Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g06460 Coffea canephora HOM05D007748 ORTHO05D009345 7.4e-304 1046.6 603 100.0
TAR627G0547 Trochodendron aralioides HOM05D007748 ORTHO05D009345 3.2e-28 131.0 357 37.8
TAR627G0096 Trochodendron aralioides HOM05D007748 ORTHO05D009345 2.1e-27 128.3 380 36.8
Hma1.2p1_0565F.1_g179400 Hydrangea macrophylla HOM05D007748 ORTHO05D009345 9.5e-25 119.4 628 26.1
Thecc.02G172800 Theobroma cacao HOM05D007748 ORTHO05D009345 3.6e-24 117.5 626 30.5
PSO675G9319 Papaver somniferum HOM05D007748 ORTHO05D009345 6.2e-24 116.7 359 32.9
Nitab4.5_0005244g0030 Nicotiana tabacum HOM05D012354 ORTHO05D009345 1.8e-23 115.2 638 28.4
Prupe.3G232500 Prunus persica HOM05D007748 ORTHO05D009345 2.3e-23 114.8 342 31.6
Dinv23701 Davidia involucrata HOM05D007748 ORTHO05D009345 3.1e-23 114.4 553 30.6
CiPaw.03G170600 Carya illinoinensis HOM05D007748 ORTHO05D009345 4.0e-23 114.0 274 33.9
PSO541G5470 Papaver somniferum HOM05D007748 ORTHO05D009345 2.0e-22 111.7 354 31.6
QL08p037531 Quercus lobata HOM05D007748 ORTHO05D009345 2.6e-22 111.3 510 32.5
COL.COLO4_13689 Corchorus olitorius HOM05D007748 ORTHO05D009345 1.7e-21 108.6 581 31.2
Atru.chr6.3057 Acer truncatum HOM05D007748 ORTHO05D009345 4.9e-21 107.1 345 32.8
Cfa014551 Carpinus fangiana HOM05D007748 ORTHO05D009345 4.1e-20 104.0 362 36.7
RcHm_v2.0_Chr2g0162021 Rosa chinensis HOM05D007748 ORTHO05D009345 9.2e-20 102.8 289 30.8
Actinidia09898 Actinidia chinensis HOM05D007748 ORTHO05D009345 1.7e-18 98.6 479 30.1
FAN09G1549 Fragaria x ananassa HOM05D007748 ORTHO05D009345 1.7e-18 98.6 298 31.2
Gohir.D02G182800 Gossypium hirsutum HOM05D007748 ORTHO05D009345 3.9e-18 97.4 562 28.6
Actinidia12452 Actinidia chinensis HOM05D007748 ORTHO05D009345 8.6e-18 96.3 325 35.4
FAN05G3025 Fragaria x ananassa HOM05D007748 ORTHO05D009345 1.1e-17 95.9 299 31.1
TWI18G1232 Tripterygium wilfordii HOM05D007748 ORTHO05D009345 1.1e-17 95.9 606 31.0
FvH4_6g44840 Fragaria vesca HOM05D007748 ORTHO05D009345 1.9e-17 95.1 293 30.7
Sopen12g001510 Solanum pennellii HOM05D012354 ORTHO05D009345 3.3e-17 94.4 608 27.8
FAN14G2142 Fragaria x ananassa HOM05D007748 ORTHO05D009345 5.6e-17 93.6 293 30.4
Solyc12g005560.1 Solanum lycopersicum HOM05D012354 ORTHO05D009345 1.2e-16 92.4 609 27.6
Aqoxy1G02767 Aquilegia oxysepala HOM05D007748 ORTHO05D009345 1.1e-15 89.4 357 27.2
Duzib052G0236 Durio zibethinus HOM05D007748 ORTHO05D009345 1.4e-15 89.0 595 30.1
Potri.019G109200 Populus trichocarpa HOM05D007748 ORTHO05D009345 1.4e-15 89.0 591 30.1
Peaxi162Scf00485g00412 Petunia axillaris HOM05D012354 ORTHO05D009345 4.0e-15 87.4 612 29.6
Gohir.A03G159700 Gossypium hirsutum HOM05D007748 ORTHO05D009345 5.2e-15 87.0 585 29.4
Manes.13G151000 Manihot esculenta HOM05D007748 ORTHO05D009345 2.0e-14 85.1 610 25.1
HanXRQChr15g0480361 Helianthus annuus HOM05D007748 ORTHO05D009345 2.6e-14 84.7 167 32.9
