Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 5.7e-48 193.7 87 100.0
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 3.5e-45 184.5 87 95.4
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 1.1e-43 179.5 87 90.8
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 5.6e-43 177.2 88 90.9
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 1.2e-42 176.0 87 89.7
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 2.1e-42 175.3 87 90.8
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 4.7e-42 174.1 87 88.5
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 4.7e-42 174.1 87 87.4
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.0e-41 172.9 86 88.4
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 1.0e-41 172.9 88 88.6
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 1.0e-41 172.9 88 89.8
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 1.0e-41 172.9 87 89.7
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 1.8e-41 172.2 88 88.6
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 1.8e-41 172.2 88 89.8
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 1.8e-41 172.2 88 89.8
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 3.1e-41 171.4 87 86.2
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 4.0e-41 171.0 87 88.5
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 4.0e-41 171.0 88 89.8
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 4.0e-41 171.0 84 89.3
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 4.0e-41 171.0 84 89.3
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 4.0e-41 171.0 84 89.3
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 4.0e-41 171.0 88 88.6
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 5.2e-41 170.6 83 89.2
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 5.2e-41 170.6 88 88.6
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 5.2e-41 170.6 88 86.4
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 5.2e-41 170.6 87 87.4
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.9e-41 169.9 85 87.1
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 8.9e-41 169.9 85 89.4
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 8.9e-41 169.9 85 89.4
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 1.5e-40 169.1 83 88.0
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 2.0e-40 168.7 88 88.6
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 2.0e-40 168.7 88 88.6
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 2.6e-40 168.3 83 86.7
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 2.6e-40 168.3 86 86.0
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 3.4e-40 167.9 87 86.2
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 4.4e-40 167.5 88 87.5
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.4e-40 167.5 88 87.5
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 4.4e-40 167.5 87 86.2
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 4.4e-40 167.5 88 88.6
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 5.8e-40 167.2 83 85.5
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 5.8e-40 167.2 88 85.2
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 7.5e-40 166.8 88 87.5
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 7.5e-40 166.8 85 89.4
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 9.8e-40 166.4 83 85.5
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 1.3e-39 166.0 83 85.5
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.3e-39 166.0 88 86.4
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 2.2e-39 165.2 87 83.9
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 2.9e-39 164.9 82 87.8
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 3.7e-39 164.5 87 85.1
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 4.9e-39 164.1 85 87.1
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 4.9e-39 164.1 87 83.9
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 4.9e-39 164.1 88 84.1
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 6.4e-39 163.7 88 86.4
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 6.4e-39 163.7 85 85.9
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 6.4e-39 163.7 85 85.9
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 8.3e-39 163.3 82 86.6
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 8.3e-39 163.3 82 87.8
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.9e-38 162.2 87 83.9
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 5.4e-38 160.6 88 85.2
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.6e-37 159.1 87 82.8
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 1.6e-37 159.1 87 81.6
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 4.6e-37 157.5 87 85.1
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 4.6e-37 157.5 88 84.1
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 6.0e-37 157.1 86 84.9
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 6.0e-37 157.1 88 84.1
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 6.0e-37 157.1 88 84.1
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 6.0e-37 157.1 88 84.1
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 7.8e-37 156.8 87 83.9
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 7.8e-37 156.8 87 83.9
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 1.0e-36 156.4 84 83.3
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 1.0e-36 156.4 84 83.3
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.3e-36 156.0 86 83.7
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 1.3e-36 156.0 86 80.2
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 1.7e-36 155.6 88 83.0
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 1.7e-36 155.6 88 83.0
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 1.7e-36 155.6 87 82.8
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 1.7e-36 155.6 88 83.0
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 1.7e-36 155.6 87 82.8
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 1.7e-36 155.6 87 82.8
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 1.7e-36 155.6 88 83.0
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 2.3e-36 155.2 111 67.6
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 3.0e-36 154.8 83 81.9
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 6.6e-36 153.7 85 81.2
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 6.6e-36 153.7 85 81.2
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 6.6e-36 153.7 85 81.2
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 6.6e-36 153.7 85 81.2
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 3.3e-35 151.4 90 80.0
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 4.3e-35 151.0 83 83.1
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 9.5e-35 149.8 79 82.3
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 9.5e-35 149.8 80 78.8
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 2.1e-34 148.7 85 77.6
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 6.2e-34 147.1 83 78.3
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.1e-33 146.4 86 79.1
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 2.3e-33 145.2 79 78.5
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 5.2e-33 144.1 79 82.3
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 3.4e-32 141.4 75 78.7
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 6.4e-31 137.1 67 88.1
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 1.4e-30 136.0 64 92.2
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 1.4e-30 136.0 63 92.1
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 1.9e-30 135.6 87 72.4
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 2.1e-29 132.1 64 90.6
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 5.6e-27 124.0 64 79.7
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 1.1e-25 119.8 64 84.4
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 1.4e-22 109.4 52 88.5
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 3.9e-20 101.3 50 86.0
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 1.2e-18 96.3 64 64.1
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 4.2e-14 81.3 61 59.0
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 9.2e-14 80.1 58 60.3
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 7.8e-13 77.0 39 87.2
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 5.1e-12 74.3 38 92.1
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.9e-11 72.4 39 79.5
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 1.8e-09 65.9 42 76.2
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 7.6e-08 60.5 41 70.7


User provided reference genes

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