Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03780 Coffea canephora HOM05D001083 ORTHO05D022300 1.7e-73 279.3 140 100.0
Cc10_g15670 Coffea canephora HOM05D001083 ORTHO05D006562 8.9e-51 203.8 104 99.0
Glyma.06G094300 Glycine max HOM05D001083 ORTHO05D006562 2.2e-49 199.1 104 94.2
Lalb_Chr11g0065091 Lupinus albus HOM05D001083 ORTHO05D006562 4.9e-49 198.0 104 94.2
Nitab4.5_0000131g0420 Nicotiana tabacum HOM05D001083 ORTHO05D006562 4.9e-49 198.0 104 93.3
CiPaw.07G167500 Carya illinoinensis HOM05D001083 ORTHO05D006562 6.4e-49 197.6 104 94.2
Glyma.02G212600 Glycine max HOM05D001083 ORTHO05D006562 6.4e-49 197.6 104 94.2
Peaxi162Scf00281g00319 Petunia axillaris HOM05D001083 ORTHO05D006562 8.4e-49 197.2 104 93.3
Manes.18G060600 Manihot esculenta HOM05D001083 ORTHO05D006562 1.4e-48 196.4 104 93.3
Potri.002G104000 Populus trichocarpa HOM05D001083 ORTHO05D006562 1.4e-48 196.4 104 92.3
VMungo0647G1287 Vigna mungo HOM05D001083 ORTHO05D006562 1.4e-48 196.4 104 92.3
arahy.Tifrunner.gnm1.ann1.R1F113 Arachis hypogaea HOM05D001083 ORTHO05D006562 1.9e-48 196.1 104 93.3
LjContig00408g0023356 Lotus japonicus HOM05D001083 ORTHO05D006562 1.9e-48 196.1 104 93.3
TWI12G0831 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 1.9e-48 196.1 104 94.2
arahy.Tifrunner.gnm1.ann1.4HU4LR Arachis hypogaea HOM05D001083 ORTHO05D006562 2.4e-48 195.7 104 92.3
Glyma.04G092400 Glycine max HOM05D001083 ORTHO05D006562 3.2e-48 195.3 104 93.3
MD08G1194100 Malus domestica HOM05D001083 ORTHO05D006562 3.2e-48 195.3 104 93.3
Nitab4.5_0003300g0010 Nicotiana tabacum HOM05D001083 ORTHO05D006562 3.2e-48 195.3 104 91.3
Phvul.009G143550 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 3.2e-48 195.3 104 91.3
CsaV3_2G030420 Cucumis sativus L. HOM05D001083 ORTHO05D006562 4.1e-48 194.9 104 91.3
Oeu016836.1 Olea europaea HOM05D001083 ORTHO05D006562 4.1e-48 194.9 104 91.3
Haze_22337 Corylus avellana HOM05D001083 ORTHO05D006562 5.4e-48 194.5 104 91.3
Eucgr.F02133 Eucalyptus grandis HOM05D001083 ORTHO05D006562 5.4e-48 194.5 104 93.3
Actinidia30816 Actinidia chinensis HOM05D001083 ORTHO05D006562 7.1e-48 194.1 104 91.3
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 7.1e-48 194.1 102 91.2
Lj1g0024653 Lotus japonicus HOM05D001083 ORTHO05D006562 7.1e-48 194.1 104 92.3
Prupe.1G528400 Prunus persica HOM05D001083 ORTHO05D006562 7.1e-48 194.1 104 93.3
TPR.G28355 Trifolium pratense HOM05D001083 ORTHO05D006562 7.1e-48 194.1 104 90.4
Ca_05403_v3 Cicer arietinum L. HOM05D001083 ORTHO05D006562 9.2e-48 193.7 104 91.3
MELO3C011104.2 Cucumis melo HOM05D001083 ORTHO05D006562 9.2e-48 193.7 104 90.4
MBI06_g36047_MAGBIO Magnolia biondii HOM05D001083 ORTHO05D006562 9.2e-48 193.7 104 91.3
Medtr5g065880 Medicago truncatula HOM05D001083 ORTHO05D006562 9.2e-48 193.7 104 90.4
VMungo1309G2048 Vigna mungo HOM05D001083 ORTHO05D006562 9.2e-48 193.7 104 90.4
Lalb_Chr08g0242431 Lupinus albus HOM05D001083 ORTHO05D006562 1.2e-47 193.4 104 91.3
