Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g04720 Coffea canephora HOM05D000361 ORTHO05D004243 1.2e-101 373.2 192 100.0
Cc11_g04100 Coffea canephora HOM05D000361 ORTHO05D004243 1.5e-93 346.3 192 95.3
Cc02_g33820 Coffea canephora HOM05D000361 ORTHO05D004243 5.8e-93 344.4 194 92.8
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 1.1e-88 330.1 188 92.0
Cc02_g26000 Coffea canephora HOM05D000361 ORTHO05D004243 3.1e-86 322.0 191 90.6
Cc04_g08620 Coffea canephora HOM05D000361 ORTHO05D004243 1.5e-85 319.7 191 90.1
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.3e-73 280.0 188 78.2
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 2.3e-73 279.3 188 77.1
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 1.5e-72 276.6 188 76.1
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 2.5e-72 275.8 187 78.1
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 9.6e-72 273.9 188 77.7
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 2.1e-71 272.7 188 76.1
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 3.7e-71 271.9 188 77.1
Cpa.g.sc18.42 Carica papaya HOM05D000361 ORTHO05D004243 4.8e-71 271.6 188 75.0
Dinv33114 Davidia involucrata HOM05D000361 ORTHO05D004243 1.1e-70 270.4 188 77.1
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 1.1e-70 270.4 188 75.5
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 1.8e-70 269.6 188 73.9
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 1.8e-70 269.6 188 73.9
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 1.8e-70 269.6 188 73.9
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 2.4e-70 269.2 188 73.9
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 4.0e-70 268.5 188 73.4
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 5.3e-70 268.1 187 73.8
ATR0796G177 Amborella trichopoda HOM05D000361 ORTHO05D004243 6.9e-70 267.7 188 72.9
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 6.9e-70 267.7 188 75.0
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 1.2e-69 266.9 187 74.3
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 1.2e-69 266.9 197 73.1
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 2.0e-69 266.2 188 73.4
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 2.0e-69 266.2 188 73.4
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 3.4e-69 265.4 185 75.1
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 4.5e-69 265.0 188 72.9
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 5.8e-69 264.6 188 72.3
Duzib133G0716 Durio zibethinus HOM05D000361 ORTHO05D004243 5.8e-69 264.6 188 73.9
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 7.6e-69 264.2 188 72.9
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 1.0e-68 263.8 185 74.1
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 1.0e-68 263.8 188 72.3
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 1.7e-68 263.1 188 73.9
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 1.7e-68 263.1 188 73.9
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 2.2e-68 262.7 188 72.9
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 2.9e-68 262.3 188 73.4
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 3.8e-68 261.9 188 73.4
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 8.4e-68 260.8 188 72.3
Atru.chr5.1003 Acer truncatum HOM05D000361 ORTHO05D004243 1.1e-67 260.4 188 70.7
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 1.1e-67 260.4 186 73.1
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 1.4e-67 260.0 189 74.6
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 1.4e-67 260.0 188 72.9
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 1.9e-67 259.6 188 72.3
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 9.3e-67 257.3 185 73.0
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 4.6e-66 255.0 188 73.4
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 6.0e-66 254.6 185 70.8
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 6.0e-66 254.6 188 73.4
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.0e-65 253.8 188 69.7
Nitab4.5_0011075g0020 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.3e-65 253.4 192 69.8
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 2.3e-65 252.7 188 71.8
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 2.3e-65 252.7 185 71.9
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 3.0e-65 252.3 188 69.7
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 3.0e-65 252.3 186 70.4
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 3.9e-65 251.9 188 69.1
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 5.1e-65 251.5 188 70.7
Manes.05G003200 Manihot esculenta HOM05D000361 ORTHO05D004243 6.7e-65 251.1 190 68.9
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 1.1e-64 250.4 188 69.1
Gohir.D11G114600 Gossypium hirsutum HOM05D000361 ORTHO05D004243 4.3e-64 248.4 188 68.6
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 5.7e-64 248.1 188 69.7
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 1.3e-63 246.9 186 69.4
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 2.2e-63 246.1 186 69.4
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 2.8e-63 245.7 185 68.6
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 2.8e-63 245.7 186 68.8
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 4.8e-63 245.0 185 69.7
Potri.014G120900 Populus trichocarpa HOM05D000361 ORTHO05D004243 2.4e-62 242.7 188 69.1
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 4.1e-62 241.9 188 66.5
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 4.1e-62 241.9 185 67.6
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 4.1e-62 241.9 185 68.1
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 5.3e-62 241.5 185 69.2
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 1.5e-61 240.0 184 67.9
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 2.6e-61 239.2 188 68.1
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 4.5e-61 238.4 187 66.8
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 5.9e-61 238.0 188 68.1
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 1.0e-60 237.3 187 66.3
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 1.3e-60 236.9 184 65.8
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 1.7e-60 236.5 187 65.2
