Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 5.6e-49 197.2 94 100.0
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 1.1e-25 119.8 95 61.1
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.5e-25 119.4 96 63.5
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 2.5e-25 118.6 96 62.5
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 1.6e-24 115.9 94 64.9
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 3.7e-24 114.8 96 59.4
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 4.8e-24 114.4 97 57.7
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 1.1e-23 113.2 94 57.4
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 1.1e-23 113.2 94 57.4
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 1.4e-23 112.8 94 53.2
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 3.1e-23 111.7 94 57.4
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 6.9e-23 110.5 94 55.3
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 1.5e-22 109.4 94 53.2
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 2.0e-22 109.0 94 53.2
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 2.6e-22 108.6 94 57.4
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 3.4e-22 108.2 104 51.0
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 5.8e-22 107.5 92 57.6
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 7.6e-22 107.1 94 59.6
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.3e-21 106.3 94 54.3
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 1.7e-21 105.9 94 58.5
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 1.7e-21 105.9 90 58.9
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 1.7e-21 105.9 89 60.7
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 3.8e-21 104.8 94 54.3
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 4.9e-21 104.4 94 55.3
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 1.1e-20 103.2 96 51.0
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 1.4e-20 102.8 94 54.3
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 1.9e-20 102.4 93 53.8
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 3.2e-20 101.7 94 55.3
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 3.2e-20 101.7 92 56.5
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 4.2e-20 101.3 85 60.0
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 7.1e-20 100.5 94 48.9
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 7.1e-20 100.5 94 51.1
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.2e-19 99.8 96 54.2
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 2.1e-19 99.0 94 54.3
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 2.7e-19 98.6 92 52.2
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 3.5e-19 98.2 91 50.5
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 6.0e-19 97.4 94 48.9
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 7.9e-19 97.1 94 54.3
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 1.0e-18 96.7 95 50.5
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 1.0e-18 96.7 94 50.0
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 1.3e-18 96.3 95 49.5
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 1.8e-18 95.9 85 54.1
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 3.0e-18 95.1 94 50.0
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 3.9e-18 94.7 94 50.0
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 5.1e-18 94.4 85 52.9
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 5.1e-18 94.4 95 50.5
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 6.7e-18 94.0 95 49.5
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 8.7e-18 93.6 95 48.4
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 8.7e-18 93.6 97 48.5
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 1.1e-17 93.2 95 49.5
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 1.1e-17 93.2 95 48.4
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 1.9e-17 92.4 94 47.9
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 2.5e-17 92.0 94 50.0
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 3.3e-17 91.7 94 44.7
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 4.3e-17 91.3 94 45.7
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 7.4e-17 90.5 94 45.7
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 7.4e-17 90.5 94 54.3
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 9.7e-17 90.1 92 50.0
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 1.6e-16 89.4 93 49.5
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 2.2e-16 89.0 94 51.1
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 2.8e-16 88.6 95 53.7
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 4.8e-16 87.8 94 46.8
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 8.2e-16 87.0 94 52.1
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 8.2e-16 87.0 94 52.1
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.1e-15 86.7 95 47.4
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.4e-15 86.3 97 49.5
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 1.8e-15 85.9 86 51.2
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.1e-15 85.1 95 47.4
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 5.3e-15 84.3 95 47.4
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 2.6e-14 82.0 95 43.2
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 4.5e-14 81.3 98 48.0
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 1.3e-13 79.7 95 46.3
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 1.3e-13 79.7 95 46.3
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 2.9e-13 78.6 92 45.7
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.8e-13 78.2 98 46.9
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 5.0e-13 77.8 95 47.4
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 8.5e-13 77.0 99 46.5
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.1e-12 76.6 100 45.0