Phvul.008G180200 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 1.2e-47 193.4 104 91.3
GSVIVG01009147001 Vitis vinifera HOM05D001083 ORTHO05D006562 1.6e-47 193.0 104 92.3
HanXRQChr09g0250891 Helianthus annuus HOM05D001083 ORTHO05D006562 2.1e-47 192.6 104 90.4
Ciclev10000603m.g Citrus clementina HOM05D001083 ORTHO05D006562 2.7e-47 192.2 104 91.3
Dinv44842 Davidia involucrata HOM05D001083 ORTHO05D006562 2.7e-47 192.2 104 91.3
Duzib041G0775 Durio zibethinus HOM05D001083 ORTHO05D006562 2.7e-47 192.2 104 91.3
MD15G1382200 Malus domestica HOM05D001083 ORTHO05D006562 2.7e-47 192.2 104 92.3
Duzib116G0753 Durio zibethinus HOM05D001083 ORTHO05D006562 4.6e-47 191.4 104 89.4
TWI36G0898 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 4.6e-47 191.4 104 90.4
Gorai.009G230800 Gossypium raimondii HOM05D001083 ORTHO05D006562 6.0e-47 191.0 104 90.4
QL09p017286 Quercus lobata HOM05D001083 ORTHO05D006562 6.0e-47 191.0 103 91.3
RcHm_v2.0_Chr7g0237321 Rosa chinensis HOM05D001083 ORTHO05D006562 7.8e-47 190.7 102 90.2
FvH4_5g35680 Fragaria vesca HOM05D001083 ORTHO05D006562 1.0e-46 190.3 104 90.4
FAN08G3511 Fragaria x ananassa HOM05D001083 ORTHO05D006562 1.0e-46 190.3 104 90.4
FAN18G1491 Fragaria x ananassa HOM05D001083 ORTHO05D006562 1.0e-46 190.3 104 90.4
PGR031G0272 Punica granatum HOM05D001083 ORTHO05D006562 1.0e-46 190.3 104 90.4
ATR0022G035 Amborella trichopoda HOM05D001083 ORTHO05D006562 1.3e-46 189.9 104 87.5
DCAR_009571 Daucus carota HOM05D001083 ORTHO05D006562 1.3e-46 189.9 104 89.4
Gohir.A05G220900 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.3e-46 189.9 104 89.4
SGA_v2.0_scaffold28G11891 Striga asiatica HOM05D001083 ORTHO05D006562 1.3e-46 189.9 102 89.2
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 1.7e-46 189.5 100 91.0
FAN13G1737 Fragaria x ananassa HOM05D001083 ORTHO05D006562 1.7e-46 189.5 104 89.4
Rhsim06G0073600 Rhododendron simsii HOM05D001083 ORTHO05D006562 1.7e-46 189.5 104 88.5
Hund16868 Selenicereus undatus HOM05D001083 ORTHO05D006562 1.7e-46 189.5 104 88.5
CANSAT25G1784 Cannabis sativa HOM05D001083 ORTHO05D006562 2.3e-46 189.1 104 88.5
Sed0003733 Sechium edule HOM05D001083 ORTHO05D006562 2.3e-46 189.1 104 87.5
Thecc.08G068600 Theobroma cacao HOM05D001083 ORTHO05D006562 2.3e-46 189.1 104 89.4
Nn5g29925 Nelumbo nucifera HOM05D001083 ORTHO05D001637 3.0e-46 188.7 101 90.1
THA.LOC104800044 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 3.0e-46 188.7 104 88.5
Atru.chr13.1040 Acer truncatum HOM05D001083 ORTHO05D006562 3.9e-46 188.3 104 89.4
CAN.G1375.13 Capsicum annuum HOM05D001083 ORTHO05D006562 3.9e-46 188.3 104 88.5
FAN04G2240 Fragaria x ananassa HOM05D001083 ORTHO05D006562 3.9e-46 188.3 104 89.4
PSO170G6218 Papaver somniferum HOM05D001083 ORTHO05D006562 3.9e-46 188.3 102 87.3
Sed0007911 Sechium edule HOM05D001083 ORTHO05D006562 5.1e-46 188.0 102 88.2
AUR62027860 Chenopodium quinoa HOM05D001083 ORTHO05D006562 6.6e-46 187.6 104 87.5
BcaC06g32870 Brassica carinata HOM05D001083 ORTHO05D006562 8.6e-46 187.2 104 85.6
