Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 3.0e-99 365.2 179 100.0
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 9.5e-98 360.1 179 98.9
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 1.8e-88 329.3 174 94.3
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 9.9e-71 270.4 166 78.9
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 9.9e-71 270.4 166 78.9
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 2.2e-70 269.2 163 79.8
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 2.9e-70 268.9 177 75.1
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 4.2e-69 265.0 172 74.4
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 7.9e-68 260.8 166 77.1
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 3.9e-67 258.5 166 76.5
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.5e-66 256.5 166 75.3
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.5e-66 256.5 166 75.3
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 3.3e-66 255.4 163 76.7
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 4.3e-66 255.0 166 75.9
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 5.6e-66 254.6 165 75.8
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 9.6e-66 253.8 159 75.5
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 1.1e-64 250.4 169 72.8
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 1.4e-64 250.0 160 73.1
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 9.0e-64 247.3 164 73.8
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 3.2e-61 238.8 172 65.7
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 6.0e-60 234.6 165 69.7
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 1.0e-59 233.8 181 65.2
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 8.7e-59 230.7 158 69.6
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 1.5e-58 229.9 167 67.7
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 1.5e-58 229.9 167 69.5
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 2.8e-57 225.7 167 65.9
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 3.7e-57 225.3 169 66.9
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 4.8e-57 224.9 157 68.2
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 6.2e-57 224.6 167 64.7
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 6.2e-57 224.6 177 63.3
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 1.8e-56 223.0 169 64.5
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 2.4e-56 222.6 167 64.1
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 4.0e-56 221.9 169 65.7
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 5.3e-56 221.5 163 66.3
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 3.4e-55 218.8 174 64.9
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 1.7e-54 216.5 171 63.7
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 1.7e-54 216.5 174 64.4
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 8.4e-54 214.2 174 62.6
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.4e-53 213.4 167 61.1
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 7.1e-53 211.1 167 62.3
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 7.1e-53 211.1 167 60.5
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 2.7e-52 209.1 167 62.3
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 4.6e-52 208.4 164 64.0
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 6.1e-52 208.0 177 61.0
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 6.1e-52 208.0 161 64.0
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 3.0e-51 205.7 135 73.3
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 3.9e-51 205.3 164 63.4
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 3.9e-51 205.3 162 64.8
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 1.5e-50 203.4 161 64.0
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 4.3e-50 201.8 169 62.7
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 5.7e-50 201.4 166 61.4
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 7.4e-50 201.1 162 61.7
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 1.6e-49 199.9 171 60.8
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 8.2e-49 197.6 148 68.2
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 8.2e-49 197.6 166 60.8
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 1.1e-48 197.2 166 60.8
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.4e-48 196.8 173 60.7
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 1.8e-48 196.4 174 58.6
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 1.8e-48 196.4 174 58.6
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 1.8e-48 196.4 166 59.6
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 2.4e-48 196.1 173 60.7
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 3.1e-48 195.7 174 58.6
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 4.1e-48 195.3 174 58.0
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 4.1e-48 195.3 172 57.6
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 5.3e-48 194.9 174 58.0
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 9.0e-48 194.1 174 57.5
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 9.0e-48 194.1 174 56.9
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 9.0e-48 194.1 174 57.5
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 9.0e-48 194.1 168 60.7
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 9.0e-48 194.1 171 59.1
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 1.2e-47 193.7 174 57.5
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.2e-47 193.7 180 56.1
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.2e-47 193.7 180 56.1
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 1.2e-47 193.7 162 58.6
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 2.6e-47 192.6 166 60.2
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 2.6e-47 192.6 166 60.2
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 3.4e-47 192.2 166 59.6
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 4.5e-47 191.8 163 62.0
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 1.0e-46 190.7 177 57.1
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 1.0e-46 190.7 171 57.9
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 1.0e-46 190.7 171 57.9
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 1.3e-46 190.3 175 56.6
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 1.3e-46 190.3 163 60.7
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 1.7e-46 189.9 159 61.0
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 3.8e-46 188.7 164 59.1
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 3.8e-46 188.7 163 60.1
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 8.5e-46 187.6 162 59.9
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.1e-45 187.2 163 57.7
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 1.4e-45 186.8 169 55.6
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 1.9e-45 186.4 167 55.7
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 1.9e-45 186.4 163 57.7
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.9e-45 186.4 163 57.7
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.9e-45 186.4 163 57.7
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.9e-45 186.4 163 57.7
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 2.5e-45 186.0 163 58.9
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 1.7e-41 173.3 171 52.0
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 4.8e-41 171.8 160 53.1
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 4.8e-41 171.8 147 60.5
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 1.4e-40 170.2 150 58.7
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 1.8e-40 169.9 151 58.9
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 7.7e-39 164.5 133 60.2
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.4e-37 160.2 161 51.6
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 1.2e-36 157.1 95 82.1
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 1.1e-34 150.6 143 55.9
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 2.6e-34 149.4 133 57.9
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 5.7e-34 148.3 117 64.1
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 7.0e-32 141.4 128 57.0
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 2.6e-31 139.4 94 72.3
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 2.9e-30 136.0 117 60.7
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 6.5e-30 134.8 168 45.2
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 8.0e-28 127.9 105 60.0
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 3.5e-23 112.5 117 52.1
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 5.5e-21 105.1 187 35.3
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 6.8e-19 98.2 109 49.5
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 6.8e-19 98.2 109 49.5
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 6.8e-19 98.2 109 49.5
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 6.8e-19 98.2 109 49.5
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 6.8e-19 98.2 109 49.5
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 1.2e-15 87.4 136 40.4
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 1.8e-11 73.6 55 65.5
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 2.0e-10 70.1 51 64.7
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 2.6e-10 69.7 51 64.7
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 2.6e-10 69.7 51 64.7
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 3.4e-10 69.3 52 63.5
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 4.4e-10 68.9 51 64.7
HanXRQChr05g0139891 Helianthus annuus HOM05D001733 ORTHO05D001882 1.1e-08 64.3 53 58.5
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 1.4e-08 63.9 51 56.9
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 2.7e-07 59.7 47 55.3
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 2.7e-07 59.7 80 46.2


User provided reference genes

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