Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03630 Coffea canephora HOM05D007267 ORTHO05D009053 1.6e-39 165.6 83 100.0
Lalb_Chr17g0347461 Lupinus albus HOM05D007267 ORTHO05D009053 3.2e-32 141.4 81 86.4
FAN21G3895 Fragaria x ananassa HOM05D007267 ORTHO05D009053 9.4e-32 139.8 74 89.2
RcHm_v2.0_Chr5g0049391 Rosa chinensis HOM05D007267 ORTHO05D009053 9.4e-32 139.8 74 89.2
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 9.4e-32 139.8 75 88.0
Lj6g0001809 Lotus japonicus HOM05D007267 ORTHO05D009053 1.2e-31 139.4 77 85.7
TPR.G15594 Trifolium pratense HOM05D007267 ORTHO05D009053 1.2e-31 139.4 77 85.7
arahy.Tifrunner.gnm1.ann1.NLVX9W Arachis hypogaea HOM05D007267 ORTHO05D009053 2.1e-31 138.7 78 84.6
arahy.Tifrunner.gnm1.ann1.YII7CZ Arachis hypogaea HOM05D007267 ORTHO05D009053 2.1e-31 138.7 78 84.6
Medtr3g079820 Medicago truncatula HOM05D007267 ORTHO05D009053 2.1e-31 138.7 77 85.7
CiPaw.13G125300 Carya illinoinensis HOM05D007267 ORTHO05D009053 2.7e-31 138.3 74 87.8
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 2.7e-31 138.3 77 84.4
Hma1.2p1_0218F.1_g092330 Hydrangea macrophylla HOM05D007267 ORTHO05D009053 2.7e-31 138.3 74 93.2
Prupe.6G149700 Prunus persica HOM05D007267 ORTHO05D009053 2.7e-31 138.3 75 89.3
COL.COLO4_25353 Corchorus olitorius HOM05D007267 ORTHO05D009053 3.6e-31 137.9 71 91.5
Dinv32141 Davidia involucrata HOM05D007267 ORTHO05D009053 3.6e-31 137.9 76 85.5
FAN16G2508 Fragaria x ananassa HOM05D007267 ORTHO05D009053 3.6e-31 137.9 73 90.4
Cfa019700 Carpinus fangiana HOM05D007267 ORTHO05D009053 4.7e-31 137.5 78 80.8
Cfa019701 Carpinus fangiana HOM05D007267 ORTHO05D009053 4.7e-31 137.5 78 80.8
Haze_02482 Corylus avellana HOM05D007267 ORTHO05D009053 4.7e-31 137.5 78 82.1
MD03G1161500 Malus domestica HOM05D007267 ORTHO05D009053 4.7e-31 137.5 76 85.5
Psat5g107600 Pisum sativum HOM05D007267 ORTHO05D009053 4.7e-31 137.5 77 83.1
QL03p058144 Quercus lobata HOM05D007267 ORTHO05D009053 4.7e-31 137.5 76 84.2
Thecc.09G267200 Theobroma cacao HOM05D007267 ORTHO05D009053 6.1e-31 137.1 77 84.4
MSTRG.12404 Avicennia marina HOM05D007267 ORTHO05D009053 7.9e-31 136.7 78 83.3
Duzib170G0076 Durio zibethinus HOM05D007267 ORTHO05D009053 1.0e-30 136.3 76 85.5
FvH4_3g26950 Fragaria vesca HOM05D007267 ORTHO05D009053 1.0e-30 136.3 74 86.5
Potri.009G155300 Populus trichocarpa HOM05D007267 ORTHO05D009053 1.0e-30 136.3 75 85.3
Ciclev10029598m.g Citrus clementina HOM05D007267 ORTHO05D009053 1.4e-30 136.0 71 87.3
TWI31G1096 Tripterygium wilfordii HOM05D007267 ORTHO05D009053 1.8e-30 135.6 75 86.7
CANSAT54G0135 Cannabis sativa HOM05D007267 ORTHO05D009053 2.3e-30 135.2 77 81.8
FAN25G2009 Fragaria x ananassa HOM05D007267 ORTHO05D009053 2.3e-30 135.2 74 86.5
Gohir.D11G012400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 2.3e-30 135.2 75 85.3
Gorai.007G016000 Gossypium raimondii HOM05D007267 ORTHO05D009053 2.3e-30 135.2 75 85.3
vmacro14300 Vaccinium macrocarpon HOM05D007267 ORTHO05D009053 2.3e-30 135.2 75 84.0
Glyma.02G102300 Glycine max HOM05D007267 ORTHO05D009053 3.0e-30 134.8 77 81.8
Nitab4.5_0001504g0080 Nicotiana tabacum HOM05D007267 ORTHO05D009053 3.0e-30 134.8 77 87.0
Peaxi162Scf00345g00617 Petunia axillaris HOM05D007267 ORTHO05D009053 3.0e-30 134.8 75 84.0
