Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g06250 Coffea canephora HOM05D001554 ORTHO05D152972 3.6e-56 221.5 122 100.0
Cc05_g06180 Coffea canephora HOM05D001554 ORTHO05D001481 1.6e-32 142.9 84 100.0
Ca_01538_v3 Cicer arietinum L. HOM05D001554 ORTHO05D001481 2.6e-14 82.4 95 54.7
Dinv15498 Davidia involucrata HOM05D001554 ORTHO05D001481 4.5e-14 81.6 88 54.5
Nitab4.5_0012449g0020 Nicotiana tabacum HOM05D001554 ORTHO05D001481 7.6e-14 80.9 88 61.4
Hma1.2p1_0662F.1_g198290 Hydrangea macrophylla HOM05D001554 ORTHO05D001481 1.7e-13 79.7 84 56.0
Peaxi162Scf00007g02536 Petunia axillaris HOM05D001554 ORTHO05D001481 2.2e-13 79.3 90 65.6
VMungo1127G0747 Vigna mungo HOM05D001554 ORTHO05D001481 2.2e-13 79.3 88 50.0
Lj3g0003030 Lotus japonicus HOM05D001554 ORTHO05D001481 2.9e-13 79.0 91 52.7
Nn1g06784 Nelumbo nucifera HOM05D001554 ORTHO05D001481 4.9e-13 78.2 84 48.8
Phvul.011G111000 Phaseolus vulgaris HOM05D001554 ORTHO05D001481 4.9e-13 78.2 89 48.3
Glyma.06G298500 Glycine max HOM05D001554 ORTHO05D001481 1.1e-12 77.0 96 59.4
Medtr2g089995 Medicago truncatula HOM05D001554 ORTHO05D001481 1.9e-12 76.3 94 58.5
Glyma.12G106750 Glycine max HOM05D001554 ORTHO05D001481 3.2e-12 75.5 90 47.8
Lj3g0014813 Lotus japonicus HOM05D001554 ORTHO05D001481 3.2e-12 75.5 88 48.9
PGSC0003DMG400018374 Solanum tuberosum HOM05D001554 ORTHO05D001481 3.2e-12 75.5 91 58.2
Sopen07g028670 Solanum pennellii HOM05D001554 ORTHO05D001481 5.4e-12 74.7 92 57.6
Solyc07g054740.3 Solanum lycopersicum HOM05D001554 ORTHO05D001481 7.1e-12 74.3 92 57.6
arahy.Tifrunner.gnm1.ann1.8XPP8W Arachis hypogaea HOM05D001554 ORTHO05D001481 9.3e-12 73.9 92 58.7
arahy.Tifrunner.gnm1.ann1.WFJ76T Arachis hypogaea HOM05D001554 ORTHO05D001481 9.3e-12 73.9 92 58.7
Glyma.12G200900 Glycine max HOM05D001554 ORTHO05D001481 9.3e-12 73.9 88 48.9
Nn1g03872 Nelumbo nucifera HOM05D001554 ORTHO05D001481 1.2e-11 73.6 84 59.5
TPR.G27115 Trifolium pratense HOM05D001554 ORTHO05D001481 1.2e-11 73.6 96 54.2
TAR627G0496 Trochodendron aralioides HOM05D001554 ORTHO05D001481 1.2e-11 73.6 84 46.4
Psat5g269440 Pisum sativum HOM05D001554 ORTHO05D001481 1.6e-11 73.2 94 52.1
VMungo1080G1515 Vigna mungo HOM05D001554 ORTHO05D001481 1.6e-11 73.2 88 62.5
QL08p037107 Quercus lobata HOM05D001554 ORTHO05D001481 2.1e-11 72.8 90 55.6
Lalb_Chr19g0135511 Lupinus albus HOM05D001554 ORTHO05D001481 3.5e-11 72.0 94 54.3
