Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g06260 Coffea canephora HOM05D006426 ORTHO05D007737 2.6e-254 881.7 491 100.0
Nitab4.5_0001871g0070 Nicotiana tabacum HOM05D006426 ORTHO05D007737 7.0e-135 485.0 494 62.6
PGSC0003DMG400018371 Solanum tuberosum HOM05D006426 ORTHO05D007737 1.4e-130 470.7 494 61.9
Nitab4.5_0002370g0070 Nicotiana tabacum HOM05D006426 ORTHO05D007737 2.3e-130 469.9 494 62.3
Sopen07g028590 Solanum pennellii HOM05D006426 ORTHO05D007737 5.2e-130 468.8 494 61.5
Peaxi162Scf00007g00272 Petunia axillaris HOM05D006426 ORTHO05D007737 2.6e-129 466.5 494 61.5
Solyc07g054690.1 Solanum lycopersicum HOM05D006426 ORTHO05D007737 4.1e-127 459.1 494 60.5
MSTRG.14180 Avicennia marina HOM05D006426 ORTHO05D007737 9.2e-127 458.0 492 60.2
CAN.G508.22 Capsicum annuum HOM05D006426 ORTHO05D007737 2.7e-126 456.4 493 62.1
Dinv15495 Davidia involucrata HOM05D006426 ORTHO05D007737 1.0e-125 454.5 492 60.0
Actinidia12458 Actinidia chinensis HOM05D006426 ORTHO05D007737 4.0e-122 442.6 483 59.4
Oeu025481.1 Olea europaea HOM05D006426 ORTHO05D007737 2.9e-120 436.4 524 57.1
Actinidia09902 Actinidia chinensis HOM05D006426 ORTHO05D007737 4.0e-114 416.0 467 57.0
Oeu018075.1 Olea europaea HOM05D006426 ORTHO05D007737 8.4e-112 408.3 493 54.6
QL08p037311 Quercus lobata HOM05D006426 ORTHO05D007737 3.5e-110 402.9 503 52.5
Hma1.2p1_0565F.1_g179550 Hydrangea macrophylla HOM05D006426 ORTHO05D007737 1.3e-109 401.0 482 56.2
Rhsim06G0152100 Rhododendron simsii HOM05D006426 ORTHO05D007737 1.3e-109 401.0 507 55.4
Cfa014544 Carpinus fangiana HOM05D006426 ORTHO05D007737 1.8e-106 390.6 493 52.5
Haze_13087 Corylus avellana HOM05D006426 ORTHO05D007737 2.4e-106 390.2 493 52.5
Migut.H01020 Erythranthe guttata HOM05D006426 ORTHO05D007737 1.7e-104 384.0 501 53.9
TAR627G1051 Trochodendron aralioides HOM05D006426 ORTHO05D007737 3.5e-102 376.3 495 50.7
TWI75G1119 Tripterygium wilfordii HOM05D006426 ORTHO05D007737 7.9e-102 375.2 500 49.8
Thecc.02G171600 Theobroma cacao HOM05D006426 ORTHO05D007737 3.3e-100 369.8 499 50.7
TWI36G1326 Tripterygium wilfordii HOM05D006426 ORTHO05D007737 7.3e-100 368.6 501 49.9
CiPaw.04G122700 Carya illinoinensis HOM05D006426 ORTHO05D007737 1.6e-99 367.5 495 50.9
TWI18G0136 Tripterygium wilfordii HOM05D006426 ORTHO05D007737 1.8e-98 364.0 505 49.9
Nn1g03877 Nelumbo nucifera HOM05D006426 ORTHO05D007737 6.9e-98 362.1 497 50.3
Ciclev10015289m.g Citrus clementina HOM05D006426 ORTHO05D007737 9.0e-98 361.7 496 49.8
Gohir.A03G160000 Gossypium hirsutum HOM05D006426 ORTHO05D007737 1.7e-96 357.5 499 48.1
