Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 0.0e+00 1197.2 603 100.0
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 6.0e-112 409.1 609 42.2
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 2.0e-107 394.0 609 40.7
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.3e-100 369.4 600 39.2
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 7.2e-97 359.0 633 35.9
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 3.5e-96 356.7 600 38.7
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 3.9e-95 353.2 633 35.7
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 8.7e-95 352.1 603 39.1
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.3e-93 348.2 652 35.7
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.8e-92 344.4 603 38.5
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 2.4e-92 344.0 603 38.0
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.1e-89 335.1 611 37.5
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.2e-89 333.2 707 34.5
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.4e-84 317.4 599 39.1
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 4.1e-84 316.6 665 34.1
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 2.6e-83 313.9 609 36.0
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 7.7e-83 312.4 546 37.5
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 8.8e-79 298.9 656 33.4
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 1.3e-77 295.0 597 33.8
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 9.1e-76 288.9 635 34.3
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 4.5e-75 286.6 678 33.0
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 1.3e-74 285.0 604 35.9
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 2.9e-74 283.9 594 33.8
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 5.0e-74 283.1 615 35.0
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.1e-73 282.0 610 32.8
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 7.2e-73 279.3 549 35.0
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 1.4e-71 275.0 545 34.5
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.0e-71 273.9 664 32.4
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.0e-71 273.5 494 36.4
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 4.0e-71 273.5 622 33.9
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 4.4e-70 270.0 732 31.8
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 2.2e-69 267.7 606 33.7
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 2.4e-68 264.2 597 32.3
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 1.2e-67 261.9 747 30.9
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 9.4e-65 252.3 749 31.0
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 1.2e-64 251.9 747 30.9
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 6.1e-64 249.6 591 34.2
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 2.3e-63 247.7 748 30.5
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 3.0e-63 247.3 742 29.9
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 5.2e-63 246.5 745 28.5
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 2.6e-62 244.2 620 32.7
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 3.4e-62 243.8 647 30.8
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 5.7e-62 243.0 728 30.1
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 5.7e-62 243.0 606 31.5
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 1.7e-61 241.5 817 28.2
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 1.7e-61 241.5 756 30.4
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 1.1e-60 238.8 541 32.3
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.8e-60 238.0 769 29.1
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 1.1e-57 228.8 604 31.0
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 1.5e-57 228.4 602 31.4
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 1.5e-57 228.4 610 31.0
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 5.5e-57 226.5 607 32.0
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 3.6e-56 223.8 876 27.5
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 4.7e-56 223.4 660 29.8
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 6.1e-56 223.0 725 28.1
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.7e-54 216.5 652 28.4
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 2.2e-53 214.5 525 31.4
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 2.8e-53 214.2 654 28.1
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.7e-53 213.8 651 28.1
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 8.3e-53 212.6 605 30.1
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.1e-52 212.2 654 28.0
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 1.4e-52 211.8 825 26.8
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 3.1e-52 210.7 616 30.2
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 9.2e-52 209.1 365 37.3
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.5e-51 207.2 654 27.7
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 2.3e-50 204.5 296 40.9
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 3.3e-49 200.7 284 43.3
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 3.3e-49 200.7 284 43.7
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 3.3e-49 200.7 625 30.4
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 2.1e-48 198.0 711 28.0
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 6.1e-48 196.4 726 29.6
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 2.3e-47 194.5 890 26.0
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 8.9e-47 192.6 239 41.8
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 7.0e-44 183.0 238 41.6
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 7.0e-44 183.0 593 28.8
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 5.9e-43 179.9 630 30.3
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 5.9e-43 179.9 626 28.8
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 3.9e-42 177.2 489 30.7
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 4.3e-41 173.7 716 26.8
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 5.6e-41 173.3 682 25.8
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 9.5e-41 172.6 741 27.4
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 2.1e-40 171.4 721 27.7
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 4.7e-40 170.2 684 27.0
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 4.7e-40 170.2 749 26.8
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 4.0e-39 167.2 684 26.9
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 6.8e-39 166.4 328 35.7
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 2.6e-38 164.5 504 30.8
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 2.6e-38 164.5 726 27.7
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 2.6e-38 164.5 727 25.9
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 7.5e-38 162.9 316 37.7
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 7.5e-38 162.9 310 39.7
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.3e-37 162.2 758 26.5
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 4.9e-37 160.2 244 40.2
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.4e-36 158.7 748 26.7
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 4.1e-36 157.1 430 31.4
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 7.0e-36 156.4 604 28.1
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 7.0e-36 156.4 407 31.4
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.6e-35 155.2 356 33.1
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.7e-35 154.5 215 41.9
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 3.5e-35 154.1 757 27.2
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 6.0e-35 153.3 247 40.5
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.3e-34 152.1 249 39.8
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 1.5e-33 148.7 723 25.7
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.9e-33 148.3 410 30.2
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 2.5e-33 147.9 416 31.5
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 4.3e-33 147.1 581 28.7
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 7.3e-33 146.4 708 25.6
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 1.3e-29 135.6 758 25.1
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 5.4e-28 130.2 638 26.2
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 2.7e-27 127.9 363 27.0
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 2.3e-26 124.8 110 55.5
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 6.6e-26 123.2 147 42.9
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 4.3e-25 120.6 522 28.9
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 4.3e-25 120.6 236 35.6
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.0e-23 114.0 334 30.2
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 6.4e-21 106.7 405 29.6
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.4e-20 105.5 271 30.6
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.3e-18 99.0 317 26.8
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.7e-18 98.6 438 26.3
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.7e-18 98.6 438 26.3
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.3e-17 94.0 365 29.3
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.1e-16 91.7 364 28.6
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 8.1e-16 89.7 107 44.9
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 4.0e-15 87.4 320 26.9
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 3.4e-14 84.3 168 36.3
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 7.1e-12 76.6 110 40.9
Nitab4.5_0004549g0040 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.7e-11 74.7 93 46.2
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.3e-10 72.4 129 34.9
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 1.8e-07 62.0 142 29.6
Os08g0447500 Oryza sativa ssp. japonica HOM05D033117 ORTHO05D037222 1.2e-06 59.3 214 29.4
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 1.5e-06 58.9 92 40.2


User provided reference genes

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