Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 6.0e-161 570.9 302 100.0
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 7.8e-52 208.4 318 47.8
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.2e-49 201.1 321 47.0
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 3.6e-49 199.5 319 48.0
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 8.9e-48 194.9 326 45.4
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 1.3e-46 191.0 328 45.1
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 1.7e-46 190.7 322 46.3
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 9.0e-40 168.3 276 50.7
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 9.9e-39 164.9 325 43.1
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 4.2e-37 159.5 264 46.6
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 5.4e-37 159.1 325 42.5
Solyc01g106180.3 Solanum lycopersicum HOM05D009304 ORTHO05D003109 4.0e-32 142.9 183 49.2
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 5.3e-32 142.5 266 44.0
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 6.9e-32 142.1 261 44.8
CAN.G996.13 Capsicum annuum HOM05D009304 ORTHO05D003109 1.9e-29 134.0 309 40.1
Sopen12g021050 Solanum pennellii HOM05D009304 ORTHO05D003109 5.5e-29 132.5 183 48.6
Oeu025512.1 Olea europaea HOM05D009304 ORTHO05D003109 6.0e-28 129.0 313 39.6
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 2.3e-27 127.1 306 41.2
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 3.0e-27 126.7 323 39.6
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 5.1e-27 125.9 349 37.2
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 1.1e-26 124.8 327 39.4
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 2.8e-25 120.2 332 39.5
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 3.7e-25 119.8 329 38.0
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 8.1e-25 118.6 295 38.6
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 5.8e-23 112.5 329 38.0
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 3.8e-22 109.8 340 35.6
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 4.9e-22 109.4 328 36.6
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 6.5e-22 109.0 310 37.1
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 1.4e-21 107.8 323 35.0
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.5e-21 107.1 347 37.2
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 3.2e-21 106.7 281 37.7
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 1.2e-20 104.8 346 35.0
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 2.7e-20 103.6 285 36.8
Hma1.2p1_0280F.1_g112760 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 2.7e-20 103.6 198 43.9
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.7e-20 103.6 264 37.1
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 2.7e-20 103.6 315 37.1
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 4.6e-20 102.8 337 36.5
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 1.3e-19 101.3 322 38.5
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 3.9e-19 99.8 328 33.8
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 5.1e-19 99.4 305 38.7
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 6.7e-19 99.0 308 35.4
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 1.1e-18 98.2 315 36.5
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 2.5e-18 97.1 326 37.1
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 3.3e-18 96.7 338 32.8
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 4.3e-18 96.3 342 36.0
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 4.3e-18 96.3 250 38.0
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 5.7e-18 95.9 307 35.8
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 7.4e-18 95.5 316 36.1
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 7.4e-18 95.5 313 36.4
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 7.4e-18 95.5 312 35.6
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 9.6e-18 95.1 314 36.3
Actinidia09882 Actinidia chinensis HOM05D009304 ORTHO05D003109 2.8e-17 93.6 309 35.3
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 3.7e-17 93.2 317 35.6
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 3.7e-17 93.2 317 35.6
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 6.3e-17 92.4 321 35.2
MSTRG.14193 Avicennia marina HOM05D033380 ORTHO05D026975 3.1e-16 90.1 305 34.8
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 3.1e-16 90.1 324 33.6
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 5.3e-16 89.4 323 34.7
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 5.3e-16 89.4 308 36.7
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 9.0e-16 88.6 321 33.0
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.5e-15 87.8 346 32.4
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 1.5e-15 87.8 295 36.9
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.5e-15 87.8 349 33.0
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 2.0e-15 87.4 341 34.6
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 2.6e-15 87.0 345 33.6
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.6e-15 87.0 322 33.2
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 3.4e-15 86.7 323 35.0
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 3.4e-15 86.7 309 36.9
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 5.9e-15 85.9 306 34.0
Migut.H01045 Erythranthe guttata HOM05D009304 ORTHO05D026975 5.9e-15 85.9 310 34.2
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 5.9e-15 85.9 327 33.6
FAN05G0655 Fragaria x ananassa HOM05D010652 ORTHO05D003109 7.6e-15 85.5 337 34.7
FAN05G4761 Fragaria x ananassa HOM05D010652 ORTHO05D003109 7.6e-15 85.5 337 34.7
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 1.0e-14 85.1 319 33.9
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 1.3e-14 84.7 311 36.0
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 1.7e-14 84.3 320 35.0
ECA234G0694 Erigeron canadensis HOM05D009304 ORTHO05D003109 2.2e-14 84.0 322 34.2
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 2.2e-14 84.0 348 31.9
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 8.4e-14 82.0 283 37.1
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 8.4e-14 82.0 211 39.3
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 8.4e-14 82.0 282 31.9
Solyc11g043180.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 8.4e-14 82.0 115 47.8
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.1e-13 81.6 341 35.5