BcaNung04959 Brassica carinata HOM05D001083 ORTHO05D006562 8.6e-46 187.2 104 85.6
A01p15970 Brassica napus HOM05D001083 ORTHO05D006562 8.6e-46 187.2 104 85.6
A03p55440 Brassica napus HOM05D001083 ORTHO05D006562 8.6e-46 187.2 104 85.6
C07p53730 Brassica napus HOM05D001083 ORTHO05D006562 8.6e-46 187.2 104 85.6
BolC7t45864H Brassica oleracea HOM05D001083 ORTHO05D006562 8.6e-46 187.2 104 85.6
BraA01t01531Z Brassica rapa HOM05D001083 ORTHO05D006562 8.6e-46 187.2 104 85.6
BraA03t14618Z Brassica rapa HOM05D001083 ORTHO05D006562 8.6e-46 187.2 104 85.6
PSO017G5756 Papaver somniferum HOM05D001083 ORTHO05D006562 8.6e-46 187.2 102 86.3
TAR381G1629 Trochodendron aralioides HOM05D001083 ORTHO05D006562 8.6e-46 187.2 102 86.3
C01p19950 Brassica napus HOM05D001083 ORTHO05D006562 1.1e-45 186.8 103 85.4
BolC1t01923H Brassica oleracea HOM05D001083 ORTHO05D006562 1.1e-45 186.8 103 85.4
AL7G28580 Arabidopsis lyrata HOM05D001083 ORTHO05D006562 1.5e-45 186.4 104 85.6
AT4G24620 Arabidopsis thaliana HOM05D001083 ORTHO05D006562 1.5e-45 186.4 104 85.6
Carub.0007s1644 Capsella rubella HOM05D001083 ORTHO05D006562 1.5e-45 186.4 104 85.6
Sp7g22610 Schrenkiella parvula HOM05D001083 ORTHO05D006562 1.5e-45 186.4 104 84.6
PGSC0003DMG400012910 Solanum tuberosum HOM05D001083 ORTHO05D006562 1.5e-45 186.4 104 85.6
EL10Ac1g01079 Beta vulgaris HOM05D001083 ORTHO05D006562 1.9e-45 186.0 104 86.5
AUR62019023 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.9e-45 186.0 104 86.5
Solyc04g076090.3 Solanum lycopersicum HOM05D001083 ORTHO05D006562 1.9e-45 186.0 104 85.6
Sopen04g030080 Solanum pennellii HOM05D001083 ORTHO05D022300 1.9e-45 186.0 104 85.6
BcaC09g50847 Brassica carinata HOM05D001083 ORTHO05D006562 2.5e-45 185.7 104 84.6
Migut.N02863 Erythranthe guttata HOM05D001083 ORTHO05D006562 2.5e-45 185.7 102 88.2
Thhalv10024695m.g Eutrema salsugineum HOM05D001083 ORTHO05D006562 2.5e-45 185.7 104 84.6
TAR381G0639 Trochodendron aralioides HOM05D001083 ORTHO05D006562 2.5e-45 185.7 102 85.3
TAR625G0337 Trochodendron aralioides HOM05D001083 ORTHO05D006562 2.5e-45 185.7 104 84.6
Aa31LG4G9700 Aethionema arabicum HOM05D001083 ORTHO05D006562 5.6e-45 184.5 104 85.6
Nn1g05517 Nelumbo nucifera HOM05D001083 ORTHO05D006562 5.6e-45 184.5 104 85.6
Actinidia29614 Actinidia chinensis HOM05D001083 ORTHO05D006562 7.3e-45 184.1 99 92.9
Lsat_1_v5_gn_9_74041 Lactuca sativa HOM05D001083 ORTHO05D006562 7.3e-45 184.1 99 88.9
Sabra02G0081500 Salix brachista HOM05D001083 ORTHO05D006562 1.2e-44 183.3 132 74.2
Aqoxy5G01325 Aquilegia oxysepala HOM05D001083 ORTHO05D006562 1.6e-44 183.0 102 87.3
Gohir.A06G032624 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.6e-44 183.0 104 85.6
Gohir.D06G032300 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.6e-44 183.0 104 85.6
Gorai.010G035600 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.6e-44 183.0 104 85.6
Manes.02G146400 Manihot esculenta HOM05D001083 ORTHO05D006562 1.6e-44 183.0 104 87.5
