Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g06590 Coffea canephora HOM05D005758 ORTHO05D029051 3.1e-69 265.0 135 100.0
Cc06_g16080 Coffea canephora HOM05D005758 ORTHO05D029051 9.9e-23 110.5 76 77.6
Cc04_g14920 Coffea canephora HOM05D005758 ORTHO05D007218 4.8e-17 91.7 78 67.9
Solyc05g026140.4 Solanum lycopersicum HOM05D005758 ORTHO05D007218 6.2e-17 91.3 78 64.1
Sopen05g022350 Solanum pennellii HOM05D005758 ORTHO05D007218 6.2e-17 91.3 78 64.1
Nitab4.5_0000206g0090 Nicotiana tabacum HOM05D005758 ORTHO05D007218 8.1e-17 90.9 78 65.4
PSO017G5675 Papaver somniferum HOM05D005758 ORTHO05D007218 1.1e-16 90.5 78 62.8
PSO063G6478 Papaver somniferum HOM05D005758 ORTHO05D007218 1.8e-16 89.7 78 61.5
ClCG09G007800 Citrullus lanatus HOM05D005758 ORTHO05D007218 3.1e-16 89.0 78 65.4
Ciclev10023734m.g Citrus clementina HOM05D005758 ORTHO05D007218 4.0e-16 88.6 77 63.6
MSTRG.21495 Avicennia marina HOM05D005758 ORTHO05D007218 1.2e-15 87.0 78 61.5
GSVIVG01028326001 Vitis vinifera HOM05D005758 ORTHO05D007218 1.5e-15 86.7 78 62.8
CAN.G184.8 Capsicum annuum HOM05D005758 ORTHO05D007218 2.6e-15 85.9 78 61.5
Eucgr.B01556 Eucalyptus grandis HOM05D005758 ORTHO05D007218 2.6e-15 85.9 77 61.0
vmacro02660 Vaccinium macrocarpon HOM05D005758 ORTHO05D007218 2.6e-15 85.9 85 58.8
MELO3C015730.2 Cucumis melo HOM05D005758 ORTHO05D007218 3.4e-15 85.5 78 61.5
Potri.005G224000 Populus trichocarpa HOM05D005758 ORTHO05D007218 3.4e-15 85.5 78 61.5
Atru.chr5.1673 Acer truncatum HOM05D005758 ORTHO05D007218 4.5e-15 85.1 77 61.0
CANSAT35G0929 Cannabis sativa HOM05D005758 ORTHO05D007218 5.8e-15 84.7 78 64.1
TAR365G0290 Trochodendron aralioides HOM05D005758 ORTHO05D007218 5.8e-15 84.7 78 60.3
TAR636G1025 Trochodendron aralioides HOM05D005758 ORTHO05D007218 5.8e-15 84.7 78 59.0
CSS0001414 Camellia sinensis var. sinensis HOM05D005758 ORTHO05D007218 7.6e-15 84.3 77 62.3
Manes.12G032100 Manihot esculenta HOM05D005758 ORTHO05D007218 9.9e-15 84.0 78 57.7
Peaxi162Scf00854g00219 Petunia axillaris HOM05D005758 ORTHO05D007218 9.9e-15 84.0 78 64.1
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.3e-14 83.6 77 59.7
CsaV3_7G027330 Cucumis sativus L. HOM05D005758 ORTHO05D007218 1.3e-14 83.6 78 60.3
DCAR_012547 Daucus carota HOM05D005758 ORTHO05D007218 1.3e-14 83.6 78 59.0
TWI12G1280 Tripterygium wilfordii HOM05D005758 ORTHO05D007218 1.3e-14 83.6 78 60.3
Cfa002421 Carpinus fangiana HOM05D005758 ORTHO05D007218 1.7e-14 83.2 77 59.7
Gohir.D07G219100 Gossypium hirsutum HOM05D005758 ORTHO05D007218 1.7e-14 83.2 78 59.0
Gorai.001G253600 Gossypium raimondii HOM05D005758 ORTHO05D007218 1.7e-14 83.2 78 59.0
Sabra05G0172800 Salix brachista HOM05D005758 ORTHO05D007218 2.2e-14 82.8 78 59.0
Rhsim13G0034500 Rhododendron simsii HOM05D005758 ORTHO05D007218 2.9e-14 82.4 78 61.5
Sc24g0003140 Simmondsia chinensis HOM05D005758 ORTHO05D029051 2.9e-14 82.4 103 48.5
SGA_v2.0_scaffold1G00616 Striga asiatica HOM05D005758 ORTHO05D007218 2.9e-14 82.4 78 57.7
CiPaw.13G172300 Carya illinoinensis HOM05D005758 ORTHO05D007218 4.9e-14 81.6 77 59.7
