Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g06400 Coffea canephora HOM05D006260 ORTHO05D007860 1.5e-87 326.2 174 100.0
ClCG06G013810 Citrullus lanatus HOM05D006260 ORTHO05D007860 2.7e-73 278.9 177 83.1
Oeu043898.1 Olea europaea HOM05D006260 ORTHO05D007860 1.5e-71 273.1 179 81.0
MELO3C017413.2 Cucumis melo HOM05D006260 ORTHO05D007860 2.5e-71 272.3 177 80.8
CsaV3_1G032030 Cucumis sativus L. HOM05D006260 ORTHO05D007860 3.3e-71 271.9 177 80.8
Atru.chr7.896 Acer truncatum HOM05D006260 ORTHO05D007860 5.7e-71 271.2 174 81.0
Ciclev10009690m.g Citrus clementina HOM05D006260 ORTHO05D007860 5.7e-71 271.2 174 80.5
COL.COLO4_14462 Corchorus olitorius HOM05D006260 ORTHO05D007860 1.3e-70 270.0 176 80.1
Solyc05g006080.1 Solanum lycopersicum HOM05D006260 ORTHO05D007860 1.3e-70 270.0 179 81.0
Sopen05g002100 Solanum pennellii HOM05D006260 ORTHO05D007860 1.3e-70 270.0 179 81.0
Potri.018G139600 Populus trichocarpa HOM05D006260 ORTHO05D007860 6.3e-70 267.7 177 78.5
SalBow3G0163 Salvia bowleyana HOM05D006260 ORTHO05D007860 6.3e-70 267.7 164 83.5
CAN.G1341.6 Capsicum annuum HOM05D006260 ORTHO05D007860 8.2e-70 267.3 175 79.4
TWI63G0540 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 8.2e-70 267.3 174 79.9
Lj5A659T18 Lonicera japonica HOM05D006260 ORTHO05D007860 1.1e-69 266.9 176 81.2
Sed0022699 Sechium edule HOM05D006260 ORTHO05D007860 1.1e-69 266.9 178 79.2
PGSC0003DMG400015598 Solanum tuberosum HOM05D006260 ORTHO05D007860 1.1e-69 266.9 179 79.3
AL7G22380 Arabidopsis lyrata HOM05D006260 ORTHO05D007860 1.4e-69 266.5 174 78.2
Migut.J00776 Erythranthe guttata HOM05D006260 ORTHO05D007860 1.8e-69 266.2 170 82.4
MSTRG.19359 Avicennia marina HOM05D006260 ORTHO05D007860 4.1e-69 265.0 170 82.4
TWI38G0675 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 4.1e-69 265.0 174 78.7
AT4G29870 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 5.3e-69 264.6 174 78.7
CANSAT11G1813 Cannabis sativa HOM05D006260 ORTHO05D007860 5.3e-69 264.6 172 78.5
Carub.0004s1476 Capsella rubella HOM05D006260 ORTHO05D007860 9.0e-69 263.8 178 77.5
unitig_8.g4053 Utricularia gibba HOM05D006260 ORTHO05D007860 1.2e-68 263.5 159 84.9
SGA_v2.0_scaffold31G12783 Striga asiatica HOM05D006260 ORTHO05D007860 1.5e-68 263.1 164 82.9
Thecc.09G192000 Theobroma cacao HOM05D006260 ORTHO05D007860 1.5e-68 263.1 176 78.4
vmacro20799 Vaccinium macrocarpon HOM05D006260 ORTHO05D007860 2.0e-68 262.7 175 77.1
Thhalv10026375m.g Eutrema salsugineum HOM05D006260 ORTHO05D007860 2.6e-68 262.3 177 78.5
Oeu012389.1 Olea europaea HOM05D006260 ORTHO05D007860 2.6e-68 262.3 180 78.3
C01p09330 Brassica napus HOM05D006260 ORTHO05D007860 3.4e-68 261.9 174 75.3
BolC1t00921H Brassica oleracea HOM05D006260 ORTHO05D007860 3.4e-68 261.9 174 75.3