Gorai.005G205500 Gossypium raimondii HOM05D006426 ORTHO05D007737 2.4e-95 353.6 499 47.5
COL.COLO4_13683 Corchorus olitorius HOM05D006426 ORTHO05D007737 4.2e-95 352.8 498 48.2
Prupe.3G231100 Prunus persica HOM05D006426 ORTHO05D007737 4.2e-95 352.8 494 51.6
Gohir.D02G183100 Gossypium hirsutum HOM05D006426 ORTHO05D007737 7.1e-95 352.1 499 47.3
Potri.019G116200 Populus trichocarpa HOM05D006426 ORTHO05D007737 9.3e-95 351.7 502 49.4
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 1.6e-94 350.9 499 50.5
Potri.013G147500 Populus trichocarpa HOM05D006426 ORTHO05D007737 5.1e-93 345.9 503 49.5
Manes.13G151600 Manihot esculenta HOM05D006426 ORTHO05D007737 8.7e-93 345.1 501 48.5
MD09G1096400 Malus domestica HOM05D006426 ORTHO05D007737 1.5e-92 344.4 497 48.7
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 2.5e-92 343.6 508 49.8
Cpa.g.sc34.90 Carica papaya HOM05D006426 ORTHO05D007737 3.3e-92 343.2 500 48.6
EL10Ac9g20938 Beta vulgaris HOM05D006426 ORTHO05D007737 5.6e-92 342.4 502 51.0
Duzib248G1395 Durio zibethinus HOM05D006426 ORTHO05D007737 5.6e-92 342.4 497 48.3
Sabra19G0136500 Salix brachista HOM05D006426 ORTHO05D007737 1.3e-91 341.3 501 48.5
Duzib132G0414 Durio zibethinus HOM05D006426 ORTHO05D007737 1.1e-90 338.2 492 48.4
Sabra19G0117200 Salix brachista HOM05D006426 ORTHO05D007737 1.1e-90 338.2 501 47.7
MD17G1084500 Malus domestica HOM05D006426 ORTHO05D007737 1.8e-90 337.4 500 48.8
Sabra13G0119100 Salix brachista HOM05D006426 ORTHO05D007737 2.0e-89 334.0 502 47.8
TAR626G1919 Trochodendron aralioides HOM05D006426 ORTHO05D007737 7.6e-89 332.0 489 45.2
RcHm_v2.0_Chr2g0161781 Rosa chinensis HOM05D006426 ORTHO05D007737 7.1e-87 325.5 495 48.7
TAR629G2656 Trochodendron aralioides HOM05D006426 ORTHO05D007737 1.1e-84 318.2 448 47.5
PGR042G3565 Punica granatum HOM05D006426 ORTHO05D007737 2.5e-84 317.0 507 45.8
Manes.12G083000 Manihot esculenta HOM05D006426 ORTHO05D007737 3.3e-84 316.6 499 45.7
FvH4_6g44570 Fragaria vesca HOM05D006426 ORTHO05D007737 9.6e-84 315.1 497 47.7
SalBow1G4632 Salvia bowleyana HOM05D006426 ORTHO05D007737 2.8e-83 313.5 496 51.0
FAN14G1414 Fragaria x ananassa HOM05D006426 ORTHO05D007737 4.8e-83 312.8 497 47.5
FAN02G4384 Fragaria x ananassa HOM05D006426 ORTHO05D007737 1.8e-82 310.8 497 47.1
FAN09G0359 Fragaria x ananassa HOM05D006426 ORTHO05D007737 1.3e-80 304.7 497 46.5
DCAR_009725 Daucus carota HOM05D006426 ORTHO05D007737 6.5e-80 302.4 494 48.0
Lj8P117T60 Lonicera japonica HOM05D006426 ORTHO05D007737 8.4e-80 302.0 375 54.1
SGA_v2.0_scaffold49G18304 Striga asiatica HOM05D006426 ORTHO05D007737 2.8e-75 287.0 500 47.2