PGR004G1596 Punica granatum HOM05D005758 ORTHO05D007218 4.9e-14 81.6 78 57.7
QL09p049090 Quercus lobata HOM05D005758 ORTHO05D007218 4.9e-14 81.6 78 57.7
SHI09784 Sapria himalayana HOM05D000105 ORTHO05D007218 4.9e-14 81.6 78 55.1
Thecc.01G258700 Theobroma cacao HOM05D005758 ORTHO05D007218 4.9e-14 81.6 78 57.7
Cpa.g.sc50.22 Carica papaya HOM05D005758 ORTHO05D007218 6.4e-14 81.3 78 56.4
Duzib133G0949 Durio zibethinus HOM05D005758 ORTHO05D007218 6.4e-14 81.3 78 57.7
Gohir.A07G213000 Gossypium hirsutum HOM05D005758 ORTHO05D007218 8.4e-14 80.9 78 57.7
Ah.11g049730 Amaranthus hybridus HOM05D005758 ORTHO05D007218 1.4e-13 80.1 78 55.1
AL4G26390 Arabidopsis lyrata HOM05D005758 ORTHO05D007218 1.4e-13 80.1 77 58.4
AT2G31190 Arabidopsis thaliana HOM05D005758 ORTHO05D007218 1.4e-13 80.1 77 58.4
Migut.D00424 Erythranthe guttata HOM05D005758 ORTHO05D007218 1.9e-13 79.7 78 57.7
HanXRQChr09g0254391 Helianthus annuus HOM05D005758 ORTHO05D007218 1.9e-13 79.7 77 55.8
Lsat_1_v5_gn_8_93000 Lactuca sativa HOM05D005758 ORTHO05D007218 1.9e-13 79.7 78 55.1
Sed0010920 Sechium edule HOM05D005758 ORTHO05D007218 1.9e-13 79.7 78 59.0
THA.LOC104800871 Tarenaya hassleriana HOM05D005758 ORTHO05D007218 1.9e-13 79.7 77 57.1
Sp4g13680 Schrenkiella parvula HOM05D005758 ORTHO05D007218 2.4e-13 79.3 77 57.1
Aa31LG5G5730 Aethionema arabicum HOM05D005758 ORTHO05D007218 3.2e-13 79.0 77 57.1
arahy.Tifrunner.gnm1.ann1.6W8MXB Arachis hypogaea HOM05D005758 ORTHO05D007218 3.2e-13 79.0 77 59.7
arahy.Tifrunner.gnm1.ann1.N9I7Q3 Arachis hypogaea HOM05D005758 ORTHO05D007218 3.2e-13 79.0 77 59.7
Duzib138G0621 Durio zibethinus HOM05D005758 ORTHO05D007218 3.2e-13 79.0 78 56.4
QL09p038696 Quercus lobata HOM05D005758 ORTHO05D007218 3.2e-13 79.0 77 57.1
Nn3g19650 Nelumbo nucifera HOM05D005758 ORTHO05D007218 4.2e-13 78.6 82 54.9
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 7.1e-13 77.8 78 55.1
AUR62024718 Chenopodium quinoa HOM05D005758 ORTHO05D007218 7.1e-13 77.8 78 55.1
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 9.3e-13 77.4 78 55.1
ECA236G3842 Erigeron canadensis HOM05D005758 ORTHO05D007218 9.3e-13 77.4 77 53.2
ECA248G1569 Erigeron canadensis HOM05D005758 ORTHO05D007218 1.2e-12 77.0 77 53.2
MBI07_g30496_MAGBIO Magnolia biondii HOM05D005758 ORTHO05D007218 1.6e-12 76.6 78 55.1
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 2.1e-12 76.3 78 56.4
FAN24G1897 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.1e-12 76.3 78 56.4
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.1e-12 76.3 78 56.4
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.7e-12 75.9 78 56.4
BcaB06g28429 Brassica carinata HOM05D005758 ORTHO05D007218 3.5e-12 75.5 77 54.5
A04p24020 Brassica napus HOM05D005758 ORTHO05D007218 3.5e-12 75.5 77 54.5
BraA04t17923Z Brassica rapa HOM05D005758 ORTHO05D007218 3.5e-12 75.5 77 54.5
Carub.0004s1247 Capsella rubella HOM05D005758 ORTHO05D007218 3.5e-12 75.5 74 56.8
Lalb_Chr02g0152411 Lupinus albus HOM05D005758 ORTHO05D007218 3.5e-12 75.5 73 58.9