Lalb_Chr23g0276701 Lupinus albus HOM05D006260 ORTHO05D007860 3.4e-68 261.9 177 75.1
Eucgr.C00083 Eucalyptus grandis HOM05D006260 ORTHO05D007860 4.5e-68 261.5 173 78.0
Hma1.2p1_0478F.1_g161140 Hydrangea macrophylla HOM05D006260 ORTHO05D007860 5.9e-68 261.2 174 79.9
Rhsim01G0114100 Rhododendron simsii HOM05D006260 ORTHO05D007860 5.9e-68 261.2 179 76.5
Carub.0003s3356 Capsella rubella HOM05D006260 ORTHO05D007860 7.6e-68 260.8 177 79.1
CARHR237780 Cardamine hirsuta HOM05D006260 ORTHO05D007860 7.6e-68 260.8 177 78.5
Nitab4.5_0000257g0210 Nicotiana tabacum HOM05D006260 ORTHO05D007860 7.6e-68 260.8 179 78.2
CiPaw.08G031300 Carya illinoinensis HOM05D006260 ORTHO05D007860 1.3e-67 260.0 174 76.4
FvH4_4g06900 Fragaria vesca HOM05D006260 ORTHO05D007860 1.3e-67 260.0 178 77.5
Sp7g27680 Schrenkiella parvula HOM05D006260 ORTHO05D007860 1.3e-67 260.0 177 76.8
Gohir.D04G006400 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.7e-67 259.6 176 77.8
Gorai.012G007800 Gossypium raimondii HOM05D006260 ORTHO05D007860 1.7e-67 259.6 176 77.8
Lj5A667T13 Lonicera japonica HOM05D006260 ORTHO05D007860 1.7e-67 259.6 176 80.7
Haze_22050 Corylus avellana HOM05D006260 ORTHO05D007860 2.2e-67 259.2 174 75.9
A01p08290 Brassica napus HOM05D006260 ORTHO05D007860 3.8e-67 258.5 174 74.7
BraA01t00777Z Brassica rapa HOM05D006260 ORTHO05D007860 3.8e-67 258.5 174 74.7
FAN12G1915 Fragaria x ananassa HOM05D006260 ORTHO05D007860 3.8e-67 258.5 177 77.4
GSVIVG01029271001 Vitis vinifera HOM05D006260 ORTHO05D007860 3.8e-67 258.5 174 79.3
Aa31LG2G20680 Aethionema arabicum HOM05D006260 ORTHO05D007860 5.0e-67 258.1 175 76.0
Gohir.A05G409000 Gossypium hirsutum HOM05D006260 ORTHO05D007860 5.0e-67 258.1 176 76.7
Gohir.D04G006600 Gossypium hirsutum HOM05D006260 ORTHO05D007860 5.0e-67 258.1 176 76.7
Gorai.012G008000 Gossypium raimondii HOM05D006260 ORTHO05D007860 5.0e-67 258.1 176 76.7
MD16G1245000 Malus domestica HOM05D006260 ORTHO05D007860 5.0e-67 258.1 175 77.7
Lj5A660T21 Lonicera japonica HOM05D006260 ORTHO05D007860 6.5e-67 257.7 176 79.0
RcHm_v2.0_Chr4g0398801 Rosa chinensis HOM05D006260 ORTHO05D007860 6.5e-67 257.7 176 77.8
Nitab4.5_0009368g0010 Nicotiana tabacum HOM05D006260 ORTHO05D007860 8.5e-67 257.3 179 77.1
Potri.006G072600 Populus trichocarpa HOM05D006260 ORTHO05D007860 8.5e-67 257.3 176 76.1
CARHR109790 Cardamine hirsuta HOM05D006260 ORTHO05D007860 1.1e-66 256.9 177 78.5
Glyma.09G061600 Glycine max HOM05D006260 ORTHO05D007860 1.1e-66 256.9 158 82.9
Prupe.1G072000 Prunus persica HOM05D006260 ORTHO05D007860 1.1e-66 256.9 178 77.0
FAN22G1136 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.4e-66 256.5 173 77.5
Gohir.A05G408800 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.4e-66 256.5 176 76.7
