Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 1.1e-133 480.7 245 100.0
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 8.7e-51 205.3 214 50.9
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 1.4e-48 198.0 215 49.8
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 5.8e-47 192.6 201 51.2
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 5.8e-47 192.6 201 51.2
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 1.7e-46 191.0 201 50.2
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 4.9e-46 189.5 243 45.3
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 6.4e-46 189.1 199 50.8
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 2.4e-45 187.2 201 49.8
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 5.4e-45 186.0 253 45.8
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 9.3e-45 185.3 203 49.8
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 1.6e-44 184.5 208 51.4
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 6.0e-44 182.6 200 48.0
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 1.7e-43 181.0 243 44.0
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 6.2e-41 172.6 201 47.8
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 1.4e-40 171.4 208 45.7
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 1.8e-40 171.0 221 44.3
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 6.9e-40 169.1 186 50.0
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 6.9e-40 169.1 241 42.3
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 3.8e-38 163.3 228 43.0
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 6.4e-38 162.5 197 46.7
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 1.1e-37 161.8 202 43.1
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 1.9e-37 161.0 197 46.7
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 4.2e-37 159.8 221 44.8
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 5.4e-37 159.5 190 46.8
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 2.1e-36 157.5 263 39.5
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 3.5e-36 156.8 201 42.8
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 4.6e-36 156.4 173 52.0
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 1.8e-35 154.5 183 45.9
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 8.7e-35 152.1 198 45.5
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 1.1e-34 151.8 189 42.3
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 1.1e-34 151.8 197 45.7
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 1.1e-34 151.8 209 44.0
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 2.5e-34 150.6 182 45.6
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 4.3e-34 149.8 198 44.4
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 5.6e-34 149.4 184 45.1
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 3.7e-33 146.7 184 44.0
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 4.8e-33 146.4 189 46.0
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 9.0e-32 142.1 154 50.0
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 2.0e-31 141.0 189 42.9
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 2.6e-31 140.6 189 43.4
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 3.4e-31 140.2 182 43.4
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 3.4e-31 140.2 189 42.9
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 4.5e-31 139.8 182 43.4
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 7.6e-31 139.0 206 37.9
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 2.2e-30 137.5 208 40.4
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 8.4e-30 135.6 201 41.3
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 1.1e-29 135.2 159 45.9
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 4.2e-29 133.3 229 37.6
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 7.1e-29 132.5 202 40.1
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 1.2e-28 131.7 174 42.5
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 6.0e-28 129.4 189 39.7
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 8.7e-27 125.6 203 41.4
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 2.5e-26 124.0 156 45.5
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 9.6e-26 122.1 207 39.1
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 3.7e-25 120.2 138 47.1
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 4.0e-24 116.7 200 42.0
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 7.6e-23 112.5 182 36.8
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 1.1e-21 108.6 171 36.8
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 1.4e-21 108.2 163 35.6
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 1.4e-21 108.2 235 32.3
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 4.2e-21 106.7 152 42.1
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 1.6e-20 104.8 182 34.6
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 3.5e-20 103.6 166 37.3
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 4.6e-20 103.2 175 34.3
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 2.3e-19 100.9 134 42.5
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 1.1e-18 98.6 137 40.9
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 3.3e-18 97.1 137 40.1
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 3.3e-18 97.1 137 40.1
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 4.3e-18 96.7 137 39.4
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 1.6e-17 94.7 187 35.8
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 2.8e-17 94.0 164 37.8
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 3.7e-17 93.6 162 38.9
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 3.7e-17 93.6 173 35.3
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 8.2e-17 92.4 173 38.2
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 8.2e-17 92.4 161 37.9
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 2.4e-16 90.9 150 36.7
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 2.4e-16 90.9 187 34.8
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 5.9e-15 86.3 168 33.3
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 1.0e-14 85.5 131 35.1
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 3.8e-14 83.6 167 30.5
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 6.5e-14 82.8 167 30.5
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 1.1e-13 82.0 161 35.4
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 1.1e-13 82.0 135 35.6
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 1.9e-13 81.3 148 38.5
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 9.4e-13 79.0 173 33.5
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 1.2e-12 78.6 182 31.3
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 2.7e-12 77.4 96 45.8
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 2.7e-12 77.4 212 30.7
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 3.6e-12 77.0 150 32.0
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 1.0e-11 75.5 172 30.8
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 2.3e-11 74.3 124 36.3
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 2.3e-11 74.3 124 36.3
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.3e-09 68.6 127 33.1
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 2.8e-09 67.4 115 33.0
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 3.7e-09 67.0 127 33.1
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 6.3e-09 66.2 127 32.3
Nn2g14540 Nelumbo nucifera HOM05D007281 ORTHO05D009241 3.1e-08 63.9 96 40.6
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 4.1e-08 63.5 117 33.3
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 1.2e-07 62.0 120 32.5


User provided reference genes

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