Peaxi162Scf00132g00079 Petunia axillaris HOM05D012354 ORTHO05D009345 7.6e-14 83.2 651 28.3
Ciclev10018063m.g Citrus clementina HOM05D007748 ORTHO05D009345 1.3e-13 82.4 462 25.3
Potri.013G145900 Populus trichocarpa HOM05D007748 ORTHO05D009345 1.3e-13 82.4 618 29.6
CsaV3_6G012500 Cucumis sativus L. HOM05D007748 ORTHO05D009345 4.2e-12 77.4 288 27.4
ClCG02G017390 Citrullus lanatus HOM05D007748 ORTHO05D009345 9.3e-12 76.3 286 26.9
MELO3C013526.2 Cucumis melo HOM05D007748 ORTHO05D009345 1.2e-11 75.9 276 28.6
ECA246G0851 Erigeron canadensis HOM05D007748 ORTHO05D009345 3.5e-11 74.3 165 34.5
Haze_13098 Corylus avellana HOM05D007748 ORTHO05D009345 1.0e-10 72.8 377 33.7
Gorai.005G205200 Gossypium raimondii HOM05D007748 ORTHO05D009345 1.0e-10 72.8 562 28.8
PGR142G1582 Punica granatum HOM05D007748 ORTHO05D009345 1.7e-10 72.0 132 36.4
Lsat_1_v5_gn_3_39541 Lactuca sativa HOM05D007748 ORTHO05D009345 3.0e-10 71.2 163 32.5
arahy.Tifrunner.gnm1.ann1.MF6V35 Arachis hypogaea HOM05D007748 ORTHO05D009345 1.5e-09 68.9 62 58.1
PGR142G3499 Punica granatum HOM05D007748 ORTHO05D009345 1.9e-09 68.6 239 32.6
Gorai.013G074100 Gossypium raimondii HOM05D007748 ORTHO05D009345 2.5e-09 68.2 384 26.3
Lalb_Chr19g0135431 Lupinus albus HOM05D007748 ORTHO05D009345 3.3e-09 67.8 62 56.5
VMungo1127G2014 Vigna mungo HOM05D007748 ORTHO05D009345 3.3e-09 67.8 270 29.6
arahy.Tifrunner.gnm1.ann1.5P5A6I Arachis hypogaea HOM05D007748 ORTHO05D009345 4.3e-09 67.4 469 23.5
Nn1g03923 Nelumbo nucifera HOM05D007748 ORTHO05D009345 5.6e-09 67.0 658 25.2
CAN.G980.12 Capsicum annuum HOM05D012354 ORTHO05D009345 1.3e-08 65.9 355 25.4
Eucgr.K00931 Eucalyptus grandis HOM05D007748 ORTHO05D009345 1.3e-08 65.9 616 23.7
arahy.Tifrunner.gnm1.ann1.2C7EMU Arachis hypogaea HOM05D007748 ORTHO05D009345 1.6e-08 65.5 54 61.1
Ca_20695_v3 Cicer arietinum L. HOM05D007748 ORTHO05D009345 1.6e-08 65.5 348 27.9
AUR62037378 Chenopodium quinoa HOM05D007748 ORTHO05D009345 8.1e-08 63.2 206 41.3
Nitab4.5_0004216g0060 Nicotiana tabacum HOM05D012354 ORTHO05D009345 2.4e-07 61.6 598 26.1
AUR62038940 Chenopodium quinoa HOM05D007748 ORTHO05D009345 1.5e-06 58.9 284 34.9
Os04g0636200 Oryza sativa ssp. japonica HOM05D007748 ORTHO05D009345 1.5e-06 58.9 178 25.8
Lalb_Chr03g0029211 Lupinus albus HOM05D007748 ORTHO05D009345 3.4e-06 57.8 345 32.8
Sc21g0002430 Simmondsia chinensis HOM05D007748 ORTHO05D009345 3.4e-06 57.8 340 30.9
PGSC0003DMG400046623 Solanum tuberosum HOM05D012354 ORTHO05D009345 4.5e-06 57.4 608 26.8
Gohir.D13G065125 Gossypium hirsutum HOM05D007748 ORTHO05D009345 7.6e-06 56.6 432 25.2
GSVIVG01030576001 Vitis vinifera HOM05D007748 ORTHO05D009345 7.6e-06 56.6 515 24.3
arahy.Tifrunner.gnm1.ann1.SX3Q91 Arachis hypogaea HOM05D007748 ORTHO05D009345 9.9e-06 56.2 463 23.5


User provided reference genes

Program Settings