Manes.14G161300 Manihot esculenta HOM05D006260 ORTHO05D007860 1.4e-66 256.5 164 79.3
FAN07G2370 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.9e-66 256.1 177 75.7
PGR018G0003 Punica granatum HOM05D006260 ORTHO05D007860 2.5e-66 255.8 180 76.7
PGR142G0891 Punica granatum HOM05D006260 ORTHO05D007860 2.5e-66 255.8 180 76.7
PGR142G1877 Punica granatum HOM05D006260 ORTHO05D007860 2.5e-66 255.8 180 76.7
A03p59290 Brassica napus HOM05D006260 ORTHO05D007860 5.5e-66 254.6 175 74.3
MD16G1244900 Malus domestica HOM05D006260 ORTHO05D007860 5.5e-66 254.6 176 76.7
CANSAT21G0469 Cannabis sativa HOM05D006260 ORTHO05D007860 9.3e-66 253.8 173 75.7
BraA03t14986Z Brassica rapa HOM05D006260 ORTHO05D007860 1.2e-65 253.4 175 74.3
CSS0028862 Camellia sinensis var. sinensis HOM05D006260 ORTHO05D007860 2.7e-65 252.3 180 75.0
Glyma.15G167900 Glycine max HOM05D006260 ORTHO05D007860 2.7e-65 252.3 173 76.9
Phvul.009G234400 Phaseolus vulgaris HOM05D006260 ORTHO05D007860 2.7e-65 252.3 177 75.1
CDE07G0891 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 4.6e-65 251.5 153 81.0
MBI14_g10729_MAGBIO Magnolia biondii HOM05D006260 ORTHO05D007860 4.6e-65 251.5 176 73.9
Psat1g142480 Pisum sativum HOM05D006260 ORTHO05D007860 4.6e-65 251.5 176 73.9
C07p57300 Brassica napus HOM05D006260 ORTHO05D007860 1.3e-64 250.0 175 73.1
BolC7t46199H Brassica oleracea HOM05D006260 ORTHO05D007860 1.3e-64 250.0 175 73.1
SGA_v2.0_scaffold112G31634 Striga asiatica HOM05D006260 ORTHO05D007860 1.8e-64 249.6 151 86.8
Lsat_1_v5_gn_7_55181 Lactuca sativa HOM05D006260 ORTHO05D007860 2.3e-64 249.2 153 80.4
Lj6g0019941 Lotus japonicus HOM05D006260 ORTHO05D007860 2.3e-64 249.2 178 74.7
DCAR_018008 Daucus carota HOM05D006260 ORTHO05D007860 3.0e-64 248.8 153 83.7
Ah.14g085330 Amaranthus hybridus HOM05D006260 ORTHO05D007860 6.7e-64 247.7 169 75.7
TPR.G2550 Trifolium pratense HOM05D006260 ORTHO05D007860 5.7e-63 244.6 158 76.6
HanXRQChr09g0245351 Helianthus annuus HOM05D006260 ORTHO05D007860 7.4e-63 244.2 153 80.4
ATR0580G108 Amborella trichopoda HOM05D006260 ORTHO05D007860 9.7e-63 243.8 174 73.0
Peaxi162Scf00421g00071 Petunia axillaris HOM05D006260 ORTHO05D007860 2.2e-62 242.7 161 78.9
TAR383G0359 Trochodendron aralioides HOM05D006260 ORTHO05D007860 2.8e-62 242.3 162 79.0
AT2G19340 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 3.7e-62 241.9 160 78.1
Medtr2g038390 Medicago truncatula HOM05D006260 ORTHO05D007860 4.8e-62 241.5 174 72.4
Ca_02129_v3 Cicer arietinum L. HOM05D006260 ORTHO05D007860 1.4e-61 240.0 151 78.8
AUR62027428 Chenopodium quinoa HOM05D006260 ORTHO05D007860 3.1e-61 238.8 147 81.6
Ah.09g228540 Amaranthus hybridus HOM05D006260 ORTHO05D007860 4.1e-61 238.4 169 71.0
