Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g06750 Coffea canephora HOM05D006115 ORTHO05D007528 1.3e-88 329.7 173 100.0
Solyc07g054290.1 Solanum lycopersicum HOM05D006115 ORTHO05D007528 1.0e-59 233.8 173 72.8
PGSC0003DMG400018360 Solanum tuberosum HOM05D006115 ORTHO05D007528 3.8e-59 231.9 173 72.3
Sopen07g028230 Solanum pennellii HOM05D006115 ORTHO05D007528 6.5e-59 231.1 173 71.1
Nitab4.5_0001090g0130 Nicotiana tabacum HOM05D006115 ORTHO05D007528 1.1e-58 230.3 177 71.8
Nitab4.5_0005380g0050 Nicotiana tabacum HOM05D006115 ORTHO05D007528 1.1e-58 230.3 181 72.9
Peaxi162Scf00610g00313 Petunia axillaris HOM05D006115 ORTHO05D007528 9.3e-58 227.3 178 70.2
Oeu029929.1 Olea europaea HOM05D006115 ORTHO05D007528 6.0e-57 224.6 175 70.9
Oeu040003.1 Olea europaea HOM05D006115 ORTHO05D007528 3.0e-56 222.2 173 72.3
Peaxi162Scf00132g00062 Petunia axillaris HOM05D006115 ORTHO05D007528 2.5e-55 219.2 179 69.8
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 3.3e-55 218.8 175 71.4
MELO3C018748.2 Cucumis melo HOM05D006115 ORTHO05D007528 4.3e-55 218.4 173 69.9
Dinv03833 Davidia involucrata HOM05D006115 ORTHO05D007528 4.3e-55 218.4 169 71.6
CsaV3_7G004300 Cucumis sativus L. HOM05D006115 ORTHO05D007528 3.7e-54 215.3 173 69.4
ClCG02G001140 Citrullus lanatus HOM05D006115 ORTHO05D007528 8.2e-54 214.2 173 68.8
Phvul.005G105900 Phaseolus vulgaris HOM05D006115 ORTHO05D007528 1.1e-53 213.8 177 69.5
CSS0015532 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 2.4e-53 212.6 180 68.3
CSS0031699 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 2.4e-53 212.6 180 68.3
PGR142G3842 Punica granatum HOM05D006115 ORTHO05D007528 2.4e-53 212.6 188 66.0
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 3.1e-53 212.2 177 70.6
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 4.1e-53 211.8 178 68.0
CiPaw.04G123900 Carya illinoinensis HOM05D006115 ORTHO05D007528 4.1e-53 211.8 177 71.8
MSTRG.12305 Avicennia marina HOM05D006115 ORTHO05D007528 6.9e-53 211.1 178 69.7
HanXRQChr17g0542591 Helianthus annuus HOM05D006115 ORTHO05D007528 9.0e-53 210.7 174 69.0
GSVIVG01030552001 Vitis vinifera HOM05D006115 ORTHO05D007528 9.0e-53 210.7 177 68.4
MSTRG.14200 Avicennia marina HOM05D006115 ORTHO05D007528 1.2e-52 210.3 176 68.8
Hma1.2p1_0875F.1_g231400 Hydrangea macrophylla HOM05D006115 ORTHO05D007528 1.2e-52 210.3 183 67.8
Nn1g03988 Nelumbo nucifera HOM05D006115 ORTHO05D007528 4.5e-52 208.4 180 65.0
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 4.5e-52 208.4 169 68.6
Sed0024793 Sechium edule HOM05D006115 ORTHO05D007528 4.5e-52 208.4 175 69.1
Ciclev10016927m.g Citrus clementina HOM05D006115 ORTHO05D007528 1.0e-51 207.2 182 66.5
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 1.7e-51 206.5 176 68.8
Eucgr.K00947 Eucalyptus grandis HOM05D006115 ORTHO05D007528 1.7e-51 206.5 183 67.8
Lj3g0001000 Lotus japonicus HOM05D006115 ORTHO05D007528 1.7e-51 206.5 180 67.2
