Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 2.7e-134 483.4 658 100.0
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 3.2e-66 257.3 227 59.0
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 1.5e-63 248.4 191 62.8
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 2.5e-63 247.7 232 56.0
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 4.8e-62 243.4 234 53.8
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 4.0e-61 240.4 227 51.1
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 1.2e-60 238.8 229 51.1
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 3.4e-60 237.3 179 58.7
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 3.4e-60 237.3 179 58.7
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 4.5e-60 236.9 183 60.1
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 4.5e-60 236.9 179 58.7
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 7.6e-60 236.1 179 61.5
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 1.3e-59 235.3 226 53.1
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 1.3e-59 235.3 212 59.9
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 1.7e-59 235.0 180 60.6
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 1.7e-59 235.0 182 59.3
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 3.8e-59 233.8 174 61.5
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 8.4e-59 232.6 179 58.7
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 1.4e-58 231.9 179 59.8
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 7.1e-58 229.6 213 53.5
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 1.2e-57 228.8 174 60.9
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 1.2e-57 228.8 221 53.4
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 1.6e-57 228.4 180 61.7
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.7e-57 227.6 213 52.6
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 7.9e-57 226.1 213 52.6
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 1.3e-56 225.3 183 56.3
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 6.7e-56 223.0 225 56.4
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 1.5e-55 221.9 180 58.3
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 3.3e-55 220.7 219 52.1
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 2.1e-54 218.0 190 57.9
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 3.4e-52 210.7 232 47.8
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.9e-51 207.6 212 50.5
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 3.8e-51 207.2 168 60.1
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 3.8e-51 207.2 196 49.0
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 8.5e-51 206.1 210 51.0
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 4.2e-50 203.8 215 48.8
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 1.6e-49 201.8 206 51.9
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 3.6e-49 200.7 170 54.7
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 4.6e-49 200.3 168 57.1
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 1.3e-48 198.7 220 46.4
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 1.8e-48 198.4 156 60.3
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 3.0e-48 197.6 200 51.0
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 1.5e-47 195.3 219 47.5
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 7.4e-47 193.0 222 50.0
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 9.7e-47 192.6 182 53.8
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 2.2e-46 191.4 167 54.5
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 1.1e-45 189.1 168 53.0
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 2.4e-45 188.0 199 50.3
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 2.4e-45 188.0 140 66.4
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 1.2e-44 185.7 204 47.5
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 2.6e-44 184.5 231 47.6
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 3.4e-44 184.1 207 48.8
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 5.9e-44 183.3 199 49.2
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 1.0e-43 182.6 224 47.3
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 1.7e-43 181.8 221 46.2
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 1.1e-42 179.1 187 50.3
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 4.2e-42 177.2 199 48.2
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 5.5e-42 176.8 210 47.1
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 1.2e-41 175.6 175 53.7
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 1.2e-41 175.6 173 52.0
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 2.1e-41 174.9 175 53.7
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 2.7e-41 174.5 204 48.0
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 2.7e-41 174.5 204 48.0
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 7.9e-41 172.9 177 52.0
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 1.0e-40 172.6 230 44.3
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 2.3e-40 171.4 130 63.8
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 8.8e-40 169.5 173 49.7
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 1.1e-39 169.1 175 52.0
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 1.5e-39 168.7 225 46.2
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 2.2e-38 164.9 189 47.6
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 1.4e-37 162.2 131 61.1
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 1.4e-37 162.2 222 44.1
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 3.1e-37 161.0 191 44.0
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 3.1e-37 161.0 212 40.6
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 4.1e-37 160.6 182 47.8