Nitab4.5_0002791g0040 Nicotiana tabacum HOM05D001554 ORTHO05D001481 4.6e-11 71.6 95 61.1
TAR626G1416 Trochodendron aralioides HOM05D001554 ORTHO05D001481 6.0e-11 71.2 84 48.8
Glyma.13G301300 Glycine max HOM05D001554 ORTHO05D001481 1.0e-10 70.5 90 45.6
PSO210G4260 Papaver somniferum HOM05D001554 ORTHO05D001481 1.3e-10 70.1 92 56.5
ATR0693G235 Amborella trichopoda HOM05D001554 ORTHO05D001481 1.8e-10 69.7 95 47.4
CiPaw.03G169500 Carya illinoinensis HOM05D001554 ORTHO05D001481 2.3e-10 69.3 86 51.2
TAR624G1131 Trochodendron aralioides HOM05D001554 ORTHO05D001481 3.0e-10 68.9 88 46.6
MBI18_g27683_MAGBIO Magnolia biondii HOM05D001554 ORTHO05D001481 3.9e-10 68.6 84 45.2
Sed0002390 Sechium edule HOM05D001554 ORTHO05D001481 3.9e-10 68.6 87 46.0
CANSAT64G0206 Cannabis sativa HOM05D001554 ORTHO05D001481 5.1e-10 68.2 97 58.8
Haze_13079 Corylus avellana HOM05D001554 ORTHO05D001481 5.1e-10 68.2 88 43.2
Gohir.D06G127900 Gossypium hirsutum HOM05D001554 ORTHO05D001481 5.1e-10 68.2 85 45.9
CiPaw.04G122500 Carya illinoinensis HOM05D001554 ORTHO05D001481 8.7e-10 67.4 86 50.0
Gohir.A06G127400 Gossypium hirsutum HOM05D001554 ORTHO05D001481 8.7e-10 67.4 85 45.9
Lalb_Chr03g0029141 Lupinus albus HOM05D001554 ORTHO05D001481 1.1e-09 67.0 96 46.9
GSVIVG01014445001 Vitis vinifera HOM05D001554 ORTHO05D001481 1.5e-09 66.6 87 44.8
MBI02_g13227_MAGBIO Magnolia biondii HOM05D001554 ORTHO05D001481 1.9e-09 66.2 84 59.5
ClCG02G017300 Citrullus lanatus HOM05D001554 ORTHO05D001481 2.5e-09 65.9 89 43.8
Duzib235G0596 Durio zibethinus HOM05D001554 ORTHO05D001481 2.5e-09 65.9 87 43.7
Gohir.A05G166100 Gossypium hirsutum HOM05D001554 ORTHO05D001481 2.5e-09 65.9 87 44.8
Gohir.D05G169100 Gossypium hirsutum HOM05D001554 ORTHO05D001481 2.5e-09 65.9 87 44.8
Sed0014358 Sechium edule HOM05D001554 ORTHO05D001481 2.5e-09 65.9 85 49.4
Thecc.02G171300 Theobroma cacao HOM05D001554 ORTHO05D001481 2.5e-09 65.9 91 56.0
Thecc.06G200900 Theobroma cacao HOM05D001554 ORTHO05D001481 2.5e-09 65.9 87 44.8
Cfa014540 Carpinus fangiana HOM05D001554 ORTHO05D001481 3.3e-09 65.5 88 51.1
Eucgr.K00911 Eucalyptus grandis HOM05D001554 ORTHO05D001481 3.3e-09 65.5 90 41.1
TWI75G0202 Tripterygium wilfordii HOM05D001554 ORTHO05D001481 3.3e-09 65.5 87 42.5
Phvul.005G107900 Phaseolus vulgaris HOM05D001554 ORTHO05D001481 4.3e-09 65.1 93 52.7
TWI63G0743 Tripterygium wilfordii HOM05D001554 ORTHO05D001481 4.3e-09 65.1 85 60.0
Duzib132G0762 Durio zibethinus HOM05D001554 ORTHO05D001481 5.6e-09 64.7 89 56.2
