Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 1.3e-111 406.4 199 100.0
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 2.9e-63 245.7 197 64.5
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 3.8e-63 245.4 196 65.8
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 6.5e-63 244.6 171 71.3
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 9.4e-62 240.7 201 64.7
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 1.2e-61 240.4 196 65.3
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 1.6e-61 240.0 196 65.3
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 6.7e-60 234.6 149 71.8
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 8.8e-60 234.2 143 76.2
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 1.3e-58 230.3 193 61.7
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 2.2e-58 229.6 197 60.9
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 8.2e-58 227.6 145 71.0
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 1.1e-57 227.3 194 60.8
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 1.1e-57 227.3 184 64.1
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 1.4e-57 226.9 143 72.7
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 1.8e-57 226.5 195 62.6
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 2.4e-57 226.1 191 62.8
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 3.1e-57 225.7 191 60.7
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 3.1e-57 225.7 139 76.3
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 4.1e-57 225.3 197 60.9
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 4.1e-57 225.3 197 60.9
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 4.1e-57 225.3 146 71.2
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 6.9e-57 224.6 200 61.5
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 6.9e-57 224.6 215 56.3
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 9.1e-57 224.2 168 61.9
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 9.1e-57 224.2 164 67.7
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 9.1e-57 224.2 142 73.2
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 9.1e-57 224.2 177 65.0
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 1.5e-56 223.4 195 62.1
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 2.0e-56 223.0 191 59.7
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 4.5e-56 221.9 202 58.9
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 4.5e-56 221.9 188 62.2
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 4.5e-56 221.9 179 62.0
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 5.9e-56 221.5 200 60.0
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 5.9e-56 221.5 200 60.0
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 5.9e-56 221.5 142 73.2
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 7.7e-56 221.1 169 66.9
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 7.7e-56 221.1 145 73.8
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 2.9e-55 219.2 169 66.3
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 2.9e-55 219.2 169 66.3
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 3.8e-55 218.8 192 59.4
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 5.0e-55 218.4 161 66.5
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 5.0e-55 218.4 149 70.5
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 5.0e-55 218.4 191 57.6
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 8.5e-55 217.6 145 70.3
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 8.5e-55 217.6 141 72.3
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.1e-54 217.2 169 65.7
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 1.4e-54 216.9 143 70.6
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 1.4e-54 216.9 169 61.5
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 1.9e-54 216.5 137 73.0
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 4.2e-54 215.3 162 66.0
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 4.2e-54 215.3 141 73.0
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 5.5e-54 214.9 137 71.5
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 7.2e-54 214.5 138 72.5
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 7.2e-54 214.5 191 57.1
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 9.4e-54 214.2 200 58.5
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 9.4e-54 214.2 180 61.7
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 1.2e-53 213.8 123 78.0
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 2.1e-53 213.0 145 71.0
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 7.9e-53 211.1 137 71.5
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 1.0e-52 210.7 141 68.8
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 1.8e-52 209.9 125 77.6
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 3.0e-52 209.1 168 64.3
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 3.0e-52 209.1 125 76.8
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 3.9e-52 208.8 137 73.0
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 3.9e-52 208.8 137 73.0
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 3.9e-52 208.8 139 69.8
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 3.9e-52 208.8 148 70.9
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 8.8e-52 207.6 141 70.2
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 1.1e-51 207.2 191 59.7
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 1.1e-51 207.2 125 76.0
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 1.1e-51 207.2 125 76.0
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.1e-51 207.2 190 58.4
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 1.5e-51 206.8 174 61.5
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 2.0e-51 206.5 153 66.0
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 2.0e-51 206.5 162 61.1
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 2.0e-51 206.5 132 71.2
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 3.3e-51 205.7 125 75.2
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 4.4e-51 205.3 125 76.0
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 5.7e-51 204.9 193 57.0
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 7.4e-51 204.5 139 67.6
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 7.4e-51 204.5 166 60.8
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 1.3e-50 203.8 137 71.5
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 1.3e-50 203.8 137 71.5
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 1.7e-50 203.4 160 62.5
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 1.7e-50 203.4 177 59.3
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 2.2e-50 203.0 137 71.5
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 2.2e-50 203.0 182 61.5
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 8.2e-50 201.1 137 70.1
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 8.2e-50 201.1 137 70.1
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 8.2e-50 201.1 142 69.0
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 2.4e-49 199.5 147 65.3
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 4.1e-49 198.7 173 59.0
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 2.6e-48 196.1 134 70.1
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 5.9e-48 194.9 195 51.3
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 1.0e-47 194.1 150 60.7
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 1.0e-47 194.1 134 63.4
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 1.5e-46 190.3 176 58.5
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 1.9e-46 189.9 136 66.2
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 2.5e-46 189.5 116 77.6
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 4.2e-46 188.7 116 75.0
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 6.7e-44 181.4 150 60.0
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 3.3e-43 179.1 120 69.2
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 7.5e-43 177.9 187 48.1
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 1.4e-41 173.7 112 67.0
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.8e-41 173.3 112 69.6
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 1.1e-38 164.1 115 67.0
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 1.5e-38 163.7 91 83.5
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 4.0e-36 155.6 143 48.3
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 1.5e-35 153.7 123 63.4
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 3.4e-35 152.5 147 58.5
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 9.8e-35 151.0 134 53.7
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 4.8e-34 148.7 153 58.2
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 1.1e-33 147.5 116 63.8
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 1.8e-33 146.7 99 70.7
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 5.4e-33 145.2 109 63.3
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 1.6e-32 143.7 131 56.5
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 3.5e-32 142.5 149 52.3
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 5.9e-32 141.7 93 69.9
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 1.1e-30 137.5 90 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 5.2e-28 128.6 109 55.0
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 2.0e-27 126.7 84 72.6
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 2.6e-27 126.3 73 79.5
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 3.7e-26 122.5 145 41.4
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 3.1e-25 119.4 115 51.3
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 7.3e-22 108.2 97 50.5
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 2.2e-18 96.7 83 60.2
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 8.3e-18 94.7 92 54.3
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 4.1e-17 92.4 111 42.3
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 1.3e-15 87.4 69 60.9
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 3.9e-15 85.9 112 38.4
Haze_01489 Corylus avellana HOM05D005819 ORTHO05D006780 2.6e-11 73.2 89 46.1
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.0e-08 63.5 43 65.1
Actinidia30496 Actinidia chinensis HOM05D005819 ORTHO05D006780 6.0e-08 62.0 37 78.4
Lsat_1_v5_gn_8_145740 Lactuca sativa HOM05D005244 ORTHO05D006780 1.1e-06 57.8 48 62.5


User provided reference genes

Program Settings