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 2.0e-36 158.3 129 56.6
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 2.6e-36 157.9 148 50.7
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 3.4e-36 157.5 177 48.0
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 5.9e-36 156.8 148 51.4
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 5.9e-36 156.8 177 48.0
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 1.0e-35 156.0 226 38.9
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 1.3e-35 155.6 195 44.1
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 1.4e-34 152.1 206 43.7
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 1.2e-33 149.1 121 62.0
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 1.8e-32 145.2 162 49.4
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 1.1e-31 142.5 232 40.9
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 2.0e-31 141.7 175 44.0
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 1.8e-29 135.2 173 47.4
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 2.4e-29 134.8 173 42.8
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 2.0e-28 131.7 177 42.9
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 4.5e-28 130.6 160 44.4
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 7.7e-28 129.8 94 68.1
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 2.2e-27 128.3 111 55.9
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 5.0e-27 127.1 108 54.6
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 1.5e-26 125.6 94 83.0
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 1.9e-26 125.2 92 83.7
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 3.6e-25 120.9 86 87.2
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 8.0e-25 119.8 86 86.0
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 1.0e-24 119.4 84 88.1
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 2.0e-23 115.2 82 65.9
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 4.1e-21 107.5 76 63.2
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 5.3e-21 107.1 84 63.1
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 3.5e-20 104.4 94 56.4
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 2.9e-19 101.3 87 65.5
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 8.5e-19 99.8 85 57.6
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 2.7e-17 94.7 103 51.5
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 1.1e-10 72.8 59 62.7
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 2.5e-10 71.6 87 60.9
ECA238G2420 Erigeron canadensis HOM05D006596 ORTHO05D008497 3.2e-10 71.2 91 38.5
MD09G1090900 Malus domestica HOM05D007208 ORTHO05D009090 4.2e-10 70.9 44 68.2
MD12G1044100 Malus domestica HOM05D006596 ORTHO05D008497 1.6e-09 68.9 91 36.3
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 8.0e-09 66.6 57 59.6
MSTRG.989 Avicennia marina HOM05D006596 ORTHO05D008497 8.8e-08 63.2 92 32.6
Glyma.02G192800 Glycine max HOM05D006596 ORTHO05D008497 1.2e-07 62.8 119 30.3
Oeu049215.1 Olea europaea HOM05D006895 ORTHO05D008605 2.6e-07 61.6 117 34.2
SEGI_12141 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 2.6e-07 61.6 109 27.5
VMungo0720G1474 Vigna mungo HOM05D006596 ORTHO05D008497 2.6e-07 61.6 115 27.8
Phvul.007G266200 Phaseolus vulgaris HOM05D006596 ORTHO05D008497 3.4e-07 61.2 140 25.0
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 7.5e-07 60.1 125 34.4
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 7.5e-07 60.1 125 34.4
RcHm_v2.0_Chr3g0476881 Rosa chinensis HOM05D006596 ORTHO05D008497 7.5e-07 60.1 93 36.6
CARHR279810 Cardamine hirsuta HOM05D000424 ORTHO05D000355 9.8e-07 59.7 91 33.0
Nitab4.5_0009788g0010 Nicotiana tabacum HOM05D006596 ORTHO05D008497 9.8e-07 59.7 116 25.9
SGA_v2.0_scaffold31G12566 Striga asiatica HOM05D007128 ORTHO05D009059 1.3e-06 59.3 182 26.9
DCAR_009464 Daucus carota HOM05D000104 ORTHO05D009920 1.7e-06 58.9 133 29.3
FvH4_4g11500 Fragaria vesca HOM05D007128 ORTHO05D009059 1.7e-06 58.9 200 29.0
QL09p032800 Quercus lobata HOM05D000424 ORTHO05D000355 1.7e-06 58.9 160 25.6
Sabra07G0100100 Salix brachista HOM05D007128 ORTHO05D009059 1.7e-06 58.9 118 34.7
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 1.7e-06 58.9 134 29.9
Mapoly0001s0500 Marchantia polymorpha HOM05D043813 ORTHO05D009264 2.2e-06 58.5 120 30.8
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 2.2e-06 58.5 111 27.9
FAN02G0500 Fragaria x ananassa HOM05D006596 ORTHO05D008497 2.8e-06 58.2 121 33.1
Potri.007G123600 Populus trichocarpa HOM05D007128 ORTHO05D009059 2.8e-06 58.2 118 34.7
QL09p032747 Quercus lobata HOM05D000424 ORTHO05D000355 2.8e-06 58.2 160 25.6
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 2.8e-06 58.2 91 33.0
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 3.7e-06 57.8 143 31.5
AUR62012820 Chenopodium quinoa HOM05D002737 ORTHO05D009499 4.9e-06 57.4 93 32.3
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 4.9e-06 57.4 91 31.9
QL05p028340 Quercus lobata HOM05D000424 ORTHO05D000355 4.9e-06 57.4 172 23.3
Thecc.04G235900 Theobroma cacao HOM05D000424 ORTHO05D000355 4.9e-06 57.4 85 29.4
CiPaw.11G057900 Carya illinoinensis HOM05D006464 ORTHO05D007923 6.3e-06 57.0 169 25.4
Manes.12G118100 Manihot esculenta HOM05D000424 ORTHO05D000355 6.3e-06 57.0 91 33.0
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 6.3e-06 57.0 129 24.0
COL.COLO4_37708 Corchorus olitorius HOM05D002737 ORTHO05D009499 8.3e-06 56.6 93 31.2
Dinv26965 Davidia involucrata HOM05D000424 ORTHO05D000355 8.3e-06 56.6 91 31.9
Migut.L00219 Erythranthe guttata HOM05D000424 ORTHO05D000355 8.3e-06 56.6 91 31.9
FvH4_6g20810 Fragaria vesca HOM05D006596 ORTHO05D008497 8.3e-06 56.6 121 30.6
FAN14G5569 Fragaria x ananassa HOM05D006596 ORTHO05D008497 8.3e-06 56.6 121 30.6


User provided reference genes

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