Actinidia09905 Actinidia chinensis HOM05D001554 ORTHO05D001481 9.6e-09 63.9 71 43.7
Duzib248G1202 Durio zibethinus HOM05D001554 ORTHO05D001481 9.6e-09 63.9 90 54.4
Gohir.D10G022400 Gossypium hirsutum HOM05D001554 ORTHO05D001481 9.6e-09 63.9 87 41.4
RhsimUnG0258100 Rhododendron simsii HOM05D001554 ORTHO05D001481 9.6e-09 63.9 89 57.3
TWI38G0642 Tripterygium wilfordii HOM05D001554 ORTHO05D001481 9.6e-09 63.9 85 43.5
Gorai.010G149600 Gossypium raimondii HOM05D001554 ORTHO05D001481 1.3e-08 63.5 85 43.5
SGA_v2.0_scaffold73G24322 Striga asiatica HOM05D001554 ORTHO05D001481 1.3e-08 63.5 90 43.3
CDE05G0477 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 1.6e-08 63.2 76 44.7
CsaV3_6G012370 Cucumis sativus L. HOM05D001554 ORTHO05D001481 1.6e-08 63.2 93 50.5
CsaV3_6G012400 Cucumis sativus L. HOM05D001554 ORTHO05D001481 1.6e-08 63.2 93 50.5
Duzib192G0247 Durio zibethinus HOM05D001554 ORTHO05D001481 1.6e-08 63.2 86 44.2
Lalb_Chr05g0218131 Lupinus albus HOM05D001554 ORTHO05D001481 1.6e-08 63.2 92 43.5
TWI38G1921 Tripterygium wilfordii HOM05D001554 ORTHO05D001481 1.6e-08 63.2 85 42.4
Atru.chr6.3080 Acer truncatum HOM05D001554 ORTHO05D001481 2.1e-08 62.8 97 53.6
MELO3C013539.2 Cucumis melo HOM05D001554 ORTHO05D001481 2.1e-08 62.8 91 54.9
Eucgr.D00750 Eucalyptus grandis HOM05D001554 ORTHO05D001481 2.1e-08 62.8 91 41.8
Hund23601 Selenicereus undatus HOM05D001554 ORTHO05D001481 2.1e-08 62.8 86 41.9
Lalb_Chr09g0327271 Lupinus albus HOM05D001554 ORTHO05D001481 2.8e-08 62.4 91 45.1
Phvul.002G221100 Phaseolus vulgaris HOM05D001554 ORTHO05D001481 2.8e-08 62.4 91 58.2
CDE01G0605 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 3.7e-08 62.0 85 41.2
COL.COLO4_31596 Corchorus olitorius HOM05D001554 ORTHO05D001481 3.7e-08 62.0 88 53.4
PGR142G3172 Punica granatum HOM05D001554 ORTHO05D001481 3.7e-08 62.0 84 42.9
Ah.01g005220 Amaranthus hybridus HOM05D001554 ORTHO05D001481 4.8e-08 61.6 93 46.2
FAN02G3363 Fragaria x ananassa HOM05D001554 ORTHO05D001481 4.8e-08 61.6 92 45.7
TWI18G0388 Tripterygium wilfordii HOM05D001554 ORTHO05D001481 4.8e-08 61.6 87 40.2
COL.COLO4_13646 Corchorus olitorius HOM05D001554 ORTHO05D001481 6.2e-08 61.2 87 51.7
Gohir.A10G021600 Gossypium hirsutum HOM05D001554 ORTHO05D001481 6.2e-08 61.2 87 40.2
Gorai.011G023500 Gossypium raimondii HOM05D001554 ORTHO05D001481 6.2e-08 61.2 87 40.2