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 1.1e-12 76.6 95 46.3
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 1.9e-12 75.9 94 45.7
ECA246G0551 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.9e-12 75.9 83 54.2
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 3.2e-12 75.1 98 45.9
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 3.2e-12 75.1 98 45.9
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 5.5e-12 74.3 101 42.6
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 5.5e-12 74.3 94 42.6
Sabra13G0119300 Salix brachista HOM05D004838 ORTHO05D005373 7.2e-12 73.9 89 47.2
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 9.4e-12 73.6 97 45.4
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.2e-11 73.2 95 42.1
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.6e-11 72.8 81 50.6
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 2.7e-11 72.0 97 43.3
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 2.7e-11 72.0 88 43.2
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 4.6e-11 71.2 94 40.4
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 4.6e-11 71.2 85 48.2
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 6.1e-11 70.9 94 39.4
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 6.1e-11 70.9 94 39.4
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 7.9e-11 70.5 96 41.7
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 7.9e-11 70.5 97 44.3
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 1.0e-10 70.1 97 44.3
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 1.0e-10 70.1 99 44.4
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 1.4e-10 69.7 94 39.4
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 1.8e-10 69.3 91 39.6
ECA246G1803 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.8e-10 69.3 92 41.3
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 1.8e-10 69.3 94 36.2
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 3.0e-10 68.6 94 39.4
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 3.0e-10 68.6 94 39.4
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 3.0e-10 68.6 94 39.4
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 3.0e-10 68.6 94 39.4
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 3.0e-10 68.6 94 39.4
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 8.8e-10 67.0 94 37.2
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 8.8e-10 67.0 94 37.2
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 1.1e-09 66.6 94 38.3
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 1.5e-09 66.2 98 40.8
ECA246G1879 Erigeron canadensis HOM05D000214 ORTHO05D000131 2.0e-09 65.9 83 47.0
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 2.5e-09 65.5 99 40.4
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 2.5e-09 65.5 99 40.4
ECA246G0483 Erigeron canadensis HOM05D004838 ORTHO05D005373 2.5e-09 65.5 85 47.1
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 3.3e-09 65.1 89 46.1
Sc21g0002480 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.3e-09 65.1 90 43.3
Sc21g0002530 Simmondsia chinensis HOM05D004838 ORTHO05D005373 4.3e-09 64.7 89 43.8
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 7.4e-09 63.9 94 37.2
Lsat_1_v5_gn_3_40020 Lactuca sativa HOM05D004838 ORTHO05D005373 9.7e-09 63.5 74 44.6
Nitab4.5_0011184g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 9.7e-09 63.5 89 41.6
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 9.7e-09 63.5 95 37.9
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 1.7e-08 62.8 96 37.5
Gohir.D05G169000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 4.8e-08 61.2 94 35.1
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 6.3e-08 60.8 97 43.3
Sc21g0002490 Simmondsia chinensis HOM05D004838 ORTHO05D005373 8.2e-08 60.5 89 40.4
Solyc12g005600.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 1.1e-07 60.1 91 42.9
HPP92_001805 Vanilla planifolia HOM05D004838 ORTHO05D005373 1.4e-07 59.7 94 38.3
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 1.8e-07 59.3 103 37.9
Gohir.A05G166000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 2.4e-07 58.9 94 35.1
Gorai.009G174200 Gossypium raimondii HOM05D004838 ORTHO05D005373 3.1e-07 58.5 94 34.0
unitig_27.g24815 Utricularia gibba HOM05D004838 ORTHO05D005373 3.1e-07 58.5 97 41.2
MELO3C013538.2 Cucumis melo HOM05D031423 ORTHO05D034979 4.1e-07 58.2 99 39.4
Migut.H01018 Erythranthe guttata HOM05D004838 ORTHO05D005373 4.1e-07 58.2 88 42.0
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 4.1e-07 58.2 94 35.1
Lsat_1_v5_gn_3_40521 Lactuca sativa HOM05D000831 ORTHO05D000660 4.1e-07 58.2 94 39.4
MBI02_g37327_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 4.1e-07 58.2 93 38.7
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 5.3e-07 57.8 91 35.2
QL05p081093 Quercus lobata HOM05D004838 ORTHO05D005373 5.3e-07 57.8 93 35.5
Thecc.02G170800 Theobroma cacao HOM05D000831 ORTHO05D000660 9.1e-07 57.0 93 36.6
Sc21g0002510 Simmondsia chinensis HOM05D004838 ORTHO05D005373 1.2e-06 56.6 88 40.9
ClCG02G017310 Citrullus lanatus HOM05D031423 ORTHO05D005373 2.0e-06 55.8 89 39.3
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 2.6e-06 55.5 91 36.3
CDE05G2085 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 3.4e-06 55.1 83 38.6
Haze_06585 Corylus avellana HOM05D004838 ORTHO05D005373 3.4e-06 55.1 96 34.4
MBI02_g37326_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 3.4e-06 55.1 83 37.3
Potri.011G042000 Populus trichocarpa HOM05D038532 ORTHO05D005373 4.5e-06 54.7 93 34.4
PGR142G1549 Punica granatum HOM05D000831 ORTHO05D000660 5.9e-06 54.3 83 39.8
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 5.9e-06 54.3 88 40.9
TAR629G3265 Trochodendron aralioides HOM05D000831 ORTHO05D000660 5.9e-06 54.3 93 35.5


User provided reference genes

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