 208.0 159 67.3
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 5.4e-52 208.0 159 68.6
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 7.0e-52 207.6 155 67.1
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 9.2e-52 207.2 154 67.5
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 9.2e-52 207.2 154 67.5
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 2.7e-51 205.7 159 66.7
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 3.5e-51 205.3 152 64.5
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 7.8e-51 204.1 159 66.0
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 1.7e-50 203.0 152 63.2
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 3.9e-50 201.8 149 68.5
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 3.9e-50 201.8 149 67.8
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 6.6e-50 201.1 154 66.9
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 6.6e-50 201.1 161 62.7
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.9e-49 199.5 159 63.5
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 5.6e-49 198.0 154 63.0
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 1.2e-48 196.8 154 63.0
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.6e-48 196.4 154 62.3
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 4.7e-48 194.9 142 65.5
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 1.2e-46 190.3 134 68.7
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 1.2e-46 190.3 183 56.3
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 2.2e-45 186.0 154 59.7
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 4.9e-45 184.9 152 59.9
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 4.9e-45 184.9 151 60.3
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 2.4e-44 182.6 151 60.3
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.7e-42 176.4 139 62.6
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.5e-41 173.3 134 61.9
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 7.3e-41 171.0 154 53.9
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 2.0e-38 162.9 98 76.5
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 1.4e-36 156.8 152 54.6
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 2.1e-35 152.9 151 52.3
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 9.5e-33 144.1 89 76.4
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 8.1e-32 141.0 146 50.7
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 5.2e-31 138.3 102 67.6
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 1.5e-30 136.7 101 67.3
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 9.9e-30 134.0 93 68.8
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 2.5e-25 119.4 78 70.5
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.2e-24 117.1 80 72.5
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 8.1e-24 114.4 77 71.4
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 8.1e-24 114.4 77 71.4
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 3.1e-23 112.5 81 71.6
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 6.4e-21 104.8 77 68.8
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 9.3e-20 100.9 78 61.5
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 2.5e-17 92.8 68 64.7
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 1.1e-15 87.4 95 45.3
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 9.9e-14 80.9 57 59.6
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 4.9e-13 78.6 66 59.1
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 1.3e-10 70.5 78 50.0
Hund03009 Selenicereus undatus HOM05D004398 ORTHO05D005268 5.3e-07 58.5 90 32.2
Haze_26658 Corylus avellana HOM05D002214 ORTHO05D005113 2.0e-06 56.6 111 35.1
HanXRQChr13g0402451 Helianthus annuus HOM05D004398 ORTHO05D005268 2.0e-06 56.6 105 29.5
Peaxi162Scf00251g01121 Petunia axillaris HOM05D004398 ORTHO05D005268 2.0e-06 56.6 105 29.5
Nitab4.5_0000508g0250 Nicotiana tabacum HOM05D004398 ORTHO05D005268 2.6e-06 56.2 90 33.3
ClCG08G013040 Citrullus lanatus HOM05D004398 ORTHO05D005268 3.4e-06 55.8 90 31.1
MELO3C011228.2 Cucumis melo HOM05D004398 ORTHO05D005268 3.4e-06 55.8 90 31.1
Cre09.g407373 Chlamydomonas reinhardtii HOM05D004398 ORTHO05D139529 7.6e-06 54.7 68 41.2
Nn2g11907 Nelumbo nucifera HOM05D004398 ORTHO05D005268 7.6e-06 54.7 72 36.1
Nitab4.5_0002339g0050 Nicotiana tabacum HOM05D004398 ORTHO05D005268 7.6e-06 54.7 90 32.2
GSVIVG01035773001 Vitis vinifera HOM05D004398 ORTHO05D005268 7.6e-06 54.7 90 31.1
Cfa013194 Carpinus fangiana HOM05D004398 ORTHO05D005268 9.9e-06 54.3 90 31.1


User provided reference genes

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