Lj2A279T54 Lonicera japonica HOM05D001554 ORTHO05D001481 6.2e-08 61.2 92 41.3
Nitab4.5_0009110g0020 Nicotiana tabacum HOM05D001554 ORTHO05D001481 6.2e-08 61.2 87 41.4
Thecc.07G070100 Theobroma cacao HOM05D001554 ORTHO05D001481 8.1e-08 60.8 89 48.3
DCAR_004149 Daucus carota HOM05D001554 ORTHO05D001481 1.1e-07 60.5 90 43.3
FAN21G0106 Fragaria x ananassa HOM05D001554 ORTHO05D001481 1.1e-07 60.5 85 54.1
PSO675G9220 Papaver somniferum HOM05D001554 ORTHO05D001481 1.1e-07 60.5 103 52.4
TWI38G1968 Tripterygium wilfordii HOM05D001554 ORTHO05D001481 1.1e-07 60.5 86 60.5
HanXRQChr05g0144291 Helianthus annuus HOM05D001554 ORTHO05D001481 1.4e-07 60.1 91 54.9
MD05G1326200 Malus domestica HOM05D001554 ORTHO05D001481 1.4e-07 60.1 89 40.4
Manes.17G033500 Manihot esculenta HOM05D001554 ORTHO05D001481 1.4e-07 60.1 88 39.8
Psat7g107800 Pisum sativum HOM05D001554 ORTHO05D001481 1.4e-07 60.1 99 55.6
Dinv18986 Davidia involucrata HOM05D001554 ORTHO05D001481 1.8e-07 59.7 92 52.2
FvH4_3g03880 Fragaria vesca HOM05D001554 ORTHO05D001481 1.8e-07 59.7 86 53.5
FAN11G4017 Fragaria x ananassa HOM05D001554 ORTHO05D001481 1.8e-07 59.7 86 53.5
FAN16G2464 Fragaria x ananassa HOM05D001554 ORTHO05D001481 1.8e-07 59.7 86 53.5
Glyma.07G189400 Glycine max HOM05D001554 ORTHO05D001481 1.8e-07 59.7 95 55.8
Gohir.D05G328400 Gossypium hirsutum HOM05D001554 ORTHO05D001481 1.8e-07 59.7 86 41.9
Lsat_1_v5_gn_7_105960 Lactuca sativa HOM05D001554 ORTHO05D001481 1.8e-07 59.7 86 39.5
Lj1A854T35 Lonicera japonica HOM05D001554 ORTHO05D001481 1.8e-07 59.7 85 40.0
Prupe.4G035500 Prunus persica HOM05D001554 ORTHO05D001481 1.8e-07 59.7 88 42.0
RcHm_v2.0_Chr2g0161541 Rosa chinensis HOM05D001554 ORTHO05D001481 1.8e-07 59.7 96 46.9
Hund23370 Selenicereus undatus HOM05D001554 ORTHO05D001481 1.8e-07 59.7 93 35.5
CSS0029752 Camellia sinensis var. sinensis HOM05D001554 ORTHO05D001481 2.4e-07 59.3 75 40.0
Ciclev10016298m.g Citrus clementina HOM05D001554 ORTHO05D001481 2.4e-07 59.3 87 56.3
Hma1.2p1_1182F.1_g264780 Hydrangea macrophylla HOM05D001554 ORTHO05D001481 2.4e-07 59.3 86 41.9
Manes.16G020000 Manihot esculenta HOM05D001554 ORTHO05D001481 2.4e-07 59.3 86 57.0
Nitab4.5_0000297g0180 Nicotiana tabacum HOM05D001554 ORTHO05D001481 2.4e-07 59.3 87 41.4
Oeu038208.1 Olea europaea HOM05D001554 ORTHO05D001481 2.4e-07 59.3 93 50.5
RcHm_v2.0_Chr5g0006131 Rosa chinensis HOM05D001554 ORTHO05D001481 2.4e-07 59.3 87 55.2