Phvul.006G014400 Phaseolus vulgaris HOM05D007267 ORTHO05D009053 5.1e-30 134.0 77 81.8
Glyma.07G213600 Glycine max HOM05D007267 ORTHO05D009053 6.7e-30 133.7 77 81.8
ClCG02G024060 Citrullus lanatus HOM05D007267 ORTHO05D009053 8.8e-30 133.3 74 79.7
THA.LOC104799596 Tarenaya hassleriana HOM05D007267 ORTHO05D009053 2.0e-29 132.1 72 83.3
Ah.15g099120 Amaranthus hybridus HOM05D007267 ORTHO05D009053 3.3e-29 131.3 70 87.1
BcaC03g13815 Brassica carinata HOM05D007267 ORTHO05D009053 3.3e-29 131.3 71 85.9
BolC2t07084H Brassica oleracea HOM05D007267 ORTHO05D009053 3.3e-29 131.3 71 85.9
Thhalv10015046m.g Eutrema salsugineum HOM05D007267 ORTHO05D009053 3.3e-29 131.3 71 85.9
HanXRQChr09g0268081 Helianthus annuus HOM05D007267 ORTHO05D009053 3.3e-29 131.3 73 84.9
Actinidia22464 Actinidia chinensis HOM05D007267 ORTHO05D009053 4.4e-29 131.0 74 82.4
Atru.chr3.3040 Acer truncatum HOM05D007267 ORTHO05D009053 5.7e-29 130.6 75 80.0
Eucgr.J00600 Eucalyptus grandis HOM05D007267 ORTHO05D009053 5.7e-29 130.6 75 80.0
VMungo0540G2312 Vigna mungo HOM05D007267 ORTHO05D009053 5.7e-29 130.6 77 79.2
Aa31LG1G13830 Aethionema arabicum HOM05D007267 ORTHO05D009053 7.4e-29 130.2 70 84.3
AL6G32500 Arabidopsis lyrata HOM05D007267 ORTHO05D009053 7.4e-29 130.2 71 84.5
AT5G20935 Arabidopsis thaliana HOM05D007267 ORTHO05D009053 7.4e-29 130.2 71 84.5
BcaB05g22800 Brassica carinata HOM05D007267 ORTHO05D009053 7.4e-29 130.2 71 84.5
BcaNung05756 Brassica carinata HOM05D007267 ORTHO05D009053 7.4e-29 130.2 71 84.5
A03p10350 Brassica napus HOM05D007267 ORTHO05D009053 7.4e-29 130.2 71 84.5
C03p11890 Brassica napus HOM05D007267 ORTHO05D009053 7.4e-29 130.2 71 84.5
BolC3t13659H Brassica oleracea HOM05D007267 ORTHO05D009053 7.4e-29 130.2 71 84.5
Carub.0006s1925 Capsella rubella HOM05D007267 ORTHO05D009053 7.4e-29 130.2 71 84.5
MELO3C014688.2 Cucumis melo HOM05D007267 ORTHO05D009053 9.7e-29 129.8 74 78.4
Migut.N02428 Erythranthe guttata HOM05D007267 ORTHO05D009053 9.7e-29 129.8 75 81.3
Manes.11G104200 Manihot esculenta HOM05D007267 ORTHO05D009053 9.7e-29 129.8 76 81.6
GSVIVG01037512001 Vitis vinifera HOM05D007267 ORTHO05D009053 9.7e-29 129.8 76 81.6
C02p10530 Brassica napus HOM05D007267 ORTHO05D009053 1.3e-28 129.4 71 83.1
BraA02t05605Z Brassica rapa HOM05D007267 ORTHO05D009053 1.3e-28 129.4 71 83.1
BraA03t10347Z Brassica rapa HOM05D007267 ORTHO05D009053 1.3e-28 129.4 71 84.5
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 1.3e-28 129.4 73 82.2
CsaV3_4G023270 Cucumis sativus L. HOM05D007267 ORTHO05D009053 1.3e-28 129.4 73 79.5
PGR119G2323 Punica granatum HOM05D007267 ORTHO05D009053 1.3e-28 129.4 69 88.4
CARHR191910 Cardamine hirsuta HOM05D007267 ORTHO05D009053 1.7e-28 129.0 71 83.1
EL10Ac7g16252 Beta vulgaris HOM05D007267 ORTHO05D009053 2.8e-28 128.3 71 84.5
unitig_8.g2981 Utricularia gibba HOM05D007267 ORTHO05D009053 2.8e-28 128.3 75 80.0
Solyc01g009245.1 Solanum lycopersicum HOM05D007267 ORTHO05D009053 6.3e-28 127.1 70 85.7
Sopen01g004730 Solanum pennellii HOM05D007267 ORTHO05D009053 6.3e-28 127.1 70 85.7
PGSC0003DMG400013132 Solanum tuberosum HOM05D007267 ORTHO05D009053 6.3e-28 127.1 70 85.7
Nn2g14465 Nelumbo nucifera HOM05D007267 ORTHO05D009053 1.1e-27 126.3 75 77.3