RcHm_v2.0_Chr6g0288161 Rosa chinensis HOM05D005758 ORTHO05D007218 3.5e-12 75.5 78 56.4
Lsat_1_v5_gn_5_183400 Lactuca sativa HOM05D005758 ORTHO05D007218 4.6e-12 75.1 77 51.9
Hund09599 Selenicereus undatus HOM05D005758 ORTHO05D007218 4.6e-12 75.1 78 56.4
HanXRQChr04g0112661 Helianthus annuus HOM05D005758 ORTHO05D007218 6.0e-12 74.7 77 51.9
EL10Ac5g10402 Beta vulgaris HOM05D005758 ORTHO05D007218 7.9e-12 74.3 78 52.6
Aqoxy2G03640 Aquilegia oxysepala HOM05D005758 ORTHO05D007218 1.0e-11 73.9 78 53.8
BcaB06g28512 Brassica carinata HOM05D005758 ORTHO05D007218 1.0e-11 73.9 77 53.2
C04p60690 Brassica napus HOM05D005758 ORTHO05D007218 1.0e-11 73.9 77 53.2
BolC4t27558H Brassica oleracea HOM05D005758 ORTHO05D007218 1.0e-11 73.9 77 53.2
Thhalv10016683m.g Eutrema salsugineum HOM05D005758 ORTHO05D007218 1.0e-11 73.9 77 53.2
Glyma.03G163000 Glycine max HOM05D005758 ORTHO05D007218 1.0e-11 73.9 77 55.8
Glyma.13G123400 Glycine max HOM05D005758 ORTHO05D007218 1.3e-11 73.6 77 54.5
MD10G1184300 Malus domestica HOM05D005758 ORTHO05D007218 1.8e-11 73.2 78 56.4
Phvul.001G160800 Phaseolus vulgaris HOM05D005758 ORTHO05D007218 2.3e-11 72.8 77 55.8
Glyma.19G164500 Glycine max HOM05D005758 ORTHO05D007218 3.0e-11 72.4 77 55.8
Prupe.8G224000 Prunus persica HOM05D005758 ORTHO05D007218 5.1e-11 71.6 78 52.6
Psat3g057680 Pisum sativum HOM05D005758 ORTHO05D007218 8.7e-11 70.9 83 51.8
TPR.G28632 Trifolium pratense HOM05D005758 ORTHO05D007218 1.1e-10 70.5 83 51.8
CDE03G0270 Ceratophyllum demersum HOM05D005758 ORTHO05D007218 1.9e-10 69.7 78 51.3
Phvul.007G193000 Phaseolus vulgaris HOM05D005758 ORTHO05D007218 1.9e-10 69.7 73 54.8
VMungo0720G1063 Vigna mungo HOM05D005758 ORTHO05D007218 2.5e-10 69.3 73 54.8
Lsat_1_v5_gn_5_183361 Lactuca sativa HOM05D005758 ORTHO05D007218 5.6e-10 68.2 77 46.8
ATR0736G118 Amborella trichopoda HOM05D005758 ORTHO05D007218 7.4e-10 67.8 78 51.3
Lj5g0021558 Lotus japonicus HOM05D005758 ORTHO05D007218 7.4e-10 67.8 73 53.4
Medtr7g096920 Medicago truncatula HOM05D005758 ORTHO05D007218 7.4e-10 67.8 83 51.8
VMungo1383G3618 Vigna mungo HOM05D005758 ORTHO05D007218 7.4e-10 67.8 77 51.9
Ca_08672_v3 Cicer arietinum L. HOM05D005758 ORTHO05D007218 2.8e-09 65.9 83 49.4
Lj1g0005369 Lotus japonicus HOM05D005758 ORTHO05D007218 2.8e-09 65.9 73 53.4
MBI10_g29590_MAGBIO Magnolia biondii HOM05D005758 ORTHO05D007218 3.7e-09 65.5 61 59.0
Lj1A66G58 Lonicera japonica HOM05D005758 ORTHO05D007218 4.8e-09 65.1 57 57.9
HPP92_026239 Vanilla planifolia HOM05D005758 ORTHO05D007218 6.2e-09 64.7 78 50.0
MD05G1197700 Malus domestica HOM05D005758 ORTHO05D007218 1.2e-07 60.5 79 50.6
Os04g0517300 Oryza sativa ssp. japonica HOM05D005758 ORTHO05D007218 4.5e-07 58.5 84 41.7
SEGI_10356 Sequoiadendron giganteum HOM05D005758 ORTHO05D007218 5.8e-07 58.2 57 54.4
Zm00001eb077710 Zea mays HOM05D005758 ORTHO05D007218 5.8e-07 58.2 81 44.4
Zm00001eb077720 Zea mays HOM05D005758 ORTHO05D007218 2.9e-06 55.8 81 43.2


User provided reference genes

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