Hund08049 Selenicereus undatus HOM05D001554 ORTHO05D001481 2.4e-07 59.3 100 38.0
GSVIVG01003659001 Vitis vinifera HOM05D001554 ORTHO05D001481 2.4e-07 59.3 90 41.1
CiPaw.11G177600 Carya illinoinensis HOM05D001554 ORTHO05D001481 3.1e-07 58.9 89 41.6
Duzib160G0430 Durio zibethinus HOM05D001554 ORTHO05D001481 3.1e-07 58.9 87 49.4
Glyma.08G059800 Glycine max HOM05D001554 ORTHO05D001481 3.1e-07 58.9 94 57.4
CSS0033310 Camellia sinensis var. sinensis HOM05D001554 ORTHO05D001481 4.0e-07 58.5 84 40.5
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 4.0e-07 58.5 76 50.0
CDE12G0494 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 4.0e-07 58.5 85 42.4
Ca_18476_v3 Cicer arietinum L. HOM05D001554 ORTHO05D001481 4.0e-07 58.5 92 57.6
FAN25G2960 Fragaria x ananassa HOM05D001554 ORTHO05D001481 4.0e-07 58.5 75 57.3
vmacro09570 Vaccinium macrocarpon HOM05D001554 ORTHO05D001481 4.0e-07 58.5 88 39.8
Ciclev10016218m.g Citrus clementina HOM05D001554 ORTHO05D001481 5.3e-07 58.2 101 49.5
PSO541G0618 Papaver somniferum HOM05D001554 ORTHO05D001481 5.3e-07 58.2 102 51.0
Duzib052G1184 Durio zibethinus HOM05D001554 ORTHO05D001481 6.9e-07 57.8 89 38.2
Lsat_1_v5_gn_1_122940 Lactuca sativa HOM05D001554 ORTHO05D001481 6.9e-07 57.8 90 40.0
SEGI_08362 Sequoiadendron giganteum HOM05D001554 ORTHO05D001481 6.9e-07 57.8 73 39.7
PGSC0003DMG400019246 Solanum tuberosum HOM05D001554 ORTHO05D001481 6.9e-07 57.8 86 44.2
Actinidia12459 Actinidia chinensis HOM05D001554 ORTHO05D001481 9.0e-07 57.4 85 41.2
Duzib213G0059 Durio zibethinus HOM05D001554 ORTHO05D001481 9.0e-07 57.4 86 46.5
Os07g0558800 Oryza sativa ssp. japonica HOM05D001554 ORTHO05D001481 9.0e-07 57.4 88 53.4
Solyc07g063630.3 Solanum lycopersicum HOM05D001554 ORTHO05D001481 9.0e-07 57.4 87 44.8
Sopen07g031810 Solanum pennellii HOM05D001554 ORTHO05D001481 9.0e-07 57.4 87 44.8
arahy.Tifrunner.gnm1.ann1.YHX78I Arachis hypogaea HOM05D001554 ORTHO05D001481 1.2e-06 57.0 96 52.1
Glyma.15G067100 Glycine max HOM05D001554 ORTHO05D001481 1.2e-06 57.0 85 43.5
TPR.G15381 Trifolium pratense HOM05D001554 ORTHO05D001481 1.5e-06 56.6 101 47.5
MSTRG.13177 Avicennia marina HOM05D001554 ORTHO05D001481 2.6e-06 55.8 93 41.9
FvH4_6g44480 Fragaria vesca HOM05D001554 ORTHO05D001481 2.6e-06 55.8 96 43.8
FAN05G2599 Fragaria x ananassa HOM05D001554 ORTHO05D001481 2.6e-06 55.8 96 43.8
FAN14G1911 Fragaria x ananassa HOM05D001554 ORTHO05D001481 2.6e-06 55.8 96 43.8