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 1.1e-13 81.6 280 36.8
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 1.4e-13 81.3 332 31.9
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.4e-13 81.3 321 34.9
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 1.4e-13 81.3 338 31.1
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 1.4e-13 81.3 337 31.5
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 1.4e-13 81.3 344 36.9
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.4e-13 81.3 323 35.6
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.4e-13 81.3 323 35.6
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 1.9e-13 80.9 312 34.9
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 1.9e-13 80.9 307 33.9
Solyc08g045770.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.5e-13 80.5 115 47.8
Solyc09g082960.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.5e-13 80.5 82 58.5
Glyma.13G299800 Glycine max HOM05D010177 ORTHO05D003109 4.2e-13 79.7 313 35.1
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 4.2e-13 79.7 328 32.6
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 4.2e-13 79.7 343 35.9
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 7.2e-13 79.0 320 36.2
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 9.3e-13 78.6 322 33.2
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 1.2e-12 78.2 318 35.2
Solyc04g007740.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.2e-12 78.2 115 47.0
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 1.6e-12 77.8 329 31.6
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.6e-12 77.8 323 35.3
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 2.1e-12 77.4 311 35.0
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 2.1e-12 77.4 311 35.0
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 2.1e-12 77.4 311 33.8
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.1e-12 77.4 312 35.3
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.1e-12 77.4 316 34.2
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 2.1e-12 77.4 316 34.8
Lsat_1_v5_gn_8_132261 Lactuca sativa HOM05D009304 ORTHO05D003109 2.1e-12 77.4 331 34.7
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 2.7e-12 77.0 306 32.4
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 3.5e-12 76.6 318 34.0
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 3.5e-12 76.6 354 34.7
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 4.6e-12 76.3 328 33.5
Phvul.011G112800 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 7.9e-12 75.5 327 30.9
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 1.0e-11 75.1 317 35.3
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 1.3e-11 74.7 329 31.6
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 1.3e-11 74.7 312 34.3
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.8e-11 74.3 327 33.3
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.0e-11 73.6 316 33.2
VMungo1127G1338 Vigna mungo HOM05D010177 ORTHO05D003109 3.0e-11 73.6 337 30.9
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 8.7e-11 72.0 343 30.6
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 1.1e-10 71.6 283 32.2
Lalb_Chr14g0366711 Lupinus albus HOM05D010177 ORTHO05D003109 1.1e-10 71.6 324 32.1
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.5e-10 71.2 326 31.3
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.9e-10 70.9 320 31.9
Lalb_Chr22g0356441 Lupinus albus HOM05D010177 ORTHO05D003109 1.9e-10 70.9 324 32.1
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 2.5e-10 70.5 291 30.2
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 3.3e-10 70.1 310 31.3
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 4.3e-10 69.7 331 32.9
Medtr2g090150 Medicago truncatula HOM05D010177 ORTHO05D003109 1.6e-09 67.8 337 32.0
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 2.2e-09 67.4 322 34.2
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 2.2e-09 67.4 346 34.4
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 2.8e-09 67.0 309 31.4
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 3.7e-09 66.6 319 32.3
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 3.7e-09 66.6 305 32.1
Ca_01527_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 4.8e-09 66.2 318 32.7
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 6.3e-09 65.9 324 32.7
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 6.3e-09 65.9 296 31.8
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 6.3e-09 65.9 307 30.0
PGR142G1157 Punica granatum HOM05D010652 ORTHO05D003109 6.3e-09 65.9 306 32.4
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 8.2e-09 65.5 349 29.5
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 8.2e-09 65.5 307 30.9
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 1.1e-08 65.1 308 31.5
Medtr4g046123 Medicago truncatula HOM05D010177 ORTHO05D003109 1.4e-08 64.7 226 36.7
Lj4g0026214 Lotus japonicus HOM05D004441 ORTHO05D003109 1.8e-08 64.3 315 28.3
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 2.4e-08 63.9 328 30.5
Thhalv10026095m.g Eutrema salsugineum HOM05D012054 ORTHO05D013946 3.1e-08 63.5 316 32.9
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 5.3e-08 62.8 311 32.5
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 6.9e-08 62.4 330 32.1
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 1.2e-07 61.6 234 34.2
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 1.2e-07 61.6 326 30.7
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 1.5e-07 61.2 318 32.4
Aa31LG11G1710 Aethionema arabicum HOM05D012054 ORTHO05D013946 2.0e-07 60.8 321 31.5
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 3.4e-07 60.1 329 31.3
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 7.7e-07 58.9 322 31.4
SGA_v2.0_scaffold100G29660 Striga asiatica HOM05D004441 ORTHO05D003109 7.7e-07 58.9 258 33.7
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 1.0e-06 58.5 308 30.8
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 1.3e-06 58.2 307 30.3
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 1.3e-06 58.2 311 32.8
TPR.G21670 Trifolium pratense HOM05D010177 ORTHO05D003109 1.3e-06 58.2 93 46.2
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.7e-06 57.8 336 33.0
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 1.7e-06 57.8 305 31.1
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 2.2e-06 57.4 336 31.2


User provided reference genes

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