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 1.7e-51 206.5 179 68.2
QL08p037826 Quercus lobata HOM05D006115 ORTHO05D007528 2.2e-51 206.1 184 65.8
MD17G1079700 Malus domestica HOM05D006115 ORTHO05D007528 2.9e-51 205.7 178 68.0
PSO210G0967 Papaver somniferum HOM05D006115 ORTHO05D007528 2.9e-51 205.7 185 64.3
Medtr2g090200 Medicago truncatula HOM05D006115 ORTHO05D007528 6.5e-51 204.5 177 66.7
Psat7g036720 Pisum sativum HOM05D006115 ORTHO05D007528 8.4e-51 204.1 177 66.1
FvH4_6g45050 Fragaria vesca HOM05D006115 ORTHO05D007528 1.9e-50 203.0 177 65.5
FAN14G2522 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.9e-50 203.0 177 65.5
Lalb_Chr14g0366761 Lupinus albus HOM05D006115 ORTHO05D007528 2.5e-50 202.6 175 69.1
Manes.08G098700 Manihot esculenta HOM05D006115 ORTHO05D007528 2.5e-50 202.6 178 66.3
PSO832G3416 Papaver somniferum HOM05D006115 ORTHO05D007528 2.5e-50 202.6 181 63.5
CANSAT64G2665 Cannabis sativa HOM05D006115 ORTHO05D007528 3.2e-50 202.2 179 68.2
Gohir.A12G137300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 3.2e-50 202.2 177 68.4
MBI02_g19258_MAGBIO Magnolia biondii HOM05D006115 ORTHO05D007528 3.2e-50 202.2 178 65.7
Duzib132G1267 Durio zibethinus HOM05D006115 ORTHO05D007528 5.5e-50 201.4 179 70.9
Gohir.A01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 7.1e-50 201.1 175 66.9
RcHm_v2.0_Chr2g0162381 Rosa chinensis HOM05D006115 ORTHO05D007528 7.1e-50 201.1 179 67.0
COL.COLO4_35403 Corchorus olitorius HOM05D006115 ORTHO05D007528 9.3e-50 200.7 176 66.5
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 9.3e-50 200.7 177 66.7
TWI75G0783 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 9.3e-50 200.7 181 66.3
Migut.H01055 Erythranthe guttata HOM05D006115 ORTHO05D007528 1.2e-49 200.3 185 63.2
Potri.002G056300 Populus trichocarpa HOM05D006115 ORTHO05D007528 1.6e-49 199.9 180 63.3
VMungo1080G1219 Vigna mungo HOM05D006115 ORTHO05D007528 1.6e-49 199.9 178 66.3
Sed0009578 Sechium edule HOM05D006115 ORTHO05D007528 2.7e-49 199.1 173 63.6
FAN02G4183 Fragaria x ananassa HOM05D006115 ORTHO05D007528 3.5e-49 198.7 181 65.2
Potri.005G206200 Populus trichocarpa HOM05D006115 ORTHO05D007528 3.5e-49 198.7 182 67.6
FAN09G2594 Fragaria x ananassa HOM05D006115 ORTHO05D007528 4.6e-49 198.4 181 65.2
Lalb_Chr24g0399841 Lupinus albus HOM05D006115 ORTHO05D007528 6.1e-49 198.0 179 65.4
SGA_v2.0_scaffold356G49787 Striga asiatica HOM05D006115 ORTHO05D007528 1.0e-48 197.2 173 63.6
Atru.chr6.3034 Acer truncatum HOM05D006115 ORTHO05D007528 1.8e-48 196.4 184 63.6
Lsat_1_v5_gn_3_39480 Lactuca sativa HOM05D006115 ORTHO05D007528 3.0e-48 195.7 177 65.0
Sabra02G0045600 Salix brachista HOM05D006115 ORTHO05D007528 3.0e-48 195.7 182 65.4
TWI18G1016 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 3.0e-48 195.7 180 63.9
Glyma.12G202500 Glycine max HOM05D006115 ORTHO05D007528 8.7e-48 194.1 180 64.4