MD17G1085000 Malus domestica HOM05D001554 ORTHO05D001481 2.6e-06 55.8 92 45.7
Medtr4g091470 Medicago truncatula HOM05D001554 ORTHO05D001481 2.6e-06 55.8 92 54.3
PSO832G0393 Papaver somniferum HOM05D001554 ORTHO05D001481 2.6e-06 55.8 84 38.1
Phvul.L001662 Phaseolus vulgaris HOM05D001554 ORTHO05D001481 2.6e-06 55.8 84 38.1
VMungo1080G1825 Vigna mungo HOM05D001554 ORTHO05D001481 2.6e-06 55.8 84 38.1
ECA236G0462 Erigeron canadensis HOM05D001554 ORTHO05D001481 3.4e-06 55.5 87 37.9
MD10G1304100 Malus domestica HOM05D001554 ORTHO05D001481 3.4e-06 55.5 92 50.0
Sc21g0002540 Simmondsia chinensis HOM05D001554 ORTHO05D001481 3.4e-06 55.5 75 41.3
Hma1.2p1_1579F.1_g291860 Hydrangea macrophylla HOM05D001554 ORTHO05D001481 4.5e-06 55.1 91 45.1
Sed0020771 Sechium edule HOM05D001554 ORTHO05D001481 4.5e-06 55.1 84 39.3
MSTRG.7280 Avicennia marina HOM05D001554 ORTHO05D001481 5.8e-06 54.7 92 41.3
Cpa.g.sc34.86 Carica papaya HOM05D001554 ORTHO05D001481 5.8e-06 54.7 74 51.4
FAN09G0651 Fragaria x ananassa HOM05D001554 ORTHO05D001481 5.8e-06 54.7 96 47.9
Manes.15G082400 Manihot esculenta HOM05D001554 ORTHO05D001481 5.8e-06 54.7 92 53.3
HPP92_012361 Vanilla planifolia HOM05D001554 ORTHO05D001481 5.8e-06 54.7 108 40.7
GSVIVG01030002001 Vitis vinifera HOM05D001554 ORTHO05D001481 5.8e-06 54.7 64 56.2
Aqoxy1G03899 Aquilegia oxysepala HOM05D001554 ORTHO05D001481 7.6e-06 54.3 74 45.9
Gohir.A01G069200 Gossypium hirsutum HOM05D001554 ORTHO05D001481 7.6e-06 54.3 88 45.5
SalBow7G0147 Salvia bowleyana HOM05D001554 ORTHO05D001481 7.6e-06 54.3 92 37.0
SalBow7G2949 Salvia bowleyana HOM05D001554 ORTHO05D001481 7.6e-06 54.3 92 37.0
CAN.G162.109 Capsicum annuum HOM05D001554 ORTHO05D001481 1.0e-05 53.9 84 44.0
COL.COLO4_09490 Corchorus olitorius HOM05D001554 ORTHO05D001481 1.0e-05 53.9 84 46.4
CsaV3_6G049670 Cucumis sativus L. HOM05D001554 ORTHO05D001481 1.0e-05 53.9 86 41.9
Migut.M01221 Erythranthe guttata HOM05D001554 ORTHO05D001481 1.0e-05 53.9 93 39.8
Manes.12G082500 Manihot esculenta HOM05D001554 ORTHO05D001481 1.0e-05 53.9 104 35.6
Solyc02g079230.3 Solanum lycopersicum HOM05D001554 ORTHO05D001481 1.0e-05 53.9 94 36.2
Sopen02g024050 Solanum pennellii HOM05D001554 ORTHO05D001481 1.0e-05 53.9 94 36.2
SGA_v2.0_scaffold7G03931 Striga asiatica HOM05D001554 ORTHO05D001481 1.0e-05 53.9 96 40.6
TAR629G1051 Trochodendron aralioides HOM05D001554 ORTHO05D001481 1.0e-05 53.9 64 42.2


User provided reference genes

Program Settings