Sc06g0009150 Simmondsia chinensis HOM05D006426 ORTHO05D007737 7.2e-71 272.3 491 44.0
unitig_52.g17339 Utricularia gibba HOM05D006426 ORTHO05D007737 7.2e-71 272.3 480 43.1
THA.LOC104804065 Tarenaya hassleriana HOM05D006426 ORTHO05D007737 9.4e-71 271.9 474 42.6
ClCG02G017320 Citrullus lanatus HOM05D006426 ORTHO05D007737 2.1e-70 270.8 499 43.3
MELO3C013535.2 Cucumis melo HOM05D006426 ORTHO05D007737 2.7e-70 270.4 498 43.2
Thhalv10025277m.g Eutrema salsugineum HOM05D006426 ORTHO05D007737 9.7e-68 261.9 493 40.4
Eucgr.A01776 Eucalyptus grandis HOM05D006426 ORTHO05D007737 3.7e-67 260.0 452 44.5
Sed0007067 Sechium edule HOM05D006426 ORTHO05D007737 4.8e-67 259.6 500 43.0
CARHR235940 Cardamine hirsuta HOM05D006426 ORTHO05D007737 1.1e-66 258.5 493 41.0
Atru.chr6.3076 Acer truncatum HOM05D006426 ORTHO05D007737 1.4e-66 258.1 335 54.9
CsaV3_6G012420 Cucumis sativus L. HOM05D006426 ORTHO05D007737 6.9e-66 255.8 501 43.3
AL7G24370 Arabidopsis lyrata HOM05D006426 ORTHO05D007737 4.2e-63 246.5 493 40.8
arahy.Tifrunner.gnm1.ann1.512YGT Arachis hypogaea HOM05D006426 ORTHO05D007737 4.2e-63 246.5 522 39.3
PSO832G1174 Papaver somniferum HOM05D006426 ORTHO05D007737 1.2e-62 245.0 494 40.7
arahy.Tifrunner.gnm1.ann1.2866YZ Arachis hypogaea HOM05D006426 ORTHO05D007737 1.6e-62 244.6 522 39.5
PSO210G4394 Papaver somniferum HOM05D006426 ORTHO05D007737 1.0e-61 241.9 491 39.9
DCAR_012977 Daucus carota HOM05D006426 ORTHO05D007737 3.9e-61 240.0 493 37.9
AT4G28230 Arabidopsis thaliana HOM05D006426 ORTHO05D007737 5.1e-61 239.6 495 40.6
Sp7g26190 Schrenkiella parvula HOM05D006426 ORTHO05D007737 1.5e-60 238.0 494 40.5
Aqoxy1G03895 Aquilegia oxysepala HOM05D006426 ORTHO05D007737 2.6e-60 237.3 560 37.0
Carub.0007s1253 Capsella rubella HOM05D006426 ORTHO05D007737 5.7e-60 236.1 478 39.5
Aa31LG2G22090 Aethionema arabicum HOM05D006426 ORTHO05D007737 1.8e-58 231.1 486 40.3
A01p19640 Brassica napus HOM05D006426 ORTHO05D007737 1.7e-56 224.6 490 38.8
PSO675G8522 Papaver somniferum HOM05D006426 ORTHO05D007737 3.8e-56 223.4 528 39.6
BcaNung01587 Brassica carinata HOM05D006426 ORTHO05D007737 3.2e-55 220.3 490 38.6
BraA01t01897Z Brassica rapa HOM05D006426 ORTHO05D007737 3.0e-53 213.8 490 37.6
Lsat_1_v5_gn_4_69460 Lactuca sativa HOM05D006426 ORTHO05D007737 1.5e-52 211.5 520 38.5
MBI18_g45419_MAGBIO Magnolia biondii HOM05D006426 ORTHO05D007737 2.0e-52 211.1 509 40.7
PSO541G1576 Papaver somniferum HOM05D006426 ORTHO05D007737 2.0e-52 211.1 529 38.8
BcaC09g50504 Brassica carinata HOM05D006426 ORTHO05D007737 1.0e-48 198.7 492 36.4