Sabra05G0156800 Salix brachista HOM05D006115 ORTHO05D007528 1.1e-47 193.7 182 65.4
FAN05G1351 Fragaria x ananassa HOM05D006115 ORTHO05D007528 7.4e-47 191.0 177 62.7
TPR.G35547 Trifolium pratense HOM05D006115 ORTHO05D007528 9.7e-47 190.7 180 62.8
Gohir.D01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 2.2e-46 189.5 178 63.5
Gohir.D12G141300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 2.2e-46 189.5 176 64.2
Gorai.008G152600 Gossypium raimondii HOM05D006115 ORTHO05D007528 2.8e-46 189.1 176 64.2
THA.LOC104827374 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 8.2e-46 187.6 135 71.1
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 1.1e-45 187.2 178 62.9
Aa31LG1G20930 Aethionema arabicum HOM05D006115 ORTHO05D007528 1.4e-45 186.8 174 62.1
AL1G13100 Arabidopsis lyrata HOM05D006115 ORTHO05D007528 1.4e-45 186.8 173 61.3
CDE05G3372 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 1.8e-45 186.4 183 58.5
AUR62041946 Chenopodium quinoa HOM05D006115 ORTHO05D007528 1.8e-45 186.4 186 59.1
HPP92_017628 Vanilla planifolia HOM05D006115 ORTHO05D007528 1.8e-45 186.4 140 75.0
Glyma.13G299200 Glycine max HOM05D006115 ORTHO05D007528 3.1e-45 185.7 173 62.4
Thecc.02G175700 Theobroma cacao HOM05D006115 ORTHO05D007528 3.1e-45 185.7 176 63.6
unitig_26.g9943 Utricularia gibba HOM05D006115 ORTHO05D007528 3.1e-45 185.7 182 59.9
unitig_749.g13954 Utricularia gibba HOM05D006115 ORTHO05D007528 3.1e-45 185.7 183 61.7
A08p37300 Brassica napus HOM05D006115 ORTHO05D007528 4.1e-45 185.3 176 61.4
Carub.0001s0272 Capsella rubella HOM05D006115 ORTHO05D007528 5.3e-45 184.9 172 61.0
Thhalv10008901m.g Eutrema salsugineum HOM05D006115 ORTHO05D007528 5.3e-45 184.9 173 61.3
Ah.08g220260 Amaranthus hybridus HOM05D006115 ORTHO05D007528 6.9e-45 184.5 184 61.4
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 9.0e-45 184.1 179 63.7
THA.LOC104801178 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 1.2e-44 183.7 113 80.5
BraA08t35627Z Brassica rapa HOM05D006115 ORTHO05D007528 1.5e-44 183.3 182 61.0
ECA246G1074 Erigeron canadensis HOM05D006115 ORTHO05D007528 1.5e-44 183.3 173 62.4
BcaC05g24519 Brassica carinata HOM05D006115 ORTHO05D007528 2.0e-44 183.0 174 60.9
C05p02030 Brassica napus HOM05D006115 ORTHO05D007528 2.0e-44 183.0 174 60.9
CARHR002940 Cardamine hirsuta HOM05D006115 ORTHO05D007528 2.0e-44 183.0 172 59.3
Actinidia09875 Actinidia chinensis HOM05D006115 ORTHO05D007528 2.6e-44 182.6 166 65.1
BcaB02g06915 Brassica carinata HOM05D006115 ORTHO05D007528 2.6e-44 182.6 177 61.6
AUR62028441 Chenopodium quinoa HOM05D006115 ORTHO05D007528 3.4e-44 182.2 183 61.7
AT1G03600 Arabidopsis thaliana HOM05D006115 ORTHO05D007528 1.0e-43 180.6 173 59.5
BolC5t28981H Brassica oleracea HOM05D006115 ORTHO05D007528 1.7e-43 179.9 175 61.1
BcaC07g36953 Brassica carinata HOM05D006115 ORTHO05D007528 2.2e-43 179.5 177 58.2