COL.COLO4_23233 Corchorus olitorius HOM05D000361 ORTHO05D004243 1.7e-60 236.5 188 65.4
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 2.2e-60 236.1 157 77.1
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 2.9e-60 235.7 187 65.2
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 2.9e-60 235.7 218 59.6
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 5.0e-60 235.0 187 64.7
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 5.0e-60 235.0 159 74.2
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 8.5e-60 234.2 188 66.5
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 1.9e-59 233.0 187 65.8
ClCG10G006350 Citrullus lanatus HOM05D000361 ORTHO05D004243 3.2e-59 232.3 157 73.2
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 4.2e-59 231.9 157 73.9
Nitab4.5_0001301g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 5.5e-59 231.5 188 67.0
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 5.5e-59 231.5 154 76.0
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 5.5e-59 231.5 188 66.5
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 7.2e-59 231.1 188 65.4
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 9.4e-59 230.7 188 67.6
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 1.2e-58 230.3 188 67.6
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 4.6e-58 228.4 188 64.4
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 4.6e-58 228.4 185 67.0
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 4.6e-58 228.4 188 66.5
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 1.4e-57 226.9 188 63.8
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 2.5e-56 222.6 189 65.1
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 2.5e-56 222.6 188 64.9
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 4.3e-56 221.9 188 64.4
SalBow2G3626 Salvia bowleyana HOM05D000361 ORTHO05D004243 9.7e-56 220.7 190 61.6
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 1.1e-54 217.2 186 65.6
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 1.8e-54 216.5 158 69.0
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 2.4e-54 216.1 185 64.9
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 6.9e-54 214.5 188 63.3
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 7.7e-53 211.1 187 62.0
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 7.7e-53 211.1 187 62.0
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 2.9e-52 209.1 187 61.5
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 2.9e-52 209.1 187 61.5
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 2.9e-52 209.1 187 61.5
Oeu041216.1 Olea europaea HOM05D000361 ORTHO05D004243 8.5e-52 207.6 157 68.8
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 1.1e-51 207.2 187 61.5
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 2.5e-51 206.1 188 61.7
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 4.2e-51 205.3 188 59.6
HPP92_004593 Vanilla planifolia HOM05D000361 ORTHO05D004243 4.2e-51 205.3 196 54.6
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 9.4e-51 204.1 157 66.9
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 7.9e-50 201.1 181 62.4
unitig_736.g22938 Utricularia gibba HOM05D000361 ORTHO05D004243 5.1e-49 198.4 157 65.6
Cc03_g12210 Coffea canephora HOM05D000361 ORTHO05D004243 1.5e-48 196.8 111 91.9
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 9.7e-48 194.1 187 59.9
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 2.2e-47 193.0 200 58.5
AagrBONN_evm.TU.Sc2ySwM_228.3730 Anthoceros agrestis HOM05D000361 ORTHO05D004243 8.2e-47 191.0 186 54.3
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 7.0e-46 188.0 189 57.1
VMungo1383G3239 Vigna mungo HOM05D000361 ORTHO05D004243 2.9e-44 182.6 160 60.0
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 9.7e-40 167.5 193 50.3
Mapoly0167s0022 Marchantia polymorpha HOM05D000361 ORTHO05D004243 2.2e-39 166.4 194 47.9
Pp3c12_23510 Physcomitrium patens HOM05D000361 ORTHO05D004243 6.3e-39 164.9 191 46.1
Cc00_g34370 Coffea canephora HOM05D000361 ORTHO05D004243 4.1e-38 162.2 94 89.4
Lsat_1_v5_gn_1_35460 Lactuca sativa HOM05D000361 ORTHO05D004243 5.3e-38 161.8 191 52.9
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 2.0e-37 159.8 108 69.4
Zm00001eb056500 Zea mays HOM05D000361 ORTHO05D004243 4.5e-37 158.7 184 49.5
Lj2A1205T44 Lonicera japonica HOM05D000361 ORTHO05D004243 6.5e-36 154.8 244 45.1
SMO116G0335 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 8.5e-36 154.5 187 47.6
SMO195G0031 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 8.5e-36 154.5 187 47.6
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 1.2e-34 150.6 157 54.1
Pp3c3_36800 Physcomitrium patens HOM05D000361 ORTHO05D004243 2.2e-31 139.8 191 40.8
DCAR_005760 Daucus carota HOM05D000361 ORTHO05D004243 8.2e-31 137.9 115 60.0
Lalb_Chr15g0078161 Lupinus albus HOM05D000361 ORTHO05D004243 1.4e-30 137.1 110 63.6
Oeu049914.1 Olea europaea HOM05D000361 ORTHO05D004243 8.5e-28 127.9 117 55.6
CBR_g48220 Chara braunii HOM05D000361 ORTHO05D004243 1.5e-27 127.1 240 35.4
COL.COLO4_26725 Corchorus olitorius HOM05D000361 ORTHO05D004243 1.8e-25 120.2 96 56.2
Cc00_g34360 Coffea canephora HOM05D000361 ORTHO05D004243 6.3e-23 111.7 70 85.7
BcaC04g24029 Brassica carinata HOM05D000361 ORTHO05D004243 1.2e-21 107.5 113 53.1
Dinv10096 Davidia involucrata HOM05D000361 ORTHO05D004243 4.0e-17 92.4 55 81.8
Lalb_Chr15g0078171 Lupinus albus HOM05D000361 ORTHO05D004243 9.8e-16 87.8 76 63.2
SEGI_09541 Sequoiadendron giganteum HOM05D000361 ORTHO05D004243 4.9e-15 85.5 71 63.4
Glyma.19G216151 Glycine max HOM05D000361 ORTHO05D004243 3.1e-14 82.8 88 54.5
Actinidia04687 Actinidia chinensis HOM05D000361 ORTHO05D004243 9.2e-14 81.3 68 64.7
Actinidia27762 Actinidia chinensis HOM05D000361 ORTHO05D004243 9.2e-14 81.3 68 64.7
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 5.6e-11 72.0 66 57.6
SHI15042 Sapria himalayana HOM05D000361 ORTHO05D004243 7.3e-11 71.6 117 41.9
Actinidia04728 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.0e-09 67.8 56 62.5
Cre09.g404650 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D004243 2.2e-07 60.1 130 30.0
Dinv10095 Davidia involucrata HOM05D000361 ORTHO05D004243 1.4e-06 57.4 36 80.6


User provided reference genes

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