Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 9.3e-87 323.6 168 100.0
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 3.0e-21 105.9 161 42.2
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 6.3e-19 98.2 163 42.9
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 1.4e-18 97.1 159 39.0
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 2.0e-17 93.2 157 36.3
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 2.7e-17 92.8 156 37.8
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 3.5e-17 92.4 156 37.2
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 4.5e-17 92.0 156 37.8
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 5.9e-17 91.7 159 43.4
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 7.7e-17 91.3 156 37.8
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 1.7e-16 90.1 159 35.8
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 2.3e-16 89.7 158 35.4
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 2.3e-16 89.7 157 35.0
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 2.9e-16 89.4 155 38.1
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 2.9e-16 89.4 156 36.5
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 5.0e-16 88.6 156 37.2
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 8.6e-16 87.8 159 37.7
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 8.6e-16 87.8 150 34.0
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 1.5e-15 87.0 156 36.5
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 1.9e-15 86.7 150 37.3
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 1.9e-15 86.7 157 34.4
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.5e-15 86.3 155 37.4
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 3.3e-15 85.9 161 34.8
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 5.6e-15 85.1 154 39.0
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 5.6e-15 85.1 158 38.6
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 7.3e-15 84.7 157 35.7
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 9.5e-15 84.3 158 37.3
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 9.5e-15 84.3 156 37.8
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 9.5e-15 84.3 160 38.8
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 1.2e-14 84.0 157 35.7
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 1.2e-14 84.0 155 36.1
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.2e-14 84.0 153 35.9
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.2e-14 84.0 153 35.9
Lsat_1_v5_gn_5_125321 Lactuca sativa HOM05D005769 ORTHO05D006851 1.2e-14 84.0 158 41.1
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.1e-14 83.2 155 36.1
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 2.1e-14 83.2 155 38.1
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 2.8e-14 82.8 160 38.1
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 2.8e-14 82.8 158 38.6
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 3.6e-14 82.4 157 34.4
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 3.6e-14 82.4 157 35.0
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 4.7e-14 82.0 155 34.8
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 6.1e-14 81.6 154 37.0
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 8.0e-14 81.3 157 33.8
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 8.0e-14 81.3 160 34.4
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 1.0e-13 80.9 156 34.0
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 1.0e-13 80.9 156 33.3
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 1.0e-13 80.9 158 32.9
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 1.0e-13 80.9 157 34.4
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 1.0e-13 80.9 150 33.3
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.4e-13 80.5 156 32.1
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.3e-13 79.7 156 35.3
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 2.3e-13 79.7 156 35.3
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 5.2e-13 78.6 157 33.1
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 5.2e-13 78.6 157 35.7
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 6.8e-13 78.2 156 34.6
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 8.9e-13 77.8 157 32.5
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 8.9e-13 77.8 157 32.5
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 8.9e-13 77.8 157 35.7
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 1.5e-12 77.0 159 34.6
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 2.0e-12 76.6 152 33.6
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 4.4e-12 75.5 150 34.7
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 4.4e-12 75.5 160 35.0
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 4.4e-12 75.5 158 33.5
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 4.4e-12 75.5 168 35.7
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 5.7e-12 75.1 150 33.3
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 5.7e-12 75.1 172 36.0
DCAR_021174 Daucus carota HOM05D005769 ORTHO05D006851 7.5e-12 74.7 155 36.8
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 9.8e-12 74.3 158 33.5
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 9.8e-12 74.3 157 34.4
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 9.8e-12 74.3 157 34.4
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 9.8e-12 74.3 151 36.4
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 1.3e-11 73.9 158 34.2
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 3.7e-11 72.4 155 33.5
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 3.7e-11 72.4 150 32.7
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 4.9e-11 72.0 159 34.0
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 4.9e-11 72.0 152 32.9
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 8.3e-11 71.2 70 51.4
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 1.8e-10 70.1 156 31.4
HanXRQChr10g0305811 Helianthus annuus HOM05D005769 ORTHO05D006851 1.8e-10 70.1 150 41.3
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 2.4e-10 69.7 158 32.9
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 2.4e-10 69.7 159 35.2
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 3.2e-10 69.3 151 31.1
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 7.0e-10 68.2 149 30.2
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 9.2e-10 67.8 152 33.6
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 9.2e-10 67.8 151 35.1
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 1.2e-09 67.4 156 34.6
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 2.0e-09 66.6 157 36.3
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.7e-09 66.2 153 32.7
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 2.7e-09 66.2 159 32.1
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 2.7e-09 66.2 156 34.6
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 3.5e-09 65.9 151 32.5
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 4.6e-09 65.5 151 30.5
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 7.8e-09 64.7 160 33.8
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 1.0e-08 64.3 150 35.3
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.3e-08 63.9 156 35.3
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.3e-08 63.9 170 30.0
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 1.7e-08 63.5 159 32.7
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 5.0e-08 62.0 154 30.5
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 5.0e-08 62.0 154 33.1
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 8.6e-08 61.2 179 30.2
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 1.1e-07 60.8 150 33.3
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.1e-07 60.8 157 33.1
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 1.9e-07 60.1 160 31.2
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 2.5e-07 59.7 160 29.4
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 2.5e-07 59.7 161 31.7
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 3.3e-07 59.3 168 29.2
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 3.3e-07 59.3 160 29.4
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 3.3e-07 59.3 160 29.4
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 3.3e-07 59.3 160 29.4
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 3.3e-07 59.3 155 31.6
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 5.6e-07 58.5 159 28.3
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 1.2e-06 57.4 180 29.4
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 1.6e-06 57.0 187 27.8
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 2.1e-06 56.6 154 32.5
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 2.8e-06 56.2 187 27.8
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 3.6e-06 55.8 153 28.1
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 8.0e-06 54.7 152 29.6
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 8.0e-06 54.7 151 35.8


User provided reference genes

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