SHI03067 Sapria himalayana HOM05D006260 ORTHO05D007860 5.3e-61 238.0 158 77.2
Aqoxy7G02900 Aquilegia oxysepala HOM05D006260 ORTHO05D007860 2.0e-60 236.1 173 73.4
Manes.06G017400 Manihot esculenta HOM05D006260 ORTHO05D007860 7.7e-60 234.2 152 76.3
Sc18g0003820 Simmondsia chinensis HOM05D006260 ORTHO05D007860 1.0e-59 233.8 165 73.3
Zm00001eb112720 Zea mays HOM05D006260 ORTHO05D007860 6.5e-59 231.1 176 69.3
CiPaw.07G199300 Carya illinoinensis HOM05D006260 ORTHO05D007860 1.9e-58 229.6 153 74.5
Zm00001eb169590 Zea mays HOM05D006260 ORTHO05D007860 4.2e-58 228.4 176 68.8
FAN17G2269 Fragaria x ananassa HOM05D006260 ORTHO05D007860 7.2e-58 227.6 155 75.5
CDE06G1002 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 7.9e-57 224.2 156 73.7
HPP92_027392 Vanilla planifolia HOM05D006260 ORTHO05D007860 1.0e-56 223.8 175 68.0
QL02p064675 Quercus lobata HOM05D006260 ORTHO05D007860 3.9e-56 221.9 167 71.9
Mapoly0039s0076 Marchantia polymorpha HOM05D006260 ORTHO05D007860 7.4e-55 217.6 152 74.3
Sed0019929 Sechium edule HOM05D006260 ORTHO05D007860 7.4e-55 217.6 150 76.7
CBR_g37526 Chara braunii HOM05D006260 ORTHO05D007860 3.2e-50 202.2 153 64.7
PSO170G1526 Papaver somniferum HOM05D006260 ORTHO05D007860 5.5e-50 201.4 131 79.4
TAR626G1894 Trochodendron aralioides HOM05D006260 ORTHO05D007860 2.1e-49 199.5 120 86.7
Cpa.g.sc115.60 Carica papaya HOM05D006260 ORTHO05D007860 4.7e-49 198.4 118 85.6
SMO329G0049 Selaginella moellendorffii HOM05D006260 ORTHO05D007860 1.4e-48 196.8 154 67.5
SEGI_37789 Sequoiadendron giganteum HOM05D006260 ORTHO05D007860 3.0e-48 195.7 159 66.0
Sabra06G0054000 Salix brachista HOM05D006260 ORTHO05D007860 1.5e-47 193.4 120 80.8
ECA240G0773 Erigeron canadensis HOM05D006260 ORTHO05D007860 9.7e-47 190.7 121 82.6
AagrBONN_evm.TU.Sc2ySwM_362.1716 Anthoceros agrestis HOM05D006260 ORTHO05D007860 3.1e-45 185.7 152 62.5
Pp3c5_8110 Physcomitrium patens HOM05D006260 ORTHO05D007860 1.0e-43 180.6 131 67.2
Sabra18G0114100 Salix brachista HOM05D006260 ORTHO05D007860 1.0e-43 180.6 108 84.3
AUR62031268 Chenopodium quinoa HOM05D006260 ORTHO05D007860 5.0e-43 178.3 107 83.2
EL10Ac8g19294 Beta vulgaris HOM05D006260 ORTHO05D007860 6.1e-41 171.4 107 80.4
BcaNung00497 Brassica carinata HOM05D006260 ORTHO05D007860 6.7e-40 167.9 129 71.3
Lj5C609T1 Lonicera japonica HOM05D006260 ORTHO05D007860 6.5e-35 151.4 91 84.6
Cre12.g528150 Chlamydomonas reinhardtii HOM05D006260 ORTHO05D007860 1.7e-27 126.7 123 48.0
TWI39G0723 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 1.6e-17 93.6 106 55.7
MD13G1241300 Malus domestica HOM05D006260 ORTHO05D249159 9.5e-10 67.8 118 42.4


User provided reference genes

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