BolC1t02416H Brassica oleracea HOM05D006426 ORTHO05D007737 5.0e-48 196.4 490 35.5
C01p24670 Brassica napus HOM05D006426 ORTHO05D007737 1.1e-47 195.3 490 35.3
HanXRQChr15g0488091 Helianthus annuus HOM05D006426 ORTHO05D007737 3.2e-47 193.7 496 37.1
ECA232G2383 Erigeron canadensis HOM05D006426 ORTHO05D007737 2.1e-46 191.0 514 36.6
SGA_v2.0_scaffold159G37625 Striga asiatica HOM05D006426 ORTHO05D007737 7.5e-44 182.6 358 39.4
Lj3g0000273 Lotus japonicus HOM05D006426 ORTHO05D007737 2.2e-43 181.0 519 34.1
Lalb_Chr01g0017281 Lupinus albus HOM05D006426 ORTHO05D007737 2.0e-41 174.5 405 39.0
Glyma.11G158800 Glycine max HOM05D006426 ORTHO05D007737 4.7e-38 163.3 487 35.1
VMungo1080G0900 Vigna mungo HOM05D006426 ORTHO05D007737 6.3e-35 152.9 483 31.7
Phvul.005G017100 Phaseolus vulgaris HOM05D006426 ORTHO05D007737 8.3e-35 152.5 483 32.3
ATR0693G210 Amborella trichopoda HOM05D006426 ORTHO05D007737 2.7e-33 147.5 557 32.0
Glyma.04G132700 Glycine max HOM05D006426 ORTHO05D007737 2.7e-33 147.5 362 35.9
Sed0009175 Sechium edule HOM05D006426 ORTHO05D007737 7.7e-33 146.0 426 34.5
Medtr3g013540 Medicago truncatula HOM05D006426 ORTHO05D007737 5.7e-28 129.8 434 34.3
unitig_62.g23190 Utricularia gibba HOM05D006426 ORTHO05D007737 1.1e-26 125.6 163 49.7
Lj1P736T39 Lonicera japonica HOM05D006426 ORTHO05D007737 7.8e-25 119.4 185 48.1
Psat5g223040 Pisum sativum HOM05D006426 ORTHO05D007737 2.3e-24 117.9 394 34.0
Oeu029930.1 Olea europaea HOM05D006426 ORTHO05D007737 1.1e-23 115.5 165 49.7
GSVIVG01030006001 Vitis vinifera HOM05D006426 ORTHO05D007737 1.1e-23 115.5 171 48.5
FvH4_6g44594 Fragaria vesca HOM05D006426 ORTHO05D007737 1.6e-22 111.7 171 41.5
Oeu035359.1 Olea europaea HOM05D006426 ORTHO05D007737 4.7e-22 110.2 165 48.5
Oeu003230.1 Olea europaea HOM05D006426 ORTHO05D007737 4.0e-21 107.1 168 48.8
CDE10G0475 Ceratophyllum demersum HOM05D006426 ORTHO05D007737 5.8e-20 103.2 530 28.3
Ca_18074_v3 Cicer arietinum L. HOM05D006426 ORTHO05D007737 4.9e-19 100.1 455 29.7
TPR.G1458 Trifolium pratense HOM05D006426 ORTHO05D007737 1.9e-18 98.2 376 31.9
HPP92_011117 Vanilla planifolia HOM05D006426 ORTHO05D007737 2.3e-13 81.3 393 29.8
HPP92_011122 Vanilla planifolia HOM05D006426 ORTHO05D007737 1.7e-11 75.1 360 29.7
Atru.chr6.3075 Acer truncatum HOM05D006426 ORTHO05D007737 2.7e-09 67.8 69 46.4
SGA_v2.0_scaffold51G18895 Striga asiatica HOM05D001803 ORTHO05D001686 1.0e-08 65.9 150 37.3
SabraUnG0004200 Salix brachista HOM05D006426 ORTHO05D007737 4.7e-06 57.0 120 39.2


User provided reference genes

Program Settings