C08p00700 Brassica napus HOM05D006115 ORTHO05D007528 2.2e-43 179.5 177 58.2
BolC8t46868H Brassica oleracea HOM05D006115 ORTHO05D007528 2.2e-43 179.5 178 59.0
BraA10t42481Z Brassica rapa HOM05D006115 ORTHO05D007528 2.2e-43 179.5 174 59.2
A10p02120 Brassica napus HOM05D006115 ORTHO05D007528 3.8e-43 178.7 177 59.9
Sp1g02510 Schrenkiella parvula HOM05D006115 ORTHO05D007528 3.8e-43 178.7 174 59.2
Sc12g0002830 Simmondsia chinensis HOM05D006115 ORTHO05D007528 3.8e-43 178.7 103 86.4
Lj1P733T48 Lonicera japonica HOM05D006115 ORTHO05D007528 1.1e-42 177.2 132 72.7
Lj8P115T48 Lonicera japonica HOM05D006115 ORTHO05D007528 4.2e-42 175.3 110 80.0
Zm00001eb015950 Zea mays HOM05D006115 ORTHO05D007528 7.2e-42 174.5 141 66.7
Zm00001eb395230 Zea mays HOM05D006115 ORTHO05D007528 2.1e-41 172.9 139 66.9
SEGI_04908 Sequoiadendron giganteum HOM05D006115 ORTHO05D007528 4.8e-38 161.8 152 57.9
Os03g0333400 Oryza sativa ssp. japonica HOM05D006115 ORTHO05D007528 1.8e-37 159.8 162 56.2
Duzib052G1052 Durio zibethinus HOM05D006115 ORTHO05D007528 3.1e-37 159.1 174 56.9
Actinidia11067 Actinidia chinensis HOM05D006115 ORTHO05D007528 1.6e-33 146.7 141 64.5
CDE05G0569 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 7.9e-33 144.4 147 59.9
Ca_01513_v3 Cicer arietinum L. HOM05D006115 ORTHO05D007528 7.9e-33 144.4 85 81.2
Pp3c9_26020 Physcomitrium patens HOM05D006115 ORTHO05D007528 5.3e-29 131.7 163 46.0
SMO364G0930 Selaginella moellendorffii HOM05D006115 ORTHO05D007528 5.3e-29 131.7 103 62.1
Mapoly0049s0056 Marchantia polymorpha HOM05D006115 ORTHO05D007528 7.0e-29 131.3 173 45.1
AagrBONN_evm.TU.Sc2ySwM_228.954 Anthoceros agrestis HOM05D006115 ORTHO05D007528 2.6e-28 129.4 128 52.3
CBR_g50764 Chara braunii HOM05D006115 ORTHO05D007528 1.6e-25 120.2 173 43.4
TAR627G0228 Trochodendron aralioides HOM05D006115 ORTHO05D007528 1.4e-24 117.1 132 56.8
MCO14G469 Micromonas commoda HOM05D006115 ORTHO05D007528 2.8e-22 109.4 142 43.0
Cre05.g243800 Chlamydomonas reinhardtii HOM05D006115 ORTHO05D007528 9.1e-21 104.4 162 39.5
Dinv23684 Davidia involucrata HOM05D006115 ORTHO05D007528 1.9e-18 96.7 170 41.2
ATR0693G305 Amborella trichopoda HOM05D006115 ORTHO05D007528 2.5e-18 96.3 129 51.2
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 9.8e-07 57.8 98 28.6
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 9.8e-07 57.8 98 30.6
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 1.3e-06 57.4 98 29.6
Gohir.A10G168700 Gossypium hirsutum HOM05D007072 ORTHO05D008841 2.2e-06 56.6 98 29.6
Nitab4.5_0000043g0120 Nicotiana tabacum HOM05D007072 ORTHO05D008841 2.8e-06 56.2 99 28.3
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 3.7e-06 55.8 99 29.3
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 8.3e-06 54.7 98 28.6
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 8.3e-06 54.7 98 28.6


User provided reference genes

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