TAR623G0997 Trochodendron aralioides HOM05D007267 ORTHO05D009053 1.1e-27 126.3 75 80.0
Aqoxy2G00618 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 1.4e-27 125.9 75 80.0
CAN.G226.32 Capsicum annuum HOM05D007267 ORTHO05D009053 1.4e-27 125.9 70 85.7
Cpa.g.sc103.55 Carica papaya HOM05D007267 ORTHO05D009053 1.4e-27 125.9 71 83.1
SalBow3G2700 Salvia bowleyana HOM05D007267 ORTHO05D009053 2.4e-27 125.2 79 78.5
Lsat_1_v5_gn_4_124761 Lactuca sativa HOM05D007267 ORTHO05D009053 5.3e-27 124.0 77 77.9
FAN11G1992 Fragaria x ananassa HOM05D007267 ORTHO05D009053 2.0e-26 122.1 74 81.1
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 2.6e-26 121.7 76 77.6
PSO339G2642 Papaver somniferum HOM05D007267 ORTHO05D009053 2.6e-26 121.7 75 74.7
PSO384G0574 Papaver somniferum HOM05D007267 ORTHO05D009053 2.6e-26 121.7 75 74.7
Gohir.A11G015400 Gossypium hirsutum HOM05D007267 ORTHO05D009053 1.0e-25 119.8 67 85.1
Rhsim01G0198000 Rhododendron simsii HOM05D007267 ORTHO05D009053 1.0e-25 119.8 94 66.0
arahy.Tifrunner.gnm1.ann1.SB69IV Arachis hypogaea HOM05D007267 ORTHO05D009053 1.3e-25 119.4 117 56.4
Sed0001981 Sechium edule HOM05D007267 ORTHO05D009053 2.2e-25 118.6 68 80.9
Duzib168G1484 Durio zibethinus HOM05D007267 ORTHO05D009053 2.9e-25 118.2 76 75.0
Zm00001eb015220 Zea mays HOM05D007267 ORTHO05D009053 7.2e-24 113.6 71 70.4
ATR0697G260 Amborella trichopoda HOM05D007267 ORTHO05D009053 4.7e-23 110.9 71 70.4
SEGI_22571 Sequoiadendron giganteum HOM05D007267 ORTHO05D009053 6.7e-22 107.1 74 66.2
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 8.8e-22 106.7 62 82.3
Aqoxy51s004 Aquilegia oxysepala HOM05D007267 ORTHO05D009053 1.1e-21 106.3 55 87.3
Sed0001742 Sechium edule HOM05D007267 ORTHO05D009053 1.5e-21 105.9 71 71.8
AagrBONN_evm.TU.Sc2ySwM_117.833 Anthoceros agrestis HOM05D007267 ORTHO05D009053 2.8e-20 101.7 66 65.2
Mapoly0146s0012 Marchantia polymorpha HOM05D007267 ORTHO05D009053 6.3e-20 100.5 72 62.5
Medtr3g079783 Medicago truncatula HOM05D000005 ORTHO05D000294 1.4e-19 99.4 78 67.9
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 9.1e-19 96.7 58 75.9
SMO367G0148 Selaginella moellendorffii HOM05D007267 ORTHO05D009053 3.5e-18 94.7 64 64.1
Pp3c3_19300 Physcomitrium patens HOM05D007267 ORTHO05D009053 1.3e-17 92.8 71 54.9
CBR_g51378 Chara braunii HOM05D007267 ORTHO05D009053 2.9e-17 91.7 79 51.9
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 1.3e-12 76.3 46 80.4
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 2.4e-11 72.0 47 74.5
Nitab4.5_0000157g0140 Nicotiana tabacum HOM05D007267 ORTHO05D009053 1.0e-09 66.6 33 90.9
MBI11_g25049_MAGBIO Magnolia biondii HOM05D007267 ORTHO05D009053 1.7e-09 65.9 35 77.1
arahy.Tifrunner.gnm1.ann1.RKVJ8T Arachis hypogaea HOM05D007267 ORTHO05D009053 3.2e-08 61.6 32 87.5
Os07g0164200 Oryza sativa ssp. japonica HOM05D007267 ORTHO05D009053 3.2e-08 61.6 40 77.5
Gorai.006G118000 Gossypium raimondii HOM05D007267 ORTHO05D009053 6.1e-07 57.4 43 65.1
Lsat_1_v5_gn_5_53160 Lactuca sativa HOM05D007267 ORTHO05D009053 1.4e-06 56.2 38 68.4
Gohir.D09G100550 Gossypium hirsutum HOM05D007267 ORTHO05D009053 3.0e-06 55.1 44 63.6
Lsat_1_v5_gn_6_53880 Lactuca sativa HOM05D007267 ORTHO05D009053 4.0e-06 54.7 47 61.7


User provided reference genes

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