MSTRG.22176 Avicennia marina HOM05D001083 ORTHO05D006562 2.1e-44 182.6 104 85.6
CSS0034477 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 2.8e-44 182.2 101 89.1
CSS0045493 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 2.8e-44 182.2 101 89.1
CARHR232010 Cardamine hirsuta HOM05D001083 ORTHO05D006562 3.6e-44 181.8 104 82.7
Os09g0465600 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 3.6e-44 181.8 100 87.0
Ah.05g170690 Amaranthus hybridus HOM05D001083 ORTHO05D006562 1.1e-43 180.3 100 83.0
THA.LOC104806836 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 2.4e-43 179.1 101 85.1
Os08g0478800 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 4.0e-43 178.3 100 83.0
ClCG08G011800 Citrullus lanatus HOM05D001083 ORTHO05D006562 8.9e-43 177.2 104 85.6
CANSAT80G2842 Cannabis sativa HOM05D001083 ORTHO05D006562 1.2e-42 176.8 100 83.0
SEGI_39500 Sequoiadendron giganteum HOM05D001083 ORTHO05D006562 3.4e-42 175.3 102 80.4
HPP92_024662 Vanilla planifolia HOM05D001083 ORTHO05D022300 5.8e-42 174.5 99 87.9
HPP92_024674 Vanilla planifolia HOM05D001083 ORTHO05D006562 9.9e-42 173.7 98 88.8
vmacro21321 Vaccinium macrocarpon HOM05D001083 ORTHO05D006562 1.7e-41 172.9 101 84.2
SalBow2G2226 Salvia bowleyana HOM05D001083 ORTHO05D006562 4.9e-41 171.4 137 68.6
Zm00001eb315420 Zea mays HOM05D001083 ORTHO05D006562 6.4e-41 171.0 118 72.9
CDE10G1263 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 1.9e-40 169.5 102 78.4
SMO115G0176 Selaginella moellendorffii HOM05D001083 ORTHO05D006562 3.9e-38 161.8 102 76.5
Pp3c27_3970 Physcomitrium patens HOM05D001083 ORTHO05D006562 5.1e-38 161.4 102 74.5
Mapoly0057s0092 Marchantia polymorpha HOM05D001083 ORTHO05D006562 1.4e-35 153.3 95 74.7
ECA232G1336 Erigeron canadensis HOM05D001083 ORTHO05D006562 4.9e-33 144.8 80 87.5
RcHm_v2.0_Chr7g0237251 Rosa chinensis HOM05D001083 ORTHO05D006562 1.1e-29 133.7 102 65.7
Pp3c16_3900 Physcomitrium patens HOM05D001083 ORTHO05D006562 8.1e-28 127.5 109 61.5
RcHm_v2.0_Chr7g0237311 Rosa chinensis HOM05D001083 ORTHO05D006562 6.9e-27 124.4 102 62.7
SHI06379 Sapria himalayana HOM05D001083 ORTHO05D006562 1.1e-24 117.1 93 62.4
CSS0030378 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 2.4e-24 115.9 61 91.8
Psat2g066440 Pisum sativum HOM05D001083 ORTHO05D006562 9.3e-24 114.0 60 91.7
Sc01g0001070 Simmondsia chinensis HOM05D001083 ORTHO05D006562 1.3e-22 110.2 61 83.6
CDE10G0373 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 3.0e-22 109.0 70 77.1
unitig_578.g16183 Utricularia gibba HOM05D001083 ORTHO05D006562 2.2e-17 92.8 84 63.1
Glyma.14G180501 Glycine max HOM05D001083 ORTHO05D022300 1.6e-12 76.6 38 100.0
Dinv42631 Davidia involucrata HOM05D001083 ORTHO05D006562 5.3e-11 71.6 36 100.0
Lj4C734G7 Lonicera japonica HOM05D001083 ORTHO05D006562 1.5e-10 70.1 36 94.4
CDE10G0693 Ceratophyllum demersum HOM05D001083 ORTHO05D022300 7.6e-10 67.8 36 